Pulsed-field gel electrophoresis patterns and antimicrobial susceptibility phenotypes for coagulase-positive staphylococcal isolates from pustules and carriage sites in dogs with superficial bacterial folliculitis

OBJECTIVE: To determine whether coagulase-positive staphylococcal isolates that are genotypically the same strain obtained from pustules and carriage sites of individual dogs with superficial bacterial folliculitis have the same antimicrobial susceptibility phenotype. ANIMALS: 40 dogs with superficial bacterial folliculitis. PROCEDURES: Samples were obtained from 3 pustules and 3 carriage sites (ie, anus, nonlesional axillary skin, and nasal mucosa) for bacterial culture, morphologic identification, Gram staining, catalase and coagulase testing, antimicrobial susceptibility testing, speciation, and pulsed-field gel electrophoresis (PFGE). RESULTS: 223 isolates from pustules and carriage sites were included. Seventeen susceptibility phenotypes were found among isolates. One hundred twenty-eight (100%) isolates from pustules and 95 (100%) isolates from carriage sites were susceptible to cephalothin; 128 (100%) isolates from pustules and 94 (98.9%) isolates from carriage sites were susceptible to amoxicillin-clavulanic acid; 114 (89.1%) isolates from pustules and 82 (86.3%) isolates from carriage sites were susceptible to erythromycin and lincomycin hydrochloride; and 103 (80.5%) isolates from pustules and 70 (73.7%) isolates from carriage sites were susceptible to trimethoprim-sulfamethoxazole. In 37 of 39 (94.9%) dogs, isolates with the same PFGE pattern from multiple pustules had the same susceptibility phenotype. In 21 of 33 (63.6%) dogs, isolates from multiple carriage sites with the same PFGE pattern had the same susceptibility phenotype. CONCLUSIONS AND CLINICAL RELEVANCE: In dogs with superficial bacterial folliculitis, most coagulase-positive staphylococcal isolates from pustules that are genotypically the same strain will have the same susceptibility phenotype and treatment may be based on empiric antimicrobial selection or susceptibility testing of 1 lesional isolate.     

Kinematic-wave model for soil-moisture movement with plant-root extraction

A kinematic-wave model is developed for simulating the movement of soil moisture in unsaturated soils with plants. The model involves three free boundaries. Analytical solutions are derived when the plant roots are assumed to extract moisture at a constant rate and the upstream boundary condition is independent of time. Numerical solutions are the only resort when the moisture extraction and the upstream boundary condition both depend on time.     

Errors of kinematic-wave and diffusion-wave approximations for time-independent flows in infiltrating channels

Time-independent (or steady-state) cases of channel flow were treated and errors of the kinematic-wave and diffusion-wave approximations derived for finite flow at the upstream end. The diffusion-wave approximation was found to be in excellent agreement with the dynamic wave representation, with error magnitudes of 0.2% for values of KF ₀ ² 7.5, where K is the kinematic-wave number and f ₀ is the Froude number. Even for small values of KF ₀ ² (e.g., KF ₀ ² =0.75), the errors were typically in the range of 1.3 to 3.7%. The approximate analytical diffusion-wave solution performed poorly with error magnitudes greater than 30% even for large values of KF ₀ ² . The kinematic-wave approximation was also found to be in good agreement with the dynamic-wave representation with errors of about 1.2% for KF ₀ ² =7.5 and varying from 15 to 44% for KF ₀ ² =0.75.     

Hydroxycinnamoylmalic acids and their methyl esters from pear (Pyrus pyrifolia Nakai) fruit peel

Two novel caffeoylmalic acid methyl esters, 2-O-(trans-caffeoyl)malic acid 1-methyl ester (6) and 2-O-(trans-caffeoyl)malic acid 4-methyl ester (7), were isolated from pear (Pyrus pyrifolia Nakai cv. Chuhwangbae) fruit peels. In addition, 5 known hydroxycinnamoylmalic acids and their methyl esters were identified: 2-O-(trans-coumaroyl)malic acid (1), 2-O-(cis-coumaroyl)malic acid (2), 2-O-(cis-coumaroyl)malic acid 1-methyl ester (3), 2-O-(trans-coumaroyl)malic acid 1-methyl ester (4), and 2-O-(trans-caffeoyl)malic acid (phaselic acid, 5). The chemical structures of these compounds were determined by spectroscopic data from ESI MS and NMR. Of all the isolated compounds, five hydroxycinnamoylmalic acids and their methyl esters (2-4, 6, 7) were identified in the pear for the first time.     

The future of tropical species in secondary forests: A quantitative review

Deforestation and degradation of tropical old-growth forests has the potential to cause catastrophic species extinctions. In this review, we assess whether regenerating secondary forests (SF) can support species typically found in old-growth forest (OG) and so prevent extinctions. We review 65 studies that compare faunal diversity in SF and corresponding OG, and compare the similarity of species composition both within and between these two forest types using the Sorensen, Morisita-Horn and Sorensen-Chao indices. Comparisons between traditional similarity indices and Sorensen-Chao, which minimizes sampling biases, indicated that limited sampling effort consistently reduced apparent similarity between SF and OG and that similarity between SF and OG is actually higher than previously appreciated. Similarity, which ranges from 0 to 1, varied from 0.49 to 0.92 between replicate OG sites and was correlated with similarity between SF and OG. This correlation might be an artefact of variation among studies in sampling effort, especially for vertebrates where small samples reduce apparent similarity across all comparisons, as well as a real effect of variation among studies in landscape heterogeneity and the presence of species with patchy distributions. Therefore, similarity between SF and OG cannot be interpreted without an understanding of background variation in OG. Similarity between different SF sites provided no evidence that disturbance specialists dominate SF. Similarity to OG increased rapidly with SF age; when SF was contiguous with OG; when SF was growing in small clearings; and after low intensity land uses including clearing only, shifting agriculture and tree plantations. This describes the most frequently observed tropical SF; isolated from roads and on hilly terrain unsuitable for mechanized agriculture. Thus, our analyses indicate that tropical SF can play an important role in biodiversity conservation particularly when OG forests are nearby. An important caveat remains, however. Abundance, geographic range and levels of habitat specialization are often related. Widespread, abundant, habitat generalists might dominate similarity analyses even when relatively rare OG specialists are present. Additional species-level analyses of habitat specialization will be needed before the conservation value of tropical SF is fully understood.     

Response of soil properties and yam yield to Chromolaena odorata (Asteraceae) and Tithonia diversifolia (Asteraceae) mulches

Plant materials differ in their chemical composition, rate of decomposition and suitability as mulch materials. Experiments were conducted during 2006–2007 and 2007–2008 cropping seasons for early yam cultivation at Owo in the forest–savanna transition zone of southwest Nigeria to study the effect of Chromolaena odorata and Tithonia diversifolia mulches applied at 0.0, 5.0, 7.5, 10.0 and 12.5 t ha^?1 on soil chemical properties, leaf nutrient composition, growth and tuber yield of white yam (Dioscorea rotundata Poir). Both C. odorata and T. diversifolia mulches reduced soil bulk density and temperature; increased concentrations of soil organic matter (SOM), total N, available P, exchangeable K, Ca and Mg, leaf N, P, K, Ca and Mg; enhanced growth and yield of yam compared with control. The values of SOM, total N and available P and leaf N and P concentrations increased with increasing mulch rate. C. odorata mulch and T. diversifolia mulch applied at 10.0 and 7.5 t ha^?1, respectively, was found to be suitable for yam production. T. diversifolia mulch compared with C. odorata mulch produced higher values of soil chemical properties, leaf nutrient concentrations, growth and yield of yam. T. diversifolia mulch produced 19% and 18% higher tuber yield compared with C. odorata mulch during 2006–2007 and 2007–2008 cropping seasons, respectively.     

Nomenclature and genetic relationships of apples and pears from Terceira Island

Heritage apple (Malus domestica Borkh. hybrids) and pear (Pyrus communis L. hybrid) trees grow in villages throughout Terceira Island, Azores, Portugal. Some of these pears have different names but similar morphology. The objective of this study was to determine synonymy, homology, and phylogeny of apples and pears from Terceira and to examine potential relationships of the island pears with standard apples and pears of Portuguese or American descent. Nine apple microsatellite markers were used to determine genetic relationships. Distance- and parsimony-based cluster analysis grouped these genotypes into separate apple and pear clades. The Terceira apples were divided into two clades: the maçā and the reineta-reinette. Among the 17 heritage apple genotypes, seven unique accessions were identified and four groups of synonyms, or possibly clones, were detected including: ‘Reineta Agosto’ and ‘Reineta Verde’ from Altares; ‘Reineta Castanha’ and ‘Reineta Verde Miuda’; ‘Maçā Pêra,’ ‘Maçā Calhau’, ‘Pêro Branco’ from Salga and from Terra-Chā and ‘Maçā Marmelo’; and the five genotypes ‘Maçā Sao Joao’, ‘Malápio Rosa’, ‘Maçā Gaspar’, ‘Maçā Branca’ and ‘Maçā Pato’. In addition, two homonyms were detected. ‘Pêro Vermelho’ from Terra Chā was a separate genotype from a tree from Doze Ribeiras of the same name, but Pêro Branco from Terra Chā appears to be a clone that can be distinguished by an additional allele at CH1F07a from a tree with that name from Salga. One pair of apple clones, ‘Reineta Agosto’ and ‘Reineta Verde’ from Altares appear to be derived from an unreduced gamete of ‘Golden Delicious.’ Another apple genotype ‘Maçā Acida’ could be a sibling of the ‘Maçā Pêra’ clonal group. Other tested standard apples from the US genebank were unrelated to Terceira genotypes. Of the seven heritage pears, five unique genotypes and one pair of synonyms were detected. ‘Pêra Papo Pintassilgo’ from Raminho and ‘Pêra Vermelha’ from the nursery of Serviço de Desenvolvimento Agario da Terceira (SDAT) were synonyms. ‘Passans du Portugal’ was related to ‘Pêra Cabaca’ but other standard pears from the US genebank were unrelated to Terceira genotypes. Future studies will include additional apple and pear cultivars from other Islands of the Azores and continental Portugal, and wild Asian species to further explore genetic relationships.