Effect of body mass index on severity and prevalence of varicocele

Varicocele is classified as grade I-III regarding its severity. This study was aimed to determine the correlation between height and weight with varicocele grade in 18-30 years age group. We enrolled 400 persons aged 18-30 years referred to the specialist's clinics of Tabriz Medical Sciences University or Medical Commission Since Sep. 2004 to Mar. 2005. First we divided the volunteers in two groups including Varicocele Group and Non-varicocele Group, then varicocele patients were classified to three grades considering the severity of the disease: severe (Grade III), moderate (Grade II) and mild (Grade I). Finally, the correlation between height, weight and Body Mass Index (BMI) was evaluated. There was a significant relation between height and grades of left-side varicocele; in other words the severity of disease was increased with height (p = 0.004). Also, height increased the prevalence ofvaricocele (p = 0.011). On the other hand, low weight and BMI increased the prevalence of varicocele (p = 0.000, p = 0.004) but did not affect the severity of disease (p = 0.364, p = 0.172). In conclusion, the height of patients directly affected the prevalence and severity of left-side varicocele which probably is related to length of left internal spermatic veins in these patients and increased hydrostatic pressure in taller patients. Also, the weight and BMI is effective on the prevalence of varicocele. It seems that slim and tall persons will benefit from evaluation while puberty.     

A new look at the genus Crocus L. phylogeny and speciation: Insight from molecular data and chromosome geography

Genetic Resources and Crop Evolution - The genus Crocus of the family Iridaceae is a monophyletic genus with over 100 species. Due to the high degree of hybridization and the changes in the number...     

Digital assessments of soil organic carbon storage using digital maps provided by static and dynamic environmental covariates

Understanding the vertical and lateral distribution of soil organic carbon (SOC) and soil organic carbon density (SOCD) is indispensable for soil use and environmental management because of their vital role in soil quality assessments. Primarily, they are needed in calculating soil organic carbon storage (SOCS). The objective of this research was to provide digital maps of SOC and SOCD variation as well as their uncertainties at multiple standardized depths (H1: 0–5, H2: 5–15, H3: 15–30, H4: 30–60 and H5: 60–100 cm) using a parsimonious model with optimized terrain-related attributes and satellite-derived data. SOCS were evaluated at soil subgroup levels. An area of about 808 km² with varying elevation, plant cover and lithology from the Miandoab region, West Azerbaijan Province, Iran was selected as a case study area. A total of 386 soil samples were collected from 104 profiles comprising various soil genetic horizons. A continuous spline function was then fitted to the target properties in advance of creating a dataset at five standard depth intervals (following the GlobalSoilMap project). These were then grouped into three classes including top (H1), middle (H2, H3 and H4) and bottom (H5) depths to ease interpretation. Static and dynamic covariates (30-m resolution) were derived from a digital elevation model (DEM) and a suite of Landsat-8 spectral imageries, respectively. Four candidate models including stepwise multiple linear regression (SMLR), random forest (RF), cubist (CU) and extreme gradient boosting (XGBoost) Tree were tested in this study. Finally, the digital maps at 30-m resolution of SOC and SOCD and their uncertainties were prepared using the best-fit model and the bootstrapping method, respectively. Four soil subgroups (Gypsic Haploxerepts, Typic Calcixerepts, Typic Haploxerepts and Xeric Haplocalcids) were identified across the study area. The covariates had variable contributions on the evaluated models. The XGBoost Tree model generally outperformed other models for prediction of SOC and SOCD (R² = 0.60, on average). Regardless of soil subgroups, the uncertainty analysis showed that the SOCD map had a low prediction interval range value indicating high accuracy. Additionally, the highest SOCS and SOCD was observed at the top followed by middle and bottom depths in the study area. All subgroups exhibited a decreasing trend of SOCD with increasing depth. A similar trend was also observed for SOCS. The highest SOCD (on average) was observed in Gypsic Haploxerepts (4.71 kg C/m²) followed by Typic Calcixerepts (4.46 kg C/m²), Typic Haploxerepts (4.45 kg C/m²) and Xeric Haplocalcids (4.40 kg C/m²). Overall, the SOCS normalized by area within soil order boundaries was greater in Inceptisols than Aridisols across the study area. The findings of this study provide critical information for sustainable management of soil resources in the area for agricultural production and environmental health in the Miandoab region of Iran.     

Isolation and identification of effective cellulolytic bacteria in composting process from different sources

Cellulolytic bacteria have a bio-activating role in the composting process. A study was carried out to isolate and identify cellulolytic bacteria from various sources. The isolates were cultured in the carboxymethyl cellulose (CMC) agar medium and incubated at 30°C for 3–7 days. Based on morphological characteristics of the isolates, maximum diameter of a clear zone around the colony and maximum cellulolytic activity, eight isolate were selected for further studies regarding composting experiments.

Molecular tests based on PCR amplification and sequencing of 16S rRNA gene of isolates showed the closest phylogenetic similarity with the species of Stenotrophomonas rhizophila DSM14405 (99.8%), Brevibacterium halotolerans DSM8802 (99.6%), Achromobacter marplatensis B2 (99.8%), Bacillus methylotrophicus CBMB205 (100%), Pseudomonas azotoformans IAM 1603 (99.7%), Bacillus sonorensis NBRC 101234 (99.8%), Bacillus subtilis KCTC 13429 (100%) and Ochrobactrum thiophenivorans DSM 7216 (99.3%). The study of the isolates impact on the composting of palm wastes in a randomized complete block design with 11 treatments in 3 replications showed that strain IB (B. methylotrophicus) caused a significant decrease in C:N ratio (58%). The increasing of microbial respiration compared with control after 30 days incubation at 37°C showed that the B. methylotrophicus strain IB with cellulolytic characteristics can be applied to hydrolysis of cellulosic biomass in the composting processes.     

Stimulating and toxicity effects of nickel on growth,yield, and fruit quality of cucumber supplied with different nitrogen sources

Limited information is available on biological effects of various levels of nickel (Ni) (deficiency to toxicity levels) on growth and yield of certain crops, particularly vegetables. In this sand‐culture study, we investigated the effects of four levels of Ni (0, 50, 100, and 200 μM) on growth, yield, and fruit‐quality attributes of two cucumber cultivars (Cucumis sativus L. cvs. Super Dominus and Negin) supplied with urea or NH₄NO₃ as nitrogen source. Addition of 50 μM Ni to the nutrient solution resulted in a significant increase of shoot and root dry‐matter yield of cv. Negin although this increase was greater in the urea‐fed plants than those fed with NH₄NO₃. In both cultivars, addition of 50 μM Ni increased urease activity and thereby decreased the urea concentration in the urea treatment. Addition of 100 and 200 μM Ni caused a significant decrease in root and shoot growth of cucumber although this decrease was insignificant for cv. Super Dominus in the 100 μM treatment. The highest fruit yield, total soluble solids (TSS), and fruit firmness were achieved at the 50 μM Ni treatment. Regardless of nitrogen source, Ni addition proportional to the concentration used increased leaf Ni concentration and fruit acid ascorbic concentration. The concentration of Ni required for optimum growth and yield of cucumber varied with cultivars. The level of 50 μM was sufficient for optimum growth of cv. Negin in nutrient‐solution culture while lower concentration of Ni was required for cv. Super Dominus. While the beneficial effects of sufficient levels of Ni on growth and yield of urea‐fed plants was greater than with NH₄NO₃‐fed plants, the toxic effects of Ni in these plants were also greater.     

Soil microbial biomass, activity and community composition in adjacent native and plantation forests of subtropical Australia

Purpose

Soil nitrogen (N) availability is a critical determinant of plantation productivity in subtropical Australia and is influenced by the soil microbial community. The size, structure and function of the soil microbial community can be impacted by land-use change and residue management. The objectives of this study were to examine the impact of land-use change from (1) native forest (NF) to first rotation (1R) hoop pine plantation and (2) 1R hoop pine plantation to second rotation (2R) hoop pine plantation on the soil microbial community. The impact of residue management on the soil microbial community was also investigated in the 2R forest, where soil microbial parameters were measured in tree rows (2R-T) and windrows (2R-W). In addition, relationships between soil microbial parameters and soil N parameters were investigated.

Materials and methods

Each of the four treatments (NF, 1R, 2R-T and 2R-W) had five 24-m² replicate plots from which 15 soil cores were collected and bulked at three depths (0–10, 10–20, 20–30 cm). Microbial biomass carbon (MBC) and N (MBN) and soil respiration were measured on field moist soils. In addition, carbon (C) source utilisation patterns were assessed using the whole soil MicroResp? technique (Campbell et al. 2003).

Results and discussion

Results indicate that the land-use change from NF to 1R hoop pine plantation significantly reduced MBC, respiration rate, soil total C and total N. Furthermore, the land-use change appeared to have a significant impact on the soil microbial community composition measured using MicroResp? profiles. Land-use change from 1R to 2R hoop pine plantation resulted in a decline in total C and MBN and a shift in microbial community composition. When compared to the 2R-T soils, the 2R-W soils tended to have a greater microbial biomass and respiration rate. Residue management also influenced the microbial community composition measured in the MicroResp? profiles.

Conclusions

Results indicate that land-use change had a significant impact on the soil microbial community, which was likely to be related to shifts in the quality and quantity of organic inputs associated with the change in land use. This may have significant implications for the long-term productivity of the soil resource. Further studies are required to confirm a difference in microbial community composition associated with residue management. In addition, long-term experiments in subtropical Australia are necessary to verify the results of this snapshot study and to improve our understanding of the impact of single-species plantation forestry and residue management on the soil microbial community, soil N dynamics and ultimately the long-term sustainability of the soil resource.     

Suppression of the fungal pathogen Magnaporthe grisea by Stenotrophomonas maltophilia,a seed-borne rice (Oryza sativa L.) endophytic bacterium

The present work was carried out to study the potential of bacteria isolated from the seeds of rice plant for the biocontrol of five rice pathogenic fungi. Eleven endophytic bacteria isolated from rice seeds were evaluated for their antagonistic potential. Of five pathogens studied, only the growth of Magnaporthe grisea was inhibited by one bacterial isolate in an in vitro dual culture assay. Based on 16S rDNA sequence analysis, and biochemical and morphological characteristics, this strain was closely related to Stenotrophomonas maltophilia. We named this new isolate to be S. maltophilia SEN₁ (seed endophyte). This isolate was further tested for the production of volatile and diffusible antibiotics against M. grisea, for plant growth-promoting (PGP) traits and colonization of some rice cultivars. In addition, S. maltophilia SEN₁ was tested for its ability to promote plant growth and reduce the incidence of rice blast disease under greenhouse conditions. When applied to the soil, this isolate increased seedling growth and suppressed blast disease in plants of three studied cultivars. This study also showed this isolate could colonize the root interior of other rice cultivars. This study indicates that the S. maltophilia isolate studied has an excellent potential to be used as biocontrol agents of M. grisea or biofertilizer under in vitro and in vivo conditions.     

The effect of pod elimination on water stress in relation to antioxidant enzymes activity and proline in three annual medics species

Despite the importance of pod removal in the seeds of annual medics, there have been few studies carried out in this area. In this research, the role of pod removal in growth and biochemical enzyme activities was examined in three annual medic species during drought stress and subsequent recovery. This study was carried out as a factorial experiment based on a completely randomized design. The treatments were carried out on annual medic species of three levels: Medicago rigidula, M. scutellata, M. polymorpha, presence or removal of the pod and water stress. Water stress was split into the following four levels: 100%, 80%, 60%, and 40% field capacity (FC) during the stress period. The results showed that drought stress and subsequent recovery increased proline content and antioxidant enzyme activity. The highest proline content and antioxidant enzyme activity was observed in M. Scutellata. However, the rate at which proline increased, decreased at 40% FC whereas the antioxidant enzyme reached their highest activity at 40% FC. The antioxidant enzymes’ activity and proline content without the pod experiment were significantly higher than with the pod experiment. Since the activation of an antioxidant system and the increasing of the proline content helps the plants with stress induced damages, our results indicated that elimination of pods of annual medics before sowing helps seedlings to perform better under drought stress. This data is useful to gain a better understanding of the physiological basis of the changes in drought resistance as well as the crop breeding projects.     

Response of black, cranberry, kidney, and white bean to linuron

Dry bean producers in Ontario, Canada, have few herbicide options available for annual broad-leaved weed management and there is little information on the tolerance of dry bean to linuron. The tolerance of black, cranberry, kidney, and white bean to the pre-emergence (PRE) application of linuron at the rates of 0, 500, 1000, 1500, 2000, and 2500 g ai ha⁻¹ was evaluated in field studies conducted in 2005 and 2006 at Exeter and in 2006 at Ridgetown, Ontario. The four market classes differed in their response to linuron. Cranberry and kidney bean were more tolerant to the PRE application of linuron than black and white bean. Linuron applied PRE caused as much as 12% injury in cranberry and kidney bean, 47% injury in black bean, and 56% injury in white bean. Linuron applied PRE at 500–2500 g ai ha⁻¹ had no effect on the height of cranberry and kidney bean but decreased the height by 7, 8, and 15% in black bean and by 10, 13, and 23% in white bean at 1500, 2000, and 2500 g ai ha⁻¹, respectively. Linuron applied PRE at the rates evaluated did not cause any adverse affect on the yield of cranberry, kidney, and white bean but black bean yield was reduced by 16% at 2500 g ai ha⁻¹. Based on these results, there is not an adequate margin of crop safety for the PRE application of linuron in black and white bean at rates >1000 g ai ha⁻¹. However, there is a potential for the use of linuron PRE for weed management in cranberry and kidney bean at the rates evaluated.