Bibliometric Profile of an Agbioscience Research Enhancement Grant Program

This study is a bibliometric analysis of journal articles generated from an intramural grant program in the agbiosciences. Using citation analysis and bibliometric mapping, the study analyzes 515 journal articles published from 1999 to 2017. Results show the growth of journal article output, identify the major research fields and topics, describe national and international authorial and institutional collaborations, and quantify the performance and impact of the article output. The grant program’s journal article output presents a multi-disciplinary range of scholarly publications that reflect the disciplines of The Ohio State University’s College of Food, Agricultural, and Environmental Sciences, which houses the grant program.     

Effects of urbanization on California’s fish diversity: Differentiation, homogenization and the influence of spatial scale

Human development of freshwater ecosystems has lead to drastic changes in freshwater fish faunas, including the loss of many native species and the gain of non-natives. Typically conservation ecologists view these two opposing forces as contributing to biological homogenization, and consider homogenization as one of the principle negative consequences of urbanization. However, homogenization is only one outcome out of many that can result from the loss and gain of species. In particular, it is possible for invasions and extinctions to lead to differentiation; a process whereby two (or more) regions become less similar to one another through time. Using the freshwater fishes of California, we show that urbanization is highly positively correlated to both the endangerment of native fish and the invasion of non-native fish within watersheds. Despite this, the fish faunas of California’s watersheds have differentiated from one another through time. Furthermore, the degree of differentiation is positively correlated with measures of urbanization, which is contrary to expectation. We suggest that this result reflects: (1) the haphazard manner in which non-native fishes have been introduced into California watersheds, (2) the difficulty that both native and non-native fishes have in expanding their geographical ranges, and (3) the continued presence of vestiges of formerly distinct regional faunas. This pattern of differentiation among watersheds is likely a matter of scale, as previous work on freshwater fishes has demonstrated homogenization at both larger and smaller spatial scales. In addition the observed pattern is probably a short-term (temporal) phenomena and will disappear with continued invasion and extinction. We suggest that similar patterns may occur for other taxa that have limited natural dispersal abilities and that are idiosyncratically released as non-natives via human activities (e.g. herptiles).     

Effects of habitat characteristics and sedimentation on performance of marine reserves in St. Lucia

This study examines factors affecting the rate and extent of biomass build-up among commercially important groupers, snappers, grunts, parrotfish and surgeonfish in a network of four marine reserves in southwest St. Lucia, Caribbean. Reserves constituted 35% of the total reef area originally available for fishing. Protection was instigated in 1995 after a baseline survey with annual or biennial censuses performed until 2002. Each survey consisted of 114 fifteen minute fish counts in reserves and 83 in fishing grounds, at depths of 5 m and 15 m in a 10 m diameter counting area. Estimates of number and size (cm) of target species were used to calculate fish family biomass. Data were analysed using three-way ANOVA in a before-after-control-impact pairs (BACIP) design. All families increased significantly in biomass over time at nearly all sites. Increases were greater in reserves than fishing grounds, except for grunts, and responses were strongest in parrotfish and surgeonfish. The combined biomass of families more than quadrupled in reserves and tripled in fishing grounds between 1995 and 2002. During this period coral cover declined by 46% in reserves and 35% in fishing grounds. Multiple regression showed that neither habitat characteristics nor habitat deterioration significantly affected rates of biomass build-up. The key factor was protection from fishing, which explained 44% of the variance in biomass growth. A further 28% of the variance was explained by sedimentation, a process known to stress reef invertebrates, significantly reducing the rate of biomass build-up. St. Lucia’s reserves succeeded in producing significant gains to fish stocks despite coral cover and structural complexity falling steeply over the period of the study.     

Development of a Two-Phase Cosolvent Washing-Fungal Biosorption Process for the Remediation of DDT-Contaminated Soil

A bench scale, two-phase soil washing-biosorption process was developed for the remediation of p,p′-DDT-contaminated soil (containing 990 and 7750 mg kg^-1 of p,p′-DDT). Removal of p,p′-DDT from contaminated soil was achieved by washing the soil with low molecular weight primary alcohols (ethanol or 1-propanol). An improved efficiency of p,p′-DDT removal was observed with increasing C-chain length of the cosolvent and by increasing the cosolvent volume fraction. When 40 or 80% 1-propanol were used, greater than 93% of p,p′-DDT was desorbed from the respective soils. p,p′-DDT was partitioned from the cosolvent solutions using biomass of Cladosporium sp. strain AJR³18,501 as the sorptivematrix. When studies were conducted using a cosolvent-recycling regime (with 80% 1-propanol) greater than 95% of p,p′-DDT was removed from Soil A (990 mg kg^-1 p,p′-DDT) and Soil B (7750 mg kg^-1 p,p′-DDT) with the majority of the desorbed organochlorine repartitioning onto the fungal biomass. Less than 2.4 μg mL^-1 p,p′-DDT was detected in the cosolvent wash solution of Soil A after 80 hr: potentially the cosolvent could be further reused to treat other soil. A higher concentration of p,p′-DDT was detected in the cosolvent wash solution of soil B after 120 hr (13.3 μg mL^-1) indicating that the p,p′-DDT sorption sites on the fungal biomass were fully saturated.     

Does the matrix matter? A forest primate in a complex agricultural landscape

Many threatened primates now exist in fragmented forest habitats. The survival of these populations may depend on their ability to utilise agricultural or other matrix habitats between forest fragments, but this is poorly known. Here, we systematically investigate an arboreal primate’s use of a heterogeneous matrix in a fragmented forest landscape: the Angola black-and-white colobus (Colobus angolensis palliatus) in southern Kenya. We used a novel technique, based on semi-structured interviews with local informants, to address the difficulty of sampling relatively rare but important events, such as dispersal between fragments. We found that colobus frequently travelled and foraged in indigenous matrix vegetation (such as mangrove, wooded shrubland and shrubland) up to 4 km from the nearest forest fragments. Agricultural habitats, such as perennial plantation (coconut, mango and cashew nut) were also used by colobus for travelling and foraging (in remnant indigenous trees). The probability of sighting colobus in the matrix increased with the proportion of both tall (>6 m) vegetation cover and food tree cover, but declined with distance from forest habitat. Our findings suggest that certain matrix habitats are important for C. a. palliatus, and that future primate conservation initiatives might benefit from adopting a ‘landscape-level’ approach to habitat management, particularly in fragmented forest systems.     

In situ Remediation of DDT-contaminated Soil Using a Two-Phase Cosolvent Flushing-Fungal Biosorption Process

The effectiveness of cosolvent soil flushing and fungal biosorption for the remediation of p,p′-DDT-contaminated soil was evaluated usingpacked soil columns in order to simulate an in situ soil flushing technique. Greater than 95% of p,p′-DDT (940 mg kg^-1) was desorbed from the soil by flushing with 40 or 80% 1-propanol. Increasing the cosolvent volume fraction increased the rate of p,p′-DDT removal from the soil, however, the extent of p,p′-DDT removal was not enhanced. A further enhancement in therate of p,p′-DDT removal was achieved by increasing the cosolventflow rate from 6 ml hr^-1 to 12 ml hr^-1 (pore water velocity from 18.9 to 37.8 cm hr^-1). The desorbed p,p′-DDT was removed from cosolvent wash solutions by partitioning onto fungal biomass. Biosorption of p,p′-DDT resulted in low concentrations of the organochlorine (3.3 μg ml^-1) remaining in thecosolvent effluent indicating that the cosolvent could be reused for further p,p′-DDT desorption. Using this technique, between 53 and 95 pore volumes were required to reduce p,p′-DDT concentrationsfrom 990 mg kg^-1 to below Australian and New Zealand Environmentaland Conservation Council (ANZECC) guidelines (50 mg kg^-1).     

Development of an algorithm identifying maximally diverse core collections

The development of a core collection, one which represents the genetic diversity of a crop with minimal redundancy and increases utility of the collection as a whole, is especially important as the funding for germplasm collections decreases. With limited resources, it is difficult to manage large germplasm collections and disperse genetically diverse germplasm to plant breeders. An algorithm was developed to assist in selection of core collections based on estimates of genetic distance. The criteria for selection of the maximum genetically diverse set were based on rankings of genetic distance between an accession with respect to all other accessions. Depending on the size core which a user wished, a zone around each selected accession was determined and no other accession within these limits was selected. The premise for the algorithm was that the genetic variability represented in the core must be representative of the distribution of genetic distances within the population of interest. In the present study, the algorithm was used with RAPD-marker-based estimates of genetic distance for 270 Theobroma cacao L. accessions and 134 Capsicum accessions that chose a set representing 18.5% of the population and representing the breadth of RAPD-based variation.