Characterization of the reconstructed 1918 Spanish influenza pandemic virus

The pandemic influenza virus of 1918-1919 killed an estimated 20 to 50 million people worldwide. With the recent availability of the complete 1918 influenza virus coding sequence, we used reverse genetics to generate an influenza virus bearing all eight gene segments of the pandemic virus to study the properties associated with its extraordinary virulence. In stark contrast to contemporary human influenza H1N1 viruses, the 1918 pandemic virus had the ability to replicate in the absence of trypsin, caused death in mice and embryonated chicken eggs, and displayed a high-growth phenotype in human bronchial epithelial cells. Moreover, the coordinated expression of the 1918 virus genes most certainly confers the unique high-virulence phenotype observed with this pandemic virus.     

The Genome sequence of the SARS-associated coronavirus

We sequenced the 29,751-base genome of the severe acute respiratory syndrome (SARS)-associated coronavirus known as the Tor2 isolate. The genome sequence reveals that this coronavirus is only moderately related to other known coronaviruses, including two human coronaviruses, HCoV-OC43 and HCoV-229E. Phylogenetic analysis of the predicted viral proteins indicates that the virus does not closely resemble any of the three previously known groups of coronaviruses. The genome sequence will aid in the diagnosis of SARS virus infection in humans and potential animal hosts (using polymerase chain reaction and immunological tests), in the development of antivirals (including neutralizing antibodies), and in the identification of putative epitopes for vaccine development.     

FTIR-ATR analysis of brewed coffee: effect of roasting conditions

FTIR-ATR was used to study the effect of roasting conditions on the flavor of brewed coffee using Guatemala Antigua coffee beans. The 1800-1680 cm(-1) carbonyl region for vinyl esters/lactones, esters, aldehydes, ketones, and acids was found to provide a flavor-print of the brewed coffee. A study of light, medium, and dark roasts indicated that when the rate of heating to the onset of the first and second cracks was kept constant, the types of carbonyl compounds formed were similar, varying only in their concentration. This difference in concentration is apparently due to the additional heating of the coffee bean beyond the second crack. When the heating rate to the onset of the first and second crack was varied, both the types and concentration of the carbonyl compounds formed during roasting were affected. Thus, heating rates of green coffee beans to the onset of the first and second cracks are important determinants of the basic taste and aroma of brewed coffee.     

Minimizing the Treatments Required to Determine the Responses of Different Crop Genotypes to Potassium Supply

ABSTRACT

Crop genotypes that make best use of potassium (K) fertilizers can promote agricultural sustainability. However, screening germplasm collections for responses to K fertilizers is often laborious and expensive. To reduce costs, the number of K fertilizer treatments required to identify better genotypes should be minimized. This might be achieved by exploiting the mathematical relationships between biomass, plant K content, and K supply. This study employed 14 barley (Hordeum vulgare L.) genotypes growing in a hydroponics system that allowed the K supply to roots to be controlled through the K concentration in a flowing solution. It sought to determine the minimal number of treatments required to model the relationships between (a) shoot biomass and K supply, (b) plant K content and K supply, and (c) shoot biomass and plant K content. The relationships between (a) shoot biomass and K supply and (b) plant K content and K supply for any given genotype could be fitted by Michaelis–Menten equations and each of these could be estimated from data obtained at two, appropriately-chosen, rates of K supply. The relationship between shoot biomass and plant K content could be estimated from these relationships. However, the optimum K supply required for accurate estimates differed between genotypes and whether shoot biomass or plant K content was to be estimated. It is, therefore, suggested that the relationships between shoot biomass, plant K content, and K supply might best be determined from measurements of biomass and K content at three, carefully-selected, rates of K supply.     

Decomposition processes under Bt (Bacillus thuringiensis) maize: Results of a multi-site experiment

The effects of maize expressing the Bacillus thuringiensis Cry1Ab protein (Bt maize) on decomposition processes under three different European climatic conditions were assessed in the field. Farming practices using Bt maize were compared with conventional farming practices using near-isogenic non-Bt maize lines under realistic agricultural practices. The litter-bag method was used to study litter decomposition and nitrogen mineralization dynamics of wheat straw. After 4 months incubation in the field, decomposition and mineralization were mainly influenced by climatic conditions with no negative effect of the Bt toxin on decomposition processes.     

Effect of a polyphenols-enriched chardonnay white wine in diabetic rats

A Chardonnay white wine enriched in polyphenols was obtained by modification of winemaking and characterized by its enrichment in total polyphenolic content (1346 mg/L as compared to 316 mg/L for traditional Chardonnay) and in various individual polyphenols (catechin, epicatechin, procyanidins dimers B1-B4, gallic acid, cafeic acid, and caftaric acid), as determined from HPLC coupled to a diode array detector. The polyphenols-enriched white wine (W) or its ethanol-free derivative (EFW) was then administered by gavage (10 mL/kg, twice a day) for 6 weeks to rats that have been rendered diabetic by a single iv injection of streptozotocin (55 mg/kg). Treatments had no effect on the symptoms associated with hyperglycemia. However, while a reduction in plasma antioxidant capacity was associated with the diabetic state, administration of W or EFW restored plasma antioxidant capacities to a level not significantly different from that of nondiabetic control animals. In addition, the effect of both treatments was manifested by the enlargement of mesenteric arteries, as determined by quantitative histomorphometry. In summary, our study indicates that white wine, when enriched in polyphenols, is able to induce ethanol-independent in vivo effects in a model of insulin-deficient diabetes characterized by a major oxidative stress.     

Interactions between soil micro- and mesofauna and plants in an ecofarming system

Interactions between crops and soil micro- and mesofauna within the root zone were investigated under field conditions on sandy loam on a larger spatial scale and in columns in the laboratory on a smaller spatial scale. During the vegetation period of summer wheat from April to July 1999 soil samples were taken monthly directly from the root zone within plant rows and between plant rows hardly penetrated by roots. Abundances of Enchytraeidae, Collembola, soil flagellates, enzyme activities and contents of total carbon and nitrogen were determined. Additionally, a laboratory experiment was carried out with soil columns. Soil from the field was defaunated and inoculated with soil fauna (Enchytraeidae, Collembola, earthworms) in different combinations. Furthermore, summer wheat was sown. Enzyme activities, soil flagellate abundance and contents of total carbon and nitrogen were measured after 2, 6 and 14 weeks. Our field results revealed considerable interactions between plant roots, sampling date and soil layer affecting Enchytraeidae and Collembola. Within plant rows flagellate numbers correlated higher with N_t and C_t than between plant rows. In the laboratory close relationships between soil fauna as well as enzyme activities and nutrients contents were found within the root zone.     

Management of polyethylene glycol solution aspiration using bronchoscopic lavage in a dog

Polyethylene glycol lavage solutions are used for colonic preparation in dogs and are considered relatively safe. Aspiration is an uncommon but potentially devastating complication of polyethylene glycol administration. Full recovery is possible and often rapid in people treated with bronchoalveolar lavage. A healthy 2-year-old male Beagle used in an endoscopy teaching laboratory aspirated a small amount of polyethylene glycol lavage solution. Although initially appearing unaffected, the dog quickly became hypoxemic. Bronchoscopy was used to lavage the lungs and aspirate tracheal/pulmonary fluid 5 times over the course of 45 minutes. The dog completely recovered. This report presents the successful treatment of polyethylene glycol aspiration in a dog. Although the seriousness of aspiration might not be immediately evident, bronchoscopy and lavage should be pursued because of the rapidly progressive nature of polyethylene glycol-induced pulmonary edema.     

Understory plant diversity and biomass in hybrid poplar riparian buffer strips in pastures

Understory plant biomass, species richness and canopy openness were measured in six-year old hybrid poplar riparian buffer strips, in the understory of two unrelated clones (MxB-915311 and DxN-3570), planted along headwater streams at three pasture sites of southern Quebec. Canopy openness was an important factor affecting understory biomass in hybrid poplar buffers, with lower understory biomass observed on sites and under the clone with lower canopy openness. Although tree size was an important factor affecting canopy openness, relationships between total stem volume and canopy openness, for each clone, also support the hypothesis of a clonal effect on canopy openness. Understory biomass and canopy openness as low as 3.6 g m⁻² and 7.6% in 1 m² microplots were measured under clone MxB-915311 at the most productive site. This reduction of understory plant growth could compromise important buffer functions for water quality protection (runoff control, sediment trapping and surface soil stabilisation), particularly were concentrated runoff flow paths enter the buffer. On the other hand, tree buffers that maintain relatively low canopy openness could be interesting to promote native and wetland plant diversity. Significant positive relationships between canopy openness and introduced species richness (R ² = 0.46, p < 0.001) and cover (R ² = 0.51, p < 0.001) were obtained, while no significant relationship was observed between canopy openness and native (wetland) species richness and cover. These results suggest that planting riparian buffer strips of fast-growing trees can rapidly lead to the exclusion of shade-intolerant introduced species, typical colonisers of disturbed habitats such as riparian areas of pastures, while having no significant effect on native (wetland) diversity. Forest canopy created by the poplars was probably an important physical barrier controlling introduced plant richness and abundance in agricultural riparian corridors. A strong linear relationship (R ² = 0.73) between mean total species richness and mean introduced species richness was also observed, supporting the hypothesis that the richest communities are the most invaded by introduced species, possibly because of higher canopy openness, as seen at the least productive site (low poplar growth). Finally, results of this study highlight the need for a better understanding of relationships between tree growth, canopy openness, understory biomass and plant diversity in narrow strips of planted trees. This would be useful in designing multifunctional riparian buffer systems in agricultural landscapes.