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111.
In alginate-assimilating bacteria, alginate is depolymerized to unsaturated monosaccharide by the actions of endolytic and exolytic alginate lyases (EC 4.2.2.3 and EC 4.2.2.11). The monosaccharide is non-enzymatically converted to 4-deoxy-l-erythro-5-hexoseulose uronic acid (DEH), then reduced to 2-keto-3-deoxy-d-gluconate (KDG) by a specific reductase, and metabolized through the Entner–Doudoroff pathway. Recently, the NADPH-dependent reductase A1-R that belongs to short-chain dehydrogenases/reductases (SDR) superfamily was identified as the DEH-reductase in Sphingomonas sp. A1. We have subsequently noticed that an SDR-like enzyme gene, flred, occurred in the genome of an alginolytic bacterium Flavobacterium sp. strain UMI-01. In the present study, we report on the deduced amino-acid sequence of flred and DEH-reducing activity of recombinant FlRed. The deduced amino-acid sequence of flred comprised 254 residues and showed 34% amino-acid identities to that of A1-R from Sphingomonas sp. A1 and 80%–88% to those of SDR-like enzymes from several alginolytic bacteria. Common sequence motifs of SDR-superfamily enzymes, e.g., the catalytic tetrad Asn-Lys-Tyr-Ser and the cofactor-binding sequence Thr-Gly-x-x-x-Gly-x-Gly in Rossmann fold, were completely conserved in FlRed. On the other hand, an Arg residue that determined the NADPH-specificity of Sphingomonas A1-R was replaced by Glu in FlRed. Thus, we investigated cofactor-preference of FlRed using a recombinant enzyme. As a result, the recombinant FlRed (recFlRed) was found to show high specificity to NADH. recFlRed exhibited practically no activity toward variety of aldehyde, ketone, keto ester, keto acid and aldose substrates except for DEH. On the basis of these results, we conclude that FlRed is the NADH-dependent DEH-specific SDR of Flavobacterium sp. strain UMI-01. 相似文献
112.
113.
Ikue Murata Sigefumi Saruki Katsuyoshi Kubota Sachiko Inoue Naoaki Tashiro Tsutomu Enoki Yasuhiro Utsumi Susumu Inoue 《Journal of Forest Research》2009,14(5):296-301
Effects of sika deer (Cervus nippon) and dwarf bamboo (“sasa;” Sasamorpha borealis) on seedling emergence and survival were investigated in cool-temperate mixed forests in the Kyushu mountain range, Japan.
We compared the effects of sika deer between two sites with different sika deer densities. One site (no-sasa forest) has sparse
cover of S. borealis and a high density of sika deer, and the other site (sasa forest) has dense cover of S. borealis with a low density of sika deer. In the no-sasa forest, more seedlings emerged and the survival rate of the seedlings was
higher compared with the sasa forest. Compared with the sasa forest, the canopy in the no-sasa forest was more open, the organic
layer was shallower and drier, the mean daily soil temperature was higher, and soil temperature fluctuated more widely. Those
environmental parameters did not differ between unfenced and fenced plots. The comparison between the sasa and no-sasa forests
suggested that removal of S. borealis by sika deer had an indirect positive effect on seedling emergence and survival. However, the fenced-plot experiments indicated
that sika deer inhibited seedling emergence and survival. These contradictory conclusions could result from the much larger
negative effects of S. borealis on seedling emergence and survival compared with the effects of sika deer browsing. 相似文献
114.
We determine the relationships of culm surface area to other culm dimensions for one of the largest bamboo species, Phyllostachys pubescens Mazel ex Houzeau de Lehaie. A total number of 150 sample culms were collected from a stand of P. pubescens in Mt. Toshima, Kumamoto Prefecture, western Japan. The culm surface area for each sample was calculated, and then the relationships
of the culm surface area to basal area and product of diameter at breast height (dbh) and culm height were analyzed. The relationship
between culm surface area and basal area could be described successfully by the power equation, whereas there was a linear
relationship of culm surface area to product of dbh and height. Although the regression equations determined here would be
useful in estimating culm surface area of P. pubescens, it is necessary to select an appropriate equation depending on the purpose and available time and labor. 相似文献
115.
Daisuke Kamikawa Katsushi Kuroda Mariko Inoue Satoshi Kubo Takahiro Yoshida 《Journal of Wood Science》2009,55(6):453-457
In this study, the combustion properties of wood pellets were evaluated using a cone calorimeter, which is usually used to
verify the fireproof performance of architectural materials. In contrast to the conventional methods including combustion
calorimetry and thermogravimetric analysis, a cone calorimeter can estimate various combustion parameters, e.g., changes of
heat release rate (HRR), weight decrease during burning process, ignition time, and flame-out and burn-out time as well as
combustion heat, in a single experimental run with no pretreatment for sample size reduction. The following results were obtained
by the combustion test of Japanese cedar (Cryptomeria japonica) and larch (Larix kaempferi) wood pellets having various volume densities. Ignition time of wood pellet became slower with increasing volume density
of the pellets. However, burn-out time was not clearly correlated to volume density. The heat release values measured by cone
calorimeter could be comparable to those from the conventional combustion calorimeters, and flaming heat values of the bark
pellets were always lower in comparison with pellets made of xylem, although total heat release was almost the same. 相似文献
116.
Water adsorption capacities were evaluated for moso bamboo samples that were heated at 200°C for various times and conditioned
in a closed container at 97% relative humidity at 20°C. Logistic regression analysis was used for curve fitting to the adsorption
data and its parameters were analyzed. These parameters were compared with those derived previously from the Dubinin and Radushkevich
theory. The properties of the heat-treated samples changed after 5 h of heating. With less than 5 h of heating, hydroxyl groups
provided the main adsorption sites but their numbers decreased on heating. After 5 h, gasifi cation of the bamboo increased
and capillaries formed.
Part of this article was presented at the 57th Annual Meeting of the Japan Wood Research Society, Hiroshima, August 2007 相似文献
117.
118.
<Emphasis Type="Italic">Turnip yellow mosaic virus</Emphasis> isolated from Chinese cabbage in Japan
Namiko Kirino Koji Inoue Koji Tanina Yuya Yamazaki Satoshi T. Ohki 《Journal of General Plant Pathology》2008,74(4):331-334
A virus that caused a distinct yellow mosaic was isolated in Okayama, Japan from Chinese cabbage (Brassica rapa L., Pekinensis group). The virus, with spherical particles ca. 28 nm in diameter, was mechanically transmissible only to
cruciferous species. From the host range, characteristic morphology of virus particles, serology and sequence analysis of
coat protein gene, the causal virus was identified as Turnip yellow mosaic virus (TYMV). Seed transmission of TYMV at 0–2.2% in Chinese cabbage was confirmed. This report is the first of TYMV from Chinese
cabbage and in Japan.
The nucleotide sequence data reported are available in the DDBJ/EMBL/GenBank databases as accessions AB358971 and AB358972. 相似文献
119.
Masaru Fujinoki Tomoko Koito Suguru Nemoto Mitsugu Kitada Yoko Yamaguchi Susumu Hyodo Hideki Numanami Nobuyuki Miyazaki Koji Inoue 《Fisheries Science》2012,78(1):139-146
Various invertebrates inhabiting hydrothermal vents harbor thiotrophic endosymbionts that provide the host with nutrients
and are possibly involved in the detoxification of harmful sulfides. In this study, we first determined the partial 16S rRNA
gene sequence of the thiotrophic symbiont of the deep-sea mussel Bathymodiolus septemdierum, a dominant species at hydrothermal vents in the Izu–Ogasawara (Bonin) area. We then designed a new probe, Bsob692, for fluorescent in situ hybridization (FISH) using regions completely conserved among thiotrophic symbionts of all
bathymodiolin mussels and established the protocol for FISH to compare the distribution and amount of the symbiont using an
image analysis program that is commercially available. We compared fluorescent intensity in the gill of the mussels collected
at different sites and found a higher intensity in specimens collected from a site with higher sulfide concentration. We also
compared mussels reared in the presence and absence of sulfide and found that the former had a higher fluorescent intensity. 相似文献
120.
Involvement of a vascular hypersensitive response in quantitative resistance to Ralstonia solanacearum on tomato rootstock cultivar LS‐89
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K. Nakaho S. Seo K. Ookawa Y. Inoue S. Ando Y. Kanayama S. Miyashita H. Takahashi 《Plant pathology》2017,66(1):150-158
Ralstonia solanacearum causes bacterial wilt disease in Solanaceae spp. Expression of the Phytophthora inhibitor protease 1 (PIP1) gene, which encodes a papain‐like extracellular cysteine protease, is induced in R. solanacearum‐inoculated stem tissues of quantitatively resistant tomato cultivar LS‐89, but not in susceptible cultivar Ponderosa. Phytophthora inhibitor protease 1 is closely related to Rcr3, which is required for the Cf‐2‐mediated hypersensitive response (HR) to the leaf mould fungus Cladosporium fulvum and manifestation of HR cell death. However, up‐regulation of PIP1 in R. solanacearum‐inoculated LS‐89 stems was not accompanied by visible HR cell death. Nevertheless, upon electron microscopic examination of inoculated stem tissues of resistant cultivar LS‐89, several aggregated materials associated with HR cell death were observed in xylem parenchyma and pith cells surrounding xylem vessels. In addition, the accumulation of electron‐dense substances was observed within the xylem vessel lumen of inoculated stems. Moreover, when the leaves of LS‐89 or Ponderosa were infiltrated with 106 cells mL?1 R. solanacearum, cell death appeared in LS‐89 at 18 and 24 h after infiltration. The proliferation of bacteria in the infiltrated leaf tissues of LS‐89 was suppressed to approximately 10–30% of that in Ponderosa, and expression of the defence‐related gene PR‐2 and HR marker gene hsr203J was induced in the infiltrated tissues. These results indicated that the response of LS‐89 is a true HR, and induction of vascular HR in xylem parenchyma and pith cells surrounding xylem vessels seems to be associated with quantitative resistance of LS‐89 to R. solanacearum. 相似文献