Understanding genetic diversity in blackgram [Vigna mungo (L.) Hepper] collections of Indian National Genebank

Genetic Resources and Crop Evolution - Blackgram [Vigna mungo (L.) Hepper] is a protein rich pulse crop of Indian origin. The crop is cultivated in diverse range of agro-ecological regions,...     

Protection of mice against <Emphasis Type="Italic">Brucella abortus 544</Emphasis> challenge by vaccination with recombinant OMP28 adjuvanted with CpG oligonucleotides

Brucella abortus, a gram negative, facultative intracellular pathogen causes brucellosis in many animal species and humans. Although live, attenuated vaccines are available against this infection, they suffer from certain limitations. Therefore, the development of an effective subunit vaccine against brucellosis is an area of intense research. The outer membrane proteins (OMPs) of Brucella species have been extensively studied for its immunogenicity and protective ability. We have investigated the potential of CpG ODN to enhance the immunogenicity and protective efficacy of recombinant 28 kDa outer membrane protein (rOMP28) of Brucella melitensis. The study demonstrated vigorous immunoglobulin G (IgG) response of OMP28. The administration of rOMP28 with CpG caused increased cell mediated immune response in terms of induced IgG2a, T-cell proliferation and up-regulation of type I cytokine expression. In contrast, the free antigen suppressed the interferon gamma (type I cytokine) production on in-vitro stimulation of spleenocytes. The result indicates the role of OMP28 in the down regulation of IFN-γ production. Moreover, the B. abortus S-19 vaccinated mice showed highest production of IL-4 and IFN-γ. The protective ability of the antigen was evaluated by systemic bacterial clearance after challenging the mouse with B. abortus 544 pathogen. The level of protection was significant in rOMP28+CpG treated mice but was lower than the required level. The results of the present study indicate that rOMP28 could be an immunogen capable of inducing both humoral and cellular immune response. The humoral response was biased towards Th1 type when it was co-administered with CpG.     

Cryopreservation of silver barb Puntius gonionotus (Bleeker) spermatozoa: effect of extender composition,cryoprotective agents and freezing rate on their postthawing fertilization ability

The effects of extender composition, cryoprotectant concentration and freezing and thawing on the fertilization efficiency of cryopreserved spermatozoa of Puntius gonionotus were evaluated. Computer‐aided motility analysis of semen was conducted to check the suitability of spermatozoa for cryopreservation after mixing with different extenders and cryoprotective agents (CPAs). Extender‐4 with an osmolality 260 mOsmol kg⁻¹and pH 7.6 was used for the cryopreservation study. Among the CPAs, dimethyl sulphoxide (DMSO) was least toxic and more than 60% fertilization was achieved when used at 1.4 M at 0 °C for 10 and 30 min, whereas the toxicity of all CPAs to spermatozoa was evident when tested at 30 °C. Semen frozen at −16 °C min⁻¹ with 1.4 M DMSO showed 70% fertilization, which was significantly higher (P<0.05) than other freezing rates. Samples thawed at 35 °C water showed a fertilization rate comparable with that of fresh semen. Computer‐assisted semen analysis of fresh and frozen semen after thawing showed variations in different types of motility in spermatozoa and in their class. There was no significant difference in motility before or after cryopreservation; however, significant differences could be observed in the average path velocity (VAP), straight line velocity (VSL) and curve linear velocity (VCL). Semen of silver barb could be cryopreserved with extender‐4 by addition of 1.4 M DMSO to a final cryopreservation medium (MED 2) cooled at a rate of −16 °C min⁻¹, stored in liquid nitrogen (−196 °C) and utilized after thawing at 35±2 °C.     

Changes in soil and water quality at sediment–water interface of Penaeus vannamei culture pond at varying salinities

The health of the pond environment in shrimp farming is important for sustainable and profitable aquaculture, in which sediment–water interface is the most important influencing area. With this objective, the key parameters of water and sediment at the interface was studied in shrimp ponds with varying salinities and compared with the surface water and soil to understand the variations and the underlying causes. Total ammonia nitrogen and total alkalinity were higher in water at the interface as compared to surface water, whereas pH, nitrite, oxide forms of nitrogen (NO₃), phosphorus (PO₄) and oxidizing bacteria were observed to be lower. There was no significant difference with respect to macrominerals such as sodium, potassium, calcium and magnesium between water at the interface and surface. These changes are profoundly influenced by the uppermost 1.0‐cm thick sediment layer, where the maximum transition of nutrients takes place with the water column. The outcome of the study highlights the effectiveness of water sampling for metabolites at the interface, which reflects at an early stage any potential deterioration of pond environment, which will help the farmer to initiate timely mitigation measures.     

Biosorption of Zn (II) onto the Surface of Non-living Biomasses: A Comparative Study of Adsorbent Particle Size and Removal Capacity of Three Different Biomasses

Present research has delineated the biosorption potential of three different nonliving biomasses namely eucalyptus bark saw dust, mango bark saw dust, and pineapple fruit peel with respect to Zn (II) ion removal from liquid phase through batch experiments. The efficacy of Zn (II) ion biosorption onto surface of biosorbents was judged and correlated with biosorbent particle size, surface chemistry, and surface texture. Maximum metal ion uptake capacity, percentage removal, and minimum equilibrium concentration as 1.688 mg/g, 84.4%, and 1.56 mg/l, respectively, was obtained using eucalyptus bark saw dust mediated biosorption followed by mango bark saw dust as 1.028 mg/g, 51.4%, and 4.867 mg/l and pineapple fruit peel as 0.45 mg/g, 22.9%, and 7.71 mg/l, respectively, at a particle size of 0.5 mm. Additionally, present investigation also proved that biosorption efficiency and metal ion interaction with adsorbent surface also depends upon presence of functional groups involved in metal ion adsorption and surface porosity.     

Contingency nature of Helicobacter bizzozeronii oxygen-insensitive NAD(P)H-nitroreductase (HBZC1_00960) and its role in metronidazole resistance

Genomic analysis of a metronidazole resistant H. bizzozeronii strain revealed a frame length extension of the oxygen-insensitive NAD(P)H-nitroreductase HBZC1_00960 (RdxA), associated with the disruption of the C-terminal cysteine-containing conserved region (IACLXALGK). This was the result of the extension (from C₈ to C₉) of a simple sequence cytosine repeat (SSCR) located in the 3’ of the gene. A 3'' SSCR is also present in the rdxA homolog of H. heilmannii sensu stricto, but not in H. pylori. We showed that in the majority of in vitro spontaneous H. bizzozeronii metronidazole resistant mutants, the extension of the 3′ SSCR of rdxA was the only mutation observed. In addition, we observed that H. bizzozeronii ΔrdxA mutant strain showed the same MIC value of metronidazole observed in the spontaneous mutants. These data indicate that loss of function mutations in rdxA and in particular the disruption of the conserved region IACLXALGK is associated with reduced susceptibility to metronidazole in H. bizzozeronii. Slipped-strand mispairing of the SSCR located in the 3′ of the H. bizzozeronii rdxA appears to be the main mechanism. We also observed that H. bizzozeronii acquires resistance to metronidazole at high mutation rate, and that serial passages in vitro without selection induced an increased level of susceptibility. In conclusion, contrary to what was previously described in H. pylori, the H. bizzozeronii rdxA appears to be a contingency gene which undergoes phase variation. The contingency nature of rdxA should be carefully considered when metronidazole is used in the treatment of H. heilmannii-associated gastritis.     

Methane emission from two Indian soils planted with different rice cultivars

In a greenhouse study, methane emissions were measured from two diverse Indian rice-growing soils planted to five rice cultivars under similar water regimes, fertilizer applications and environmental conditions. Significant variations were observed in methane emitted from soils growing different cultivars. Total methane emission varied between 8.04 and 20.92gm^–2 from IARI soil (Inceptisol) and between 1.47 and 10.91gm^–2 from Raipur soil (Vertisol) planted to rice. In all the cultivars, emissions from IARI soil were higher than from Raipur soil. The first methane flux peak was noticed during the reproductive phase and the second peak coincided with the grain-ripening stage of the rice cultivars. Received: July 7, 1996     

Simulation of salt and water movement and estimation of water productivity of rice crop irrigated with saline water

The HYDRUS-ID model was experimentally tested for water balance and salt build up in soil under rice crop irrigated with different salinity water (ECiw) of 0.4, 2, 4, 6, 8 and 10 dS m⁻¹ in micro-lysimeters filled with sandy loam soil. Differences of means between measured (M) and HYDRUS-1D predicted (P) values of bottom flux (Q _o) and leachate EC as tested by paired t test were not found significant at P = 0.05 and a close agreement between RMSE values showed the applicability of the HYDRUS-1D to simulate percolation and salt concentration in the micro-lysimeters under rice crop. Potential ET values of rice as obtained from CROPWAT matched well with model predicted and measured one at all ECiw treatments. The model predicted root water uptake varied from 66.1 to 652.7 mm and the maximum daily salt concentration in the root zone was 0.46, 2.3, 4.5, 6.7, 8.4 and 10.2 me cm⁻³ in 0.4, 2, 4, 6, 8 and 10 dS m⁻¹ ECiw treatments, respectively. The grain production per unit evapotranspiration ( \textWP_{\textET\texta} {\text{WP}}_{{{\text{ET}}_{\text{a}} }} ) value of 2.56 in ECiw of 0.4 dS m⁻¹ treatment declined to 1.31 with ECiw of 2 dS m⁻¹. The \textWP_{\textET\texta} {\text{WP}}_{{{\text{ET}}_{\text{a}} }} reduced to one-fifth when percolation was included in the productivity determination. Similarly, the water productivity in respect of total dry matter production (TDM) was also reduced in different treatments. Therefore, the model predicted values of water balance can be effectively utilized to calculate the water productivity of rice crop.     

Identification of fusarium head blight resistance related metabolites specific to doubled-haploid lines in barley

Fusarium head blight (FHB) and deoxynivalenol (DON) mycotoxin produced by Fusarium graminearum reduce barley yield and quality worldwide. Hundreds of quantitative trait loci (QTLs) have been identified in wheat and barley but their functions are largely unknown. Metabolic profiling was applied to better understand the mechanisms of resistance and to identify potential FHB resistance biomarker metabolites in barley. Four FHB resistant (H15-2, H148-3, H203-2 and H379-2) and one susceptible (H97-2), two-row, purple, doubled-haploid (DH) lines of barley were inoculated with either the pathogen or mock-solution. The disease severity quantified as the area under the disease progress curve (AUDPC) significantly varied between the resistant and susceptible genotypes, but not among the resistant genotypes. Neither the amount of DON nor the detoxified product, proportion of total DON, was significant among lines. The resistance related (RR, higher in abundance in resistant than in susceptible) metabolites varied in numbers and fold changes among the DH resistant lines. A total of 144 RR constitutive (RRC) and 167 RR induced (RRI) metabolites were selected, of which 39 and 37, respectively, were putatively identified. These RR metabolites mainly belonged to six chemical groups: phenylpropanoids, hydroxycinnamic acid amides, flavonoids, fatty acids, terpenoids, and alkaloids. The specific RR metabolites identified in each DH line, the possible mechanisms of resistance in each and their use as potential biomarkers are discussed.     

Effect of biofilm on water quality and growth of <Emphasis Type="Italic">Etroplus suratensis</Emphasis> (Bloch, 1790)

An experiment was conducted to compare the efficiency of biofilm production in natural and artificial substrates and to study their effect on water quality and growth of Etroplus suratensis. Four different substrates were used for biofilm formation: paddy straw (T1), sugarcane bagasse (T2), polyvinylchloride (PVC) pipe (T3) and plastic sheet (T4). The experiment was carried out in mud-bottomed fibre-reinforced plastic tanks (300 L) in triplicates. About 3000 cm² surface area (600 g) of each substrate was suspended in water supplemented with fertilizers. Only cow dung and urea were applied in control tanks. The tanks were stocked with 25 fishes with average weight of 9.1 ± 0.22 g. The overall mean value of heterotrophic bacteria in substrate was found higher in straw followed by bagasse, plastic and PVC. The dominant genera of bacteria in the substrate were Bacillus, Pseudomonas and Micrococcus in that order of preponderance. The mean phytoplankton and zooplankton density on the substrates were higher in bagasse followed by straw, plastic and PVC. The biofilm developed on the substrate significantly reduced the ammonia nitrogen and nitrite-nitrogen content of water. The growth of fishes was significantly (P < 0.05) higher in substrate-based treatments than that in the control with better results in bagasse followed by straw, plastic and PVC. The conclusions of the present study are that biofilm produced on natural substrates, especially on bagasse, enhanced growth of E. suratensis and reduced the necessity of water exchange during the culture, which certainly decreases the cost of Etroplus production.