A genome-wide association study of type 2 diabetes in Finns detects multiple susceptibility variants

Identifying the genetic variants that increase the risk of type 2 diabetes (T2D) in humans has been a formidable challenge. Adopting a genome-wide association strategy, we genotyped 1161 Finnish T2D cases and 1174 Finnish normal glucose-tolerant (NGT) controls with >315,000 single-nucleotide polymorphisms (SNPs) and imputed genotypes for an additional >2 million autosomal SNPs. We carried out association analysis with these SNPs to identify genetic variants that predispose to T2D, compared our T2D association results with the results of two similar studies, and genotyped 80 SNPs in an additional 1215 Finnish T2D cases and 1258 Finnish NGT controls. We identify T2D-associated variants in an intergenic region of chromosome 11p12, contribute to the identification of T2D-associated variants near the genes IGF2BP2 and CDKAL1 and the region of CDKN2A and CDKN2B, and confirm that variants near TCF7L2, SLC30A8, HHEX, FTO, PPARG, and KCNJ11 are associated with T2D risk. This brings the number of T2D loci now confidently identified to at least 10.     

Ingestion of oregano extract increases excretion of urinary phenolic metabolites in humans

Despite the promising antioxidant action of Lamiaceae herbs in vitro, human studies on these potential sources of dietary antioxidants have remained scarce. In this work, the phenolic acids recovered in human urine after single ingestion of Origanum onites extract were analyzed. The excretion was increased 4- and 2-fold during 0-24 and 24-48 h of the follow-up, respectively. The mean increase in the excretion of phenolic compounds exceeded the ingested amount of identified phenolic acids. The result can be partly explained by rosmarinic acid, the main identified phenolic constituent in the extract, as well as flavonoids present in minor amounts, presumably being metabolized into a double amount of simple phenolic metabolites. Furthermore, unidentified phenolic constituents in the extract partly contribute to the excretory increase. The main metabolite, p-hydroxybenzoic acid, was excreted rapidly. The results show that constituents of oregano extract and, in particular, their metabolites may contribute to the dietary intake of phenolic antioxidants.     

Effect of Inside-cage and Outside-cage Environment on Behaviour Test Performance of Blue Foxes (Alopex lagopus)

Abstract

In-cage reaction tests, the open field test and daily activity in the home cage were used to assess the effect of the internal design and location of cages on the behaviour of juvenile blue foxes (Alopex lagopus) during the growing season. The inclusion of nest boxes or resting platforms affected the behaviour of farmed blue foxes, but to a lesser extent than did the location of the animal in the cage row, i.e. the environment outside the cage itself. This study demonstrated that the actual environment in which the farm foxes live may be far larger than the cage interior itself, and that attempts to improve housing design should take into consideration the environment outside the cage to a greater extent than has heretofore been the case.     

Effects of sulphuric acid and heavy-metal deposition on frequency of asymptomatic infections of Gremmeniella abietina in Scots-pine seedlings

The isolation frequency of Gremmeniella abietina was measured from asymptomatic 4-year-old Scots-pine seedlings. The seedlings had been subjected to simulated sulphuric deposition (pH 3.1 or 4.1) or control treatments (irrigation with spring water (pH 6), or no irrigation) during the three previous growing seasons. The seedlings were planted in soil originating from two localities with different backround levels of copper (Cu) and nickel (Ni), and the soil was further amended with Cu (63.3 mg/1 of soil) and Ni (20.5 mg/1 of soil), or a combination of the two. The seedlings were inoculated with conidia of G. abietina during their third growing season in the field. Asymptomatic infections of G. abietina were recovered frequently from seedlings that had received water irrigation. The addition of sulphuric acid to the irrigation water, and/or the lowered pH (pH 3.1 and 4.1) resulting from this addition, mitigated the effect of water application. The effect of Ni-treatment on the recovery of G. abietina depended on the irrigation treatment; with no irrigation, Ni-treatment increased isolation frequency, but, in irrigated seedlings the response was the opposite. Only 10.6% of the seedlings had symptoms caused by G. abietina; most of the seedlings had become infected before the application of the various treatments.     

Polyphenol-rich phloem enhances the resistance of total serum lipids to oxidation in men

In humans, polyphenol supplementation studies have resulted in inconsistent findings in lipid peroxidation. Our aim was to investigate the effects of a 4-week consumption of polyphenol-rich phloem on serum lipids and lipid peroxidation in the hydrophilic fraction of serum and on isolated lipoproteins. We conducted a randomized double-blind supplementation study consisting of 75 nonsmoking hypercholesterolemic men. Participants consumed 70 g daily of either rye bread (placebo) or phloem-fortified rye bread containing 31 mg (low polyphenol, LP) or 62 mg (high polyphenol, HP) of catechins. The ex vivo susceptibility of total serum lipids and VLDL and LDL to oxidation after copper induction was measured as a lag time to the maximal oxidation rate at the baseline and after the supplementation. In the HP group, an increase in the oxidation resistance of total serum lipids was observed (11.4%), while no effect was seen in the LP group (-0.8%) or in the placebo group (-1.0%) (p = 0.007). No differences were observed in the oxidation resistance of VLDL and LDL between the study groups. The phloem also increased in vitro oxidation resistance of serum lipids and radical scavenging activity (DPPH.) in a dose-dependent manner. Our results suggest that polyphenols may inhibit lipid peroxidation in the hydrophilic fraction of serum.     

Chlorinated and methylated dibenzothiophenes in sediment samples from a river contaminated by organochlorine wastes

Eleven sediment samples from the lower Kymijoki River were analyzed for the occurrence of polychlorinated and polymethylated dibenzothiophenes (PCDT and PMeDTs). The area was heavily polluted by wastes from a pulp chlorobleachery and by leakage from a factory producing wood preservative chlorophenol formulation Ky-5. Levels in the sediments were from <5 to 400, 200 and 50 pg g^-1 dw for tetra, penta and hexa-CDT, respectively. The concentrations of mono, di, tri and tetra-MeDTs were in the range of 1–5, 5–85, 5–500 and 15–2300 ng g^-1 dw, respectively. PCDT contents in surface sediment (0–3 cm layers) decreased by distance downstream from the bleachery and Ky-5 factory similar to those of the bound polychloroguaiacols (PCG) and polychlorinated dibenzofurans (PCDF). In contrast, PMeDT contents showed a steep increase by distance with a maximum at 32 km downstream.     

Comparison of different egg albumen fractions as sources of ovomucin

Ovomucin was fractionated from whole egg albumen, thick egg albumen, liquid egg albumen, and a liquid egg albumen filtration byproduct by using the isoelectric precipitation method. The amounts of ovomucin measured in the above-mentioned fractions were 280, 340, 500, and 520 mg per 100 g of albumen, respectively. There was great variation between the beta-ovomucin contents of the different albumen fractions. Whole egg albumen contained about 25 mg of beta-ovomucin in 100 g of albumen, whereas thick egg albumen, liquid egg albumen, and the filtration byproduct contained about 1.5, 3, and 5 times more beta-ovomucin, respectively, as compared to whole egg albumen. The results indicate that both the liquid egg albumen fraction and especially the filtration byproduct fraction appear to be potential sources of ovomucin when it is used as an ingredient for functional foods.     

Effects of release timing on migration behaviour and survival of hatchery‐reared Atlantic salmon smolts in a regulated river

In this study, 221 two‐year‐old hatchery‐reared salmon, Salmo salar, smolts were tagged with radio transmitters over a period of three consecutive years and released in the river in groups of 20–21 fish in various dates between late April and early June. Tagged smolts were tracked during their downstream migration in the lower 36‐km stretch of the regulated River Oulujoki, with the focus on the effects of release date, water temperature and river flow on migration behaviour and survival. The results indicate that release timing and river temperature have profound effects on the initiation of migration, swimming speed and survival of released S. salar smolts. Smolts released early in the spring in cold waters ceased migration after brief downstream movement and were vulnerable to predation, whereas the migration speed and survival rates increased markedly for smolts released later in the spring.     

An overview of Cladoceran studies conducted in mine water impacted lakes

International Aquatic Research - Mine-fed waters have been rigorously studied, but most of the ecological research on mine water has been conducted in riverine systems. Lakes, however, are known to...     

Paleolimnological Fingerprinting of the Impact of Acid Mine Drainage After 50 Years of Chronic Pollution in a Southern Finnish Lake

Acid mine drainage (AMD) is acknowledged to have long-lasting impacts on aquatic environments. Hence, mines have also been detected to pose problems years after closure due to the leaching of toxic drainage initiated by sulfide oxidation. To assess the effects of chronic but relatively low volume acid mine drainage derived from the Haveri copper–gold mine operating between 1938 and 1960 on a freshwater bay in southern Finland, we compared cladoceran assemblages from the pre-mining period with contemporary populations using paleolimnological approaches and multiple sediment cores. The cladoceran community of the pre-mining era differed significantly from the contemporary community of the lake (ANOSIM R = 0.91; p = 0.0001), but closely resembled the contemporary community of a nearby non-polluted reference site. Our results suggest that the differences in species compositions between pre-mining and contemporary samples are most likely caused by eutrophication and not by the AMD impact. Because AMD at our study site is most intense during the spring snowmelt period, cladocerans may avoid seasonal pollution peaks through winter dormancy. Possible pollution peaks resulting from heavy rains during the summer may have negative impacts on the cladoceran community, but such short-term impacts are probably rapidly counteracted by immigration from cleaner areas of the lake.