EVALUATION AND APPLICATION OF A FUGACITY MODEL TO EXPLAIN THE PARTITIONING OF CONTAMINANTS IN THE ST. LAWRENCE RIVER VALLEY

A fugacity-based model to explain the partitioning of contaminants in the environment is evaluated. Using emission inventories, air and water concentrations predicted by the model for the southwestern Québec region generally agree with field data for phenanthrene,α-HCH, lindane, and DDT. For pyrene, air concentrations are in agreement but water concentrations were in error by a factor of nearly 20. There is also a possibility for using the model to predict emissions from known air and water concentrations. The model was run over 120 times each for phenanthrene, HCB, and lindane while randomly varying the input parameters each time. A Principal Components Analysis and a partial correlation analysis indicate that certain input parameters are more important for some compounds than for others and that log K _ow is the physical-chemical property of greatest importance.     

Leaf decomposition in two semi-evergreen tropical forests: influence of litter quality

Decomposition processes in tropical semi-evergreen forests are still poorly understood. The influence of soil properties and litter quality on decomposition rate was studied in two semi-evergreen forests of Guadeloupe, a forest plantation and a secondary forest, located on different soils. Leaf litter of four tree species was enclosed in litterbags for a 14-month period. Non-linear correlations were calculated between mass loss and the concentration of major leaf components (soluble C, N, lignin, cellulose, tannins, total soluble phenols) in order to determine the best predictor of leaf litter decomposition. Soil physico-chemical properties and ratios between some of the above-mentioned litter quality parameters were also examined as mass loss predictors. In addition, non-linear correlations were calculated between mass loss and litter quality parameters, at successive periods. Litter quality was the main determinant of litter decomposition in the studied forests. Several litter quality parameters were correlated with leaf disappearance, varying according to stages of decomposition. Between 1 month and 2.5 months, the mass loss was correlated negatively with the initial phenol content and with initial lignin:N and (lignin+phenol):N ratios. From 2.5 to 5.5 months, the mass loss was correlated negatively with the initial phenol content and positively with the initial cellulose content. At later stages of decomposition (9-14 months), the mass loss was correlated negatively with the initial tannin content. Differences in soil characteristics and fauna did not seem to be enough to affect decomposition.     

Administration of probiotics influences F4 (K88)-positive enterotoxigenic Escherichia coli attachment and intestinal cytokine expression in weaned pigs

ABSTRACT: This study evaluated the effect of the probiotics Pediococcus acidilactici and Saccharomyces cerevisiae boulardii on the intestinal colonization of O149 enterotoxigenic Escherichia coli harbouring the F4 (K88) fimbriae (ETEC F4) and on the expression of ileal cytokines in weaned pigs. At birth, different litters of pigs were randomly assigned to one of the following treatments: 1) control without antibiotics or probiotics (CTRL); 2) reference group in which chlortetracycline and tiamulin were added to weanling feed (ATB); 3) P. acidilactici; 4) S. cerevisiae boulardii; or 5) P. acidilactici + S. cerevisiae boulardii. Probiotics were administered daily (1 × 109 CFU per pig) during the lactation period and after weaning (day 21). At 28 days of age, all pigs were orally challenged with an ETEC F4 strain, and a necropsy was performed 24 h later. Intestinal segments were collected to evaluate bacterial colonization in the small intestine and ileal cytokine expressions. Attachment of ETEC F4 to the intestinal mucosa was significantly reduced in pigs treated with P. acidilactici or S. cerevisiae boulardii in comparison with the ATB group (P = 0.01 and P = 0.03, respectively). In addition, proinflammatory cytokines, such as IL-6, were upregulated in ETEC F4 challenged pigs treated with P. acidilactici alone or in combination with S. cerevisiae boulardii compared with the CTRL group. In conclusion, the administration of P. acidilactici or S. cerevisiae boulardii was effective in reducing ETEC F4 attachment to the ileal mucosa, whereas the presence of P. acidilactici was required to modulate the expression of intestinal inflammatory cytokines in pigs challenged with ETEC F4.     

Toxicity of dimethoate and fenoxycarb to honey bee brood (Apis mellifera), using a new in vitro standardized feeding method

A new in vitro method was devised to assess the effects of pesticides on honey bee brood. The method allowed the quantification of doses ingested by larvae and the assessment of larval and pupal mortality. Larval mortality in control samples was lower than 10%. Two active substances were tested: dimethoate and fenoxycarb. The LD(50) of dimethoate was 1.9 microg larva(-1) 48 h after oral exposure of larvae at day 4. Additional dose-related effects on pupal mortality were noted. After a chronic intoxication, the NOAEC (No Observed Adverse Effect Concentration) for larval mortality at day 7 was 2.5 mg kg(-1), whereas a NOAEC of 5 mg kg(-1) was found at day 22 for delayed effects on the reduction of adult emergence. Fenoxycarb applied at day 4 showed no effect on larvae, whereas emergence of adults was affected at doses higher than 6 ng larva(-1).     

Topography and crop management are key factors for the development of american leaf spot epidemics on coffee in costa rica

ABSTRACT We monitored the development of American leaf spot of coffee, a disease caused by the gemmiferous fungus Mycena citricolor, in 57 plots in Costa Rica for 1 or 2 years in order to gain a clearer understanding of conditions conducive to the disease and improve its control. During the investigation, characteristics of the coffee trees, crop management, and the environment were recorded. For the analyses, we used partial least-squares regression via the spline functions (PLSS), which is a nonlinear extension to partial least-squares regression (PLS). The fungus developed well in areas located between approximately 1,100 and 1,550 m above sea level. Slopes were conducive to its development, but eastern-facing slopes were less affected than the others, probably because they were more exposed to sunlight, especially in the rainy season. The distance between planting rows, the shade percentage, coffee tree height, the type of shade, and the pruning system explained disease intensity due to their effects on coffee tree shading and, possibly, on the humidity conditions in the plot. Forest trees and fruit trees intercropped with coffee provided particularly propitious conditions. Apparently, fertilization was unfavorable for the disease, probably due to dilution phenomena associated with faster coffee tree growth. Finally, series of wet spells interspersed with dry spells, which were frequent in the middle of the rainy season, were critical for the disease, probably because they affected the production and release of gemmae and their viability. These results could be used to draw up a map of epidemic risks taking topographical factors into account. To reduce those risks and improve chemical control, our results suggested that farmers should space planting rows further apart, maintain light shading in the plantation, and prune their coffee trees.     

Survey of Anaplasmataceae bacteria in sheep from Senegal

Purpose

The authors studied the role of bacteria belonging to Anaplasmataceae family as the causes of acute illnesses of sheep in West Africa.

Methods

We examined and sampled 120 febrile sheep in two regions of Senegal for this study. The DNA extracted from these blood samples was tested by PCR using two pairs of primers (groEL-based and 16S rRNA gene-based).

Results

In 52/120 samples, the microscopic examination revealed intraerythrocytic and/or intraphagocytic spherical inclusions. In 48/52 cases, we succeeded in identifying the bacterial agent: in 38 cases, it was Anaplasma ovis; in six cases, it was Ehrlichia ruminantium; in two cases, Anaplasma phagocytophilum; in one case, Anaplasma platys; and in one case, a yet uncultured Anaplasma sp. closely related to A. phagocytophilum.

Conclusions

Our studies demonstrated the great variety of pathogenic bacteria from the Anaplasmataceae family in the blood of clinically ill sheep. A. ovis was identified unexpectedly often. For the first time, A. phagocytophilum was found in sub-Saharan Africa, and its further epidemiology may be now reconsidered. The roles of canine pathogen, A. platys, and yet undescribed Anaplasma sp. “Badiouré” in ovine pathology should be more closely studied.     

Experimental infection of Pacific oyster Crassostrea gigas spat by ostreid herpesvirus 1: demonstration of oyster spat susceptibility

ABSTRACT: In 2008 and 2009, acute mortalities occurred in France among Pacific cupped oyster, Crassostrea gigas, spat. Different hypothesis including the implication of environmental factors, toxic algae and/or pathogens have been explored. Diagnostic tests indicated that OsHV-1 including a particular genotype, termed OsHV-1 μVar, was detected in most of samples and especially in moribund oysters with the highlighting of virus particles looking like herpes viruses by TEM examination. In this study, an experimental protocol to reproduce OsHV-1 infection in laboratory conditions was developed. This protocol was based on the intramuscular injection of filtered (0.22 μm) tissue homogenates prepared from naturally OsHV-1 infected spat collected on French coasts during mortality outbreaks in 2008. Results of the experimental trials showed that mortalities were induced after injection. Moreover, filtered tissue homogenates induced mortalities whereas the same tissue homogenates exposed to an ultraviolet (UV) treatment did not induce any mortality suggesting that oyster spat mortalities require the presence of a UV sensitive agent. Furthermore, analysis of injected oyster spat revealed the detection of high amounts of OsHV-1 DNA by real-time quantitative PCR. Finally, TEM analysis demonstrated the presence of herpes virus particles. The developed protocol allowed to maintain sources of infective virus which can be useful for the development of further studies concerning the transmission and the development of OsHV-1 infection.     

Epidemiology,molecular virology and diagnostics of Schmallenberg virus,an emerging orthobunyavirus in Europe

After the unexpected emergence of Bluetongue virus serotype 8 (BTV-8) in northern Europe in 2006, another arbovirus, Schmallenberg virus (SBV), emerged in Europe in 2011 causing a new economically important disease in ruminants. The virus, belonging to the Orthobunyavirus genus in the Bunyaviridae family, was first detected in Germany, in The Netherlands and in Belgium in 2011 and soon after in the United Kingdom, France, Italy, Luxembourg, Spain, Denmark and Switzerland. This review describes the current knowledge on the emergence, epidemiology, clinical signs, molecular virology and diagnosis of SBV infection.     

Rice Root Genetic Architecture: Meta-analysis from a Drought QTL Database

During the last 10 years, a large number of quantitative trait loci (QTLs) controlling rice root morphological parameters have been detected in several mapping populations by teams interested in improving drought resistance in rice. Compiling these data could be extremely helpful in identifying candidate genes by positioning consensus QTLs with more precision through meta-QTL analysis. We extracted information from 24 published papers on QTLs controlling 29 root parameters including root number, maximum root length, root thickness, root/shoot ratio, and root penetration index. A web-accessible database of 675 root QTLs detected in 12 populations was constructed. This database includes also all QTLs for drought resistance traits in rice published between 1995 and 2007. The physical position on the pseudo-chromosomes of the markers flanking each QTL was determined. An overview of the number of root QTLs in 5-Mb segments covering the whole genome revealed the existence of “hot spots,” The 32 trait × chromosome combinations comprising six or more QTLs were subjected to a meta-QTL analysis using the software package MetaQTL. The method enabled us both to determine the likely number of true QTLs in these areas using an Akaike information criterion and to estimate their position. The meta-QTL confidence intervals were notably reduced and, for the smallest ones, encompassed only a few genes.     

Self-thinning dynamics in experimental scallop populations

Self-thinning-related mortality has been encountered in extensively cultured scallop populations. Here we report an experiment aimed at studying actual population dynamics of scallops undergoing self-thinning and develop a model of the process. Scallops were kept in small tanks at various initial population densities. Growth and survival were monitored for 39 months. Two cohorts were monitored (cohorts 1 and 2 were 1 and 2 years old, respectively). Growth was density-dependent in cohort 2. Survivorship was high in cohort 1 during the first summer but mass mortality occurred during the second summer. Mortality in cohort 2 peaked during the first summer. In both cohorts, peak mortality occurred at age 2+ years and thus was uncoupled among cohorts. Therefore, negative environmental factors are ruled out as explanations of mortality. Instead, it appears as if self-thinning interacted with some ontogenetic factor. Although cohort 1 was undergoing self-thinning, trends in biomass–density curves were non-monotonous because of mass mortality. In contrast, self-thinning in cohort 2 followed a classical pattern. One possible mechanism for such contrasting differences was that 1+-year-old scallops produced byssal threads and attached to one another during the first year, forming multilayered clumps. This behaviour disappeared during the second year and mass mortality was experienced as scallops adopted a single-layered arrangement. Although details may differ among species, the process depicted above provides a potential trigger to the sequence of events leading to mass mortality in scallop culture. Our model suggests that self-thinning occurred in all density groups, with a common slope but with different elevations in the biomass–density space.