Plant species richness and diversity in urban and peri-urban gardens of Niamey,Niger

Urban and peri-urban agriculture (UPA) significantly contributes to food and nutritional security of urban dwellers in many African countries. Economic and demographic pressures often lead to transformation of subsistence-oriented traditional homegardens into commercial production units. Such transformation is claimed to result in decreasing plant diversity, particularly of local species. A study was therefore undertaken in 51 gardens of Niamey, Niger, to assess the factors determining plant diversity and the suitability of UPA for in situ conservation of plant genetic resources. In each garden, the number and abundance of all human-used plant species were determined, and species density, Shannon index and Shannon evenness were calculated. In the 51 surveyed gardens, a total of 116 plant species were cultivated, most of them for the production of fruits or vegetables. Annual vegetables dominated, particularly exotic species grown for sale. In the cold season, an average of 14 species were cultivated per garden, the Shannon index was 0.96 and evenness was 0.39. Commercial gardens had a species richness similar to that of subsistence gardens, but a lower evenness (P < 0.005), caused by the dominance of a few vegetable species. Gardens of immigrants had a lower Shannon index than those of members of the local Djerma ethnic group. Stepwise multiple regression analysis showed significant influence of various variables on plant species richness and diversity parameters: garden size (richness and Shannon index), ethnicity of the gardener (richness and evenness), gender of the gardener and cash-oriented production (evenness), household size (richness) and garden possession status (Shannon index). Cluster analysis revealed the existence of five garden types. The highest species richness and diversity, particularly of perennial and local species, was found in large, peri-urban, commercial gardens managed by relatively wealthy, elderly gardeners with large families and a regular non-agricultural income.     

Effect of starvation on biochemical composition and gametogenesis in the Pacific oyster <Emphasis Type="Italic">Crassostrea gigas</Emphasis>

The effects of starvation on biochemical composition and gametogenesis were investigated in the Pacific oyster Crassostrea gigas. Histological analysis, combined with oocyte examination and measurements of protein, glycogen and lipid levels and RNA/DNA ratio from gonad, adductor muscle and mantle tissue of each sex were performed. In the starved groups, C. gigas showed gonad development, but the progress was delayed during the experiment. Glycogen was the first substrate used by C. gigas for dealing with lack of food. While glycogen was rapidly consumed, protein and lipid contents decreased gradually. A decrease in the RNA/DNA ratio in the starved groups in all the body components was found during starvation, illustrating that RNA/DNA ratio was a valid indicator of nutritional condition in C. gigas. A significant increase in water and ash contents and a corresponding decrease in condition index were observed in the starved groups, showing that the water and ash content and condition index were related to the usage of glycogen, lipid and protein reserves in body composition. During starvation, energy reserves were mobilized for survival and gonad development, but spawning was arrested. The information obtained in this study is useful for broodstock management in the Pacific oyster industry.     

A comparative study of mangrove ? oras in China and India

Species compositions in the mangrove habitats of China and India, especially on Hainan Island (China) and on the Sundarbans and the Andaman & Nicobar Islands (India), are of interest, showing several similarities and differences. The total mangrove areas of India cover about 6419 km 2 with 43 species (23 major and 20 minor species), while the mangrove areas of China cover about 150 km 2 with 26 speices (19 major and 7 minor speices). We carried out a comparison of mangrove floras in the Indian Sundarbans, Andaman & Nicobar Islands and in Hainan Island. The mangrove areas of the Indian Sundarbans comprise about 66.5% of the total Indian mangroves, presently covering an area of 4267 km 2 with 35 species from 22 genera and 16 families. There are 34 species from 17 genera and 13 families in the Andaman & Nicobar Islands. Hainan Island is considered a distribution center of mangroves; it has the largest number of mangrove species in China, i.e., 25 species from 15 genera and 12 families, accounting for about 96% of the total number of mangrove species in China. The mangroves of Hainan Island and the Andaman & Nicobar Islands belong to island types, while those of Sundarbans belong to inter-tidal deltaic types. Differences in soil type, rainfall, temperature, tidal fluctuation and other climatic features possibly cause variations in floristic composition of these regions.     

Relationship between <Superscript>137</Superscript>Cs concentration and potassium content in stem wood of Japanese cedar (<Emphasis Type="Italic">Cryptomeria japonica</Emphasis>)

To utilize forest resources in areas affected by fallout from the Fukushima Daiichi Nuclear Power Plant accident, it is important to understand the mechanisms of ¹³⁷Cs movement through the stem wood of contaminated trees. Understanding the mechanism of absorption and migration of ¹³⁷Cs to stem wood is necessary for clues to the future prediction of the transition of ¹³⁷Cs to xylem. In the present study, radial variations in ¹³⁷Cs concentration were investigated in Japanese cedar (Cryptomeria japonica D. Don) trees collected 1 year and 10 months after the accident. Additionally, the relationship between ¹³⁷Cs concentration and potassium (K) content was established. Trees with a higher moisture content and lower lightness value in heartwood tended to have a higher ¹³⁷Cs concentration in the heartwood. In these trees, ¹³⁷Cs concentration peaked at the heartwood–sapwood boundary and gradually decreased toward the pith. By contrast, K content within the heartwood remained nearly constant along the radial direction. The heartwood-to-sapwood ratio of ¹³⁷Cs concentration was significantly positively correlated with that of K content. Based on these results, we suggest that ¹³⁷Cs movement from sapwood to heartwood might be related to the K content ratio of heartwood and sapwood.     

A review of stand basal area growth models

Growth and yield modeling has a long history in forestry. The methods of measuring the growth of stand basal area have evolved from those developed in the U.S.A. and Germany during the last century. Stand basal area modeling has progressed rapidly since the first widely used model was published by the U.S. Forest Service. Over the years, a variety of models have been developed for predicting the growth and yield of uneven/even-aged stands using stand-level approaches. The modeling methodology has not only moved from an empirical approach to a more ecological process-based approach but also accommodated a variety of techniques such as: 1) simultaneous equation methods, 2) difference models, 3) artificial neural network techniques, 4) linear/nonlinear regres-sion models, and 5) matrix models. Empirical models using statistical methods were developed to reproduce accurately and precisely field observations. In contrast, process models have a shorter history, developed originally as research and education tools with the aim of increasing the understanding of cause and effect relationships. Empirical and process models can be married into hybrid mod-els in which the shortcomings of both component approaches can, to some extent, be overcome. Algebraic difference forms of stand basal area models which consist of stand age, stand density and site quality can fully describe stand growth dynamics. This paper reviews the current literature regarding stand basal area models, discusses the basic types of models and their merits and outlines recent progress in modeling growth and dynamics of stand basal area. Future trends involving algebraic difference forms, good fitting variables and model types into stand basal area modeling strategies are discussed.     

AlgU contributes to the virulence of <Emphasis Type="Italic">Pseudomonas syringae</Emphasis> pv. <Emphasis Type="Italic">tomato</Emphasis> DC3000 by regulating production of the phytotoxin coronatine

Pseudomonas syringae pv. tomato DC3000 (Pst DC3000), which causes bacterial speck disease of tomato, has been used as a model pathogen to investigate the molecular basis of plant–pathogen interactions. The function of many potential virulence factors encoded in the Pst DC3000 genome and their modes of action are not fully understood. P. syringae is known to produce the exopolysaccharide alginate. Although AlgU, a sigma factor, is known to regulate the expression of genes such as algD related to alginate biosynthesis, the molecular mechanisms of AlgU in the virulence of Pst DC3000 is still unclear. To investigate the function of AlgU and alginate in plant–bacterial pathogen interactions, we generated ΔalgU and ΔalgD mutants. After inoculation with ΔalgU but not ΔalgD, host plants of Pst DC3000 including tomato and Arabidopsis had milder disease symptoms and reduced bacterial populations. Expression profiles of Pst DC3000 genes revealed that AlgU can regulate not only the expression of genes encoding alginate biosynthesis, but also the expression of genes related to type III effectors and the phytotoxin coronatine (COR). We also demonstrated that the ΔalgU mutant showed full virulence in the Arabidopsis fls2 efr1 double mutant, which is compromised in the recognition of PAMPs. Further, the application of COR was able to restore the phenotype of the ΔalgU mutant in the stomatal response. These results suggest that AlgU has an important role in the virulence of Pst DC3000 by regulating COR production.     

Guava (<Emphasis Type="Italic">Psidium guajava L</Emphasis>. cv. Red Suprema) Crude Extract Protect Human Dermal Fibroblasts against Cytotoxic Damage Mediated by Oxidative Stress

We analyzed guava fruits (Psidium guajava L. cv. Red Suprema) from Cuba to determine their chemical composition, total antioxidant capacity, as well as their protective effect against oxidative damage using an in vitro model of human dermal fibroblasts. The guava fruit is a natural source of bioactive compounds, such as polyphenols, vitamin C, folates and beta carotenes with proven health benefits. Human dermal fibroblasts were pre-incubated with different concentrations of guava crude extract and then subjected to oxidative stress using the AAPH stressor. The number of apoptotic and dead cells, as well as the markers of oxidative damage such as lipid and protein oxidation significantly decreased when cells were pre-incubated with guava crude extract and then exposed to the stressor. The activity of antioxidant enzymes also improved when cells were pre-incubated with guava crude extract in comparison to cells subjected to stress without prior pre-incubation with the guava extract. The results obtained in this study highlight the health benefits of guava regarding oxidative stress, proving it to be an important source of bioactive compounds associated with important biological properties.     

Frequency of BCoV detection by a semi-nested PCR assay in faeces of calves from Brazilian cattle herds

Bovine coronavirus (BCoV) is one of the main causes of neonatal calf diarrhoea. Several diagnostic assays have been employed to detect the presence of the virus in stool samples from calves. Despite this, the frequency of BCoV infection among Brazilian and even South American cattle herds has yet to be well characterised. This study describes the occurrence of BCoV infection among calves from dairy and beef herds in four Brazilian states. A total of 282 stool samples from 1 to 60-day-old calves were evaluated for the presence of BCoV by a semi-nested (SN) PCR assay. The animals were from herds (n = 23) located in three geographical regions in Brazil (south, southeast, and center-west). The specific BCoV amplicon was detected in 15.6% (44/282) of the faecal specimens examined, of which 95.4% (42/44) were from diarrhoeic and 4.6% (2/44) from asymptomatic calves. The specificity of the SN-PCR amplicons was evaluated by restriction fragment length polymorphism (RFLP) analysis. The results show that the BCoV is widespread, mainly among calves from 16 to 30-days-old (p = 0.0023), and verify the association between BCoV infection and clinical signs of diarrhoea (p = 0.005). These findings emphasise the importance of this virus in enteric infections of Brazilian cattle herds.     

Nitrate removal efficiency and bacterial community of polycaprolactone-packed bioreactors treating water from a recirculating aquaculture system

A denitrification reactor packed with polycaprolactone (PCL) as a carbon source and biofilm carrier was developed to remove nitrate nitrogen (\( {\mathrm{NO}}_3^{-}-\mathrm{N} \)) from the water of a recirculating aquaculture system for 115 days. The hydraulic retention time was set to 6 h, and the water flow rate was 0.95 L h^?1. The removal rates of \( {\mathrm{NO}}_3^{-}-\mathrm{N} \) ranged from 34.67 to 155.7 g \( {\mathrm{NO}}_3^{-}-\mathrm{N} \) m^?3 day^?1 when the effluent \( {\mathrm{NO}}_3^{-}-\mathrm{N} \) concentrations ranged between 1.62 and 72.25 mg L^?1. No obvious changes in the Fourier transform infrared spectra of the PCL before and after use were observed. Bacterial community structure in the biofilm of the PCL granules was analyzed using Illumina MiSeq sequencing technology. Proteobacteria and Bacteroidetes were predominant in the biofilm, with relative abundances of 63.9 and 27.4%, respectively. Three genera, Acidovorax, Azospira, and Diaphorobacter, were capable of both denitrification and PCL degradation. This study indicates that PCL-packed reactors may be used and optimized for removing nitrate from aquaculture effluents.