Water yam (Dioscorea alata L.) diversity pattern in Brazil: an analysis with SSR and morphological markers

Substantial progress was made in the last decade in understanding the diversity in Dioscorea species. However, most of the studies so far concentrated in the ‘yam belt in Africa’. We present a genetic diversity and structure analysis among commercial and local varieties of water yam (Dioscorea alata L.) in Brazil using microsatellite and morphological markers. Twelve microsatellite primers were used to generate DNA profiles of 72 local varieties and 17 commercial accessions of water yam collected in four different regions in Brazil. Also, four morphological traits were evaluated on individual plants under field conditions. The morphological characterization showed considerable diversity. High polymorphism was found with 100 % polymorphism observed for 11 primers and a discriminating power value of 0.92, on average. We did not observe a strong population structure among sampling regions, while most of the genetic diversity was concentrated within regions (95.9 %). Analysis of the relationship between accessions did not clearly separate the local and commercial genotypes. However, the molecular analyses of D. alata showed high intraspecific diversity in local accessions from different regions in Brazil, with the highest Shannon index value (H′ = 0.41) for the Southeast region. These results confirmed an admixture of accessions in all sampling regions, consistent with the lack of a significant correlation between geographic and genetic distances, suggesting that farmers exchanged water yam materials extensively. The genetic diversity can be explained by the result of a continuous exchange of accessions by farmers throughout Brazil.     

Assessment of sediment connectivity from vegetation cover and topography using remotely sensed data in a dryland catchment in the Spanish Pyrenees

Purpose

Many Mediterranean drylands are characterized by strong erosion in headwater catchments, where connectivity processes play an important role in the redistribution of water and sediments. Sediment connectivity describes the ease with which sediment can move through a catchment. The spatial and temporal characterization of connectivity patterns in a catchment enables the estimation of sediment contribution and transfer paths. Apart from topography, vegetation cover is one of the main factors driving sediment connectivity. This is particularly true for the patchy vegetation cover typical of many dryland environments. Several connectivity measures have been developed in the last few years. At the same time, advances in remote sensing have enabled an improved catchment-wide estimation of ground cover at the subpixel level using hyperspectral imagery.

Materials and methods

The objective of this study was to assess the sediment connectivity for two adjacent subcatchments (~70 km²) of the Isábena River in the Spanish Pyrenees in contrasting seasons using a quantitative connectivity index based on fractional vegetation cover and topography data. The fractional cover of green vegetation, non-photosynthetic vegetation, bare soil and rock were derived by applying a multiple endmember spectral mixture analysis approach to the hyperspectral image data. Sediment connectivity was mapped using the index of connectivity, in which the effect of land cover on runoff and sediment fluxes is expressed by a spatially distributed weighting factor. In this study, the cover and management factor (C factor) of the Revised Universal Soil Loss Equation (RUSLE) was used as a weighting factor. Bi-temporal C factor maps were derived by linking the spatially explicit fractional ground cover and vegetation height obtained from the airborne data to the variables of the RUSLE subfactors.

Results and discussion

The resulting connectivity maps show that areas behave very differently with regard to connectivity, depending on the land cover and on the spatial distribution of vegetation abundances and topographic barriers. Most parts of the catchment show higher connectivity values in August as compared to April. The two subcatchments show a slightly different connectivity behaviour that reflects the different land cover proportions and their spatial configuration.

Conclusions

The connectivity estimation can support a better understanding of processes controlling the redistribution of water and sediments from the hillslopes to the channel network at a scale appropriate for land management. It allows hot spot areas of erosion to be identified and the effects of erosion control measures, as well as different land management scenarios, to be studied.     

Using the soil gas radon as an indicator for ground contamination by non-aqueous phase-liquids

1 The Problem  One of the major problems facing risk assessment at polluted industrial sites and military bases is subsurface contamination by non-aqueous phase-liquids (NAPLs), since tracing the extent of a NAPL plume using conventional methods (drive point profiling) is usually associated with difficulties. In an effort to trace subsurface contamination as precisely as possible, monitoring points are placed in the area that might be affected by contaminants, and groundwater and soil samples are taken to the laboratory for analysis. However, the final number of monitoring points is hardly ever sufficient for distinctive contamination mapping, and this may ultimately result in an unsuitable remediation action being taken. 2 Objectives  To obtain a more detailed image of a subsurface NAPL plume and, hence, to facilitate remediation measures that are best suited for the site in question, a denser network of monitoring points is desirable. The aim of the investigation described in this paper was therefore to develop a new detection method for subsurface NAPL contamination, which is based on an easily accessibleindicator for NAPLs rather than on the analysis of soil and groundwater samples taken at the site. Based on the good solubility of radon in NAPLs, the idea was put forward that subsurface NAPL contamination should have an influence on the natural radon concentration of the soil gas. Provided this effect is significant, it would be possible to carry out a straightforward radon survey on an appropriate sampling grid covering the suspected site and thus enabling the NAPL contamination to be detected by the localization of anomalous low radon concentrations in the soil. The overall aim of the investigation was to assess the general suitability of the soil-gas radon concentration as an indirect tracer for NAPL contamination in the ground. 3 Methods  The partitioning coefficient K_NAPL/air is one of the most influential parameters governing the decrease of the radon concentration in the soil gas in the presence of a subsurface NAPL contamination. Since NAPL mixtures such as gasoline, diesel fuel and paraffin are among the most important NAPLs regarding remediation activities, laboratory experiments were performed to determine the radon-partitioning coefficient for these three NAPL mixtures. Field experiments were carried out as well. The aim of the field experiments was to test the use of the soil-gas radon concentration as a tracer for NAPL contamination on-site. For the field experiments, each site was covered with a suitable grid of soil gas sampling points. Finally, the lateral radon distribution pattern achieved on each of the sites was compared to the respective findings of the earlier research performed by conventional means. 4 Results and Discussion  The results of the laboratory experiments clearly show a very strong affinity of radon to the NAPL mixtures examined. The partitioning coefficients achieved correspond to those published for pure NAPLs (Clever 1979) and are thus in the expected range. The results of the field experiments showed that the minimum radon concentrations detected match the respective NAPL plumes traced previously. 5 Conclusions  Both the results of the lab experiments and the on-site findings demonstrate that the soil-gas radon concentration can be used as an indicator for subsurface NAPL contamination. The investigation showed that NAPL-contaminated soil volumes give rise to anomalous low soil-gas radon concentrations in the close vicinity of the contamination. The reason for this decrease in the soil-gas radon concentration is the good solubility of radon in NAPLs, which enables the NAPLs to accumulate and ‘trap’ part of the radon available in the soil pores. 6 Recommendations and Outlook  Further research is required into contamination with rather volatile NAPLs such as BTEX. Further research is also needed to examine whether it is possible to not only localize a NAPL plume, but also to obtain some quantitative information about the subsurface NAPL contamination. The authors also believe that additional investigations should be carried out to study the ability of the method to not just localize a NAPL contamination, but also to monitor on-site, clean-up measures.     

Cytogenetic and genetic relationships between populations of Aegilops ventricosa Tausch

Summary Five samples of Aegilops ventricosa (2n=4x=28, genome formula DDNN) from different geographical origins, were crossed in a diallelic scheme. Metaphase I chromosome pairing of the hybrids, accounting for all the possible genetic combinations, was analysed. Only bivalents were formed in some hybrids, while multivalents were scored in other ones. Seed storage proteins, gliadins and albumins, were also analysed by means of polyacrylamide gel electrophoresis. Based on the presence of multivalents in hybrids, and on the differences in seed protein profiles, the samples could be grouped into two clusters. Meiosis was regular in hybrids obtained within samples of the same group, while multivalents were present in hybrids involving a sample of one group and one of the other. The evolutionary trends in Ae. ventricosa are discussed.     

A gamma‐ray spectrometry approach to field separation of illuviation‐type WRB reference soil groups in northern Thailand

According to the World Reference Base for Soil Resources (IUSS Working Group WRB, 2006), the differentiation of Acrisols and Alisols is based on the cation‐exchange capacity of clay, which cannot be directly determined in the field, but needs expensive and time‐consuming soil‐chemical analyses. This is an unsatisfactory situation for pedologists, who urgently require a rapid field method to distinguish illuviation‐type reference soil groups (Alisols, Acrisols, Luvisols, Lixisols). In this study, we tested the ability of gamma‐ray spectrometry to separate major WRB reference soil groups in the field. The underlying hypothesis is that Alisols and Acrisols are distinguished by their clay mineral composition, which should be reflected by geochemistry and consequently gamma‐ray radiation (i.e., K‐containing illite vs. K‐free kaolinite). Highly significant differences in their gamma‐ray spectrum for K, Th, and U were found for limestone and its soils. Especially the K and Th signatures allowed a clear separation of Acrisols and Alisols. In general, the surface radiation was sufficient to separate these soils. Best results were revealed considering parent rock and the whole soil profile. This means by using a portable radiometer and a pH meter, all illuviation‐type reference soil groups could be distinguished in this case. If applicable at other sites, this approach could enormously reduce expenditures for soil‐chemical analysis needed to assist soil classification.