Inversion of a canopy reflectance model using hyperspectral imagery for monitoring wheat growth and estimating yield

Applications of hyperspectral remote sensing data to derive relevant properties for precision agriculture are described. Green leaf area index, fraction of senescent material and grain yield are retrieved from the hyperspectral data. Two sensors were used to obtain these data; the airborne visible/infrared imaging spectrometer AVIS and the space-borne compact high-resolution imaging spectrometer CHRIS; they show the applicability of the methods to different spatial scales. In addition, the bi-directional observation capability of the CHRIS sensor is used to derive information about the average leaf angle of the canopies which are used to link canopy structure with phenological development. Derivation of the canopy properties, green leaf area index and fraction of senescent material was done with the radiative transfer model, SLC (soil–leaf–canopy). The results were used as input into the crop growth model PROMET-V to calculate grain yield. Two years of data from the German research project preagro are presented.     

Comparison of different laboratory methods with lysimetry for soil solution composition — experimental and model results

Compositions of soil solution obtained by the following methods were compared with those obtained by lysimetry: centrifugation; 2:1 extracts of air dried (2:1_dried) and field moist (2:1_moist) samples; saturation extracts; the ‘equilibrium soil pore solution’︁ method using columns with undisturbed (ESPS) and composited soil (ESPS_comp); and a method using pressure. Two soil depths of a Spodic Dystric Cambisol at Solling, Germany, were sampled with 10 to 12 replications. A coupled equilibrium model was used to describe the effect of soil to solution ratio on the solution composition. The model included multiple cation exchange and inorganic complexation, and for the subsoil solubility products of AlOHSO₄ and Al(OH)₃. Saturation extracts gave similar results as lysimetry and thus may be useful for calculating output fluxes. However, biological transformations (N mineralisation, solubilisation of organic matter) occurred during the preparation of saturation extracts. Composition of soil solutions obtained by either 2:1_dried extracts or centrifugation differed greatly from the results of other methods, indicating that these two methods may not be the best means to investigate equilibrium soil solutions. The values of molar ion ratios depended largely on the method used to obtain soil solutions: Ca²⁺/Al³⁺ ratios for each depth ranged from less than 0.3 (which suggests that liming is required urgently) to greater than 1 (liming not necessary). Modelling described the effect of soil to solution ratio on element concentrations for the methods pressure, saturation extracts, ESPS_comp and 2:1_moist extracts qualitatively with a few exceptions. The model suggested that differences in element concentrations using these methods may be mainly due to dilution, cation exchange and solubilisation of sparingly soluble salts, depending on the soil to solution ratio used.     

Serial exploitation of global sea cucumber fisheries

In recent decades, invertebrate fisheries have expanded in catch and value worldwide. One increasingly harvested group is sea cucumbers (class Holothuroidea), which are highly valued in Asia and sold as trepang or bêche‐de‐mer. We compiled global landings, economic data, and country‐specific assessment and management reports to synthesize global trends in sea cucumber fisheries, evaluate potential drivers, and test for local and global serial exploitation patterns. Although some sea cucumber fisheries have existed for centuries, catch trends of most individual fisheries followed boom‐and‐bust patterns since the 1950s, declining nearly as quickly as they expanded. New fisheries expanded five to six times faster in 1990 compared to 1960 and at an increasing distance from Asia, encompassing a global fishery by the 1990s. Global sea cucumber production was correlated to the Japanese yen at a leading lag. Regional assessments revealed that population declines from overfishing occurred in 81% of sea cucumber fisheries, average harvested body size declined in 35%, harvesters moved from near‐ to off‐shore regions in 51% and from high‐ to low‐value species in 76%. Thirty‐eight per cent of sea cucumber fisheries remained unregulated, and illegal catches were of concern in half. Our results suggest that development patterns of sea cucumber fisheries are largely predictable, often unsustainable and frequently too rapid for effective management responses. We discuss potential ecosystem and human community consequences and urge for better monitoring and reporting of catch and abundance, proper scientific stock assessment and consideration of international trade regulations to ensure long‐term and sustainable harvesting of sea cucumbers worldwide.     

Mysterious syndrome causing high mortality in wild brown trout in Eastern Switzerland,pathology and search for a possible cause

Since 2016, annually occurring species-specific die-offs of brown trout (Salmo trutta fario) occurred in the Thur River, situated in the Eastern part of Switzerland. These events lead to drastically reduced population densities in the impacted river regions. Clinical signs in brown trout and mortality were restricted to few weeks in August/September. To characterize the syndrome and to find possible causes, from end of March to November 2018, one-year-old brown trout (Salmo trutta fario) and rainbow trout (Oncorhynchus mykiss) were exposed to water from Thur River, fish were sampled regularly and screened for infectious agents, including viral metagenomics, and pathology was described. Starting approximately four months post-exposure, brown trout showed severe lymphohistiocytic pancarditis and necrotizing and haemorrhagic hepatitis. These lesions were recorded until the end of the experiment in November. Rainbow trout were not affected at any point in time. No infectious agents could be identified so far as cause of disease, especially no viral aetiology. Even if pathogenesis and pathology point in the direction of an infectious agent, a causative relationship could not be confirmed and aetiology remains unclear.     

Chemistry of soil organic matter as related to C : N in Norway spruce forest (Picea abies(L.) Karst.) floors and mineral soils

Due to high nitrogen deposition in central Europe, the C : N ratio of litter and the forest floor has narrowed in the past. This may cause changes in the chemical composition of the soil organic matter. Here we investigate the composition of organic matter in Oh and A horizons of 15 Norway spruce soils with a wide range of C : N ratios. Samples are analyzed with solid‐state ¹³C nuclear magnetic resonance (NMR) spectroscopy, along with chemolytic analyses of lignin, polysaccharides, and amino acid‐N. The data are investigated for functional relationships between C, N contents and C : N ratios by structural analysis. With increasing N content, the concentration of lignin decreases in the Oh horizons, but increases in the A horizons. A negative effect of N on lignin degradation is observed in the mineral soil, but not in the humus layer. In the A horizons non‐phenolic aromatic C compounds accumulate, especially at low N values. At high N levels, N is preferentially incorporated into the amino acid fraction and only to a smaller extent into the non‐hydrolyzable N fraction. High total N concentrations are associated with a higher relative contribution of organic matter of microbial origin.     

Manganese in tree rings of Norway spruce as an indicator for soil chemical changes in the past

Element concentrations in tree rings can be used to monitor changes in environmental quality. With regard to the detection of incipient soil acidification, the manganese concentration in soils and plants is a significant marker for the switch of acid buffering in soils mainly with the exchange of base cations or with the dissolution of aluminium oxides. This is a site-specific non-linear event, indicating the onset of Al³⁺ dominance in the soil solution, were damages to vegetation due to acid stress become possible. This turning point is also a marker for the attainment of pH 4.2 in soils, the critical threshold used for critical load calculations. On a plot of the German environmental monitoring in forests the element concentrations in tree rings of 60-year-old spruces reveal a distinct decline in the Mn concentration, beginning in the late 1960s ending in the late 1970s. With this information it was possible to assume a base saturation in the soil of about 15–20% in the late 1960s, and to model the development of the base saturation of the site. A decline from 17.5 to 6% within one decade could be related to the deposition. This is in accordance with the base saturation of 6.5%, measured in 1993 for this site, but also for adjacent spruce sites on the same geological substrate. The knowledge of the time span were this site-specific non-linear event occurred is essential for the reconstruction of the soil chemistry of a site. Moreover, it enables the assignment of observations like ‘forest damages’ to the onset of changes in environmental quality.     

Auswirkungen einer Nachd��ngung im Sommer auf die Frosth?rte von Salix cinerea L. sowie auf ausgew?hlte N?hrstoffe und Biomarker

One year old rooted cuttings were fertilized with Osmocote exact according to 0,8 g N L^{? ? 1} substrate in February 2009. In August half of the plants received the same fertilizer dose while the other half was not refertilized. In autumn 2009 and in spring 2010 early resp. late frost tests were carried out under controlled conditions, furthermore sprouting was evaluated in spring 2010. Frost damage was measured with the electrolyte leakage method. In the early frost test biochemical stress responses like glucose, sucrose and proline were analyzed. In the new shoots N-, P-, and K-concentration were measured. Refertilized plants did not grow more but showed higher N-, P-, and K-concentrations. These plants had more proline in their buds and roots compared to the non-refertilized ones. Sucrose and glucose contents in the roots of refertilized plants were lower than in non-refertilized ones, in the buds there was no difference. Damage due to early frost was independent from refertilization for new shoots and buds but in roots higher for the refertilized plants. In spring 2010 refertilized plants sprouted earlier compared to non-refertilized ones. In buds damage due to late frost slightly increased in refertilized plants while in roots there was no difference between the fertilization treatments.     

Soil organic N - An under-rated player for C sequestration in soils?

The availability of Soil Organic Nitrogen (SON) determines soil fertility and biomass production to a great extent. SON also affects the amounts and turnover rates of the soil organic carbon (SOC) pools. Although there is increasing awareness of the impact of the nitrogen (N) cycle on the carbon (C) cycle, the extent of this interaction and the implications for soil organic matter (SOM) dynamics are still under debate. Therefore, present knowledge about the inter-relationships of the soil cycles of C and N as well as current ideas about SON stabilization are summarized in this paper in order to develop an advanced concept of the role of N on C sequestration. Modeling global C-cycling, it was already recognized that SON and SOC are closely coupled via biomass production and degradation. However, the narrow C/N ratio of mature soil organic matter (SOM) shows further that the impact of SON on the refractory SOM is beyond that of determining the size of the active cycling entities. It affects the quantity of the slow cycling pool and as a major contributor it also determines its chemical composition. Although the chemical nature of SON is still not very well understood, both improved classical wet chemical analyses and modern spectroscopic techniques provide increasing evidence that almost the entire organic N in fire-unaffected soils is bound in peptide-like compounds and to a lesser extent in amino sugars. This clearly points to the conclusion, that such compounds have greater importance for SOM formation than previously assumed. Based on published papers, I suggest that peptides even have a key function in the C-sequestration process. Although the mechanisms involved in their medium and long-term stabilization are far from understood, the immobilization of these biomolecules seems to determine the chemistry and functionality of the slow cycling SOM fraction and even the potential of a soil to act as a C sink. Pyrogenic organic N, which derives mostly from incomplete combustion of plant and litter peptides is another under-rated player in soil organic matter preservation. In fire-prone regions, its formation represents a major N stabilization mechanism, leading to the accumulation of heterocyclic aromatic N, the stability of which is still not elaborated. The concept of peptide-like compounds as a key in SOM-sequestration implies that for an improved evaluation of the potential of soils as C-sinks our research focus as to be directed to a better understanding of their chemistry and of the mechanisms which are responsible for their resistance against biochemical degradation in soils.     

Denitrification from the horticultural peats: effects of pH,nitrogen, carbon,and moisture contents

Denitrification plays an important role in N-cycling. However, information on the rates of denitrification from horticultural growing media is rare in literature. In this study, the effects of pH, N, C, and moisture contents on denitrification were investigated using four moderately decomposed peat types (oligotrophic, mesotrophic, eutrophic, and transitional). Basal and potential denitrification rates (20°C, 18 h) from the unlimed peat samples varied widely from 2.0 to 21.8 and from 118.9 to 306.6 μg (N₂O + N₂)–N L⁻¹ dry peat h⁻¹, respectively, with the highest rates from the eutrophic peat and the lowest from the transitional one. Both basal and potential denitrification rates were substantially increased by 3.6–14- and 1.4–2.3-fold, respectively, when the initial pH (4.3–4.8) was raised to 5.9–6.5 units. Emissions of (N₂O + N₂)–N from oligotrophic, mesotrophic, and transitional peats were markedly increased by the addition of 0.15 g NO₃–N L⁻¹ dry peat but further additions had no effect. Denitrification rates were increased by increasing glucose concentration suggesting that the activity of denitrifiers in all peat types was limited by the low availability of easily decomposable C source. Increasing moisture contents of all peats from 40 to 50% water-filled pore space (WFPS) did not significantly (p > 0.05) increase (N₂O + N₂)–N emissions. However, a positive effect was observed when the moisture contents were increased from 60% to 70% WFPS in the eutrophic peat, from 70% to 80% in the transitional, from 80% to 90% in the oligotrophic and from 70% to 90% in the mesotrophic peat. It can be concluded that liming, N-fertilization, availability of easily decomposable C, and moist condition above 60% WFPS could encourage denitrification from peats although the rates are greatly influenced by the peat-forming environments (eutrophic > mesotrophic > oligotrophic > transitional types).