Genome-wide association studies of preweaning growth and in vivo carcass composition traits in Esme sheep

Sheep are considered as a major contributor of global food security. Moreover, sheep preweaning growth traits as well as in vivo carcass composition traits such as ultrasonic measurements of Longissimus dorsi muscle depth (UMD) and back-fat thickness (UFD) are crucially important indicators of meat yield and hot carcass composition. Despite their relative importance for productivity and profitability of a sheep production system, detected QTL for these traits are quite scarce. Therefore, we implemented GWAS for these traits using animal mixed model-based association approach provided by GenABEL in Esme sheep. Three genome-wide and 14 individual chromosome-wide associated SNPs were discovered. As a result, ESRP1, LOC105613082, ZNF641, DUSP5, TEAD1, SMOX, PTPRT, RALYL, POM121C, PHIP, LOC101106051, ZIM3, PEG3, TRPC7, FBXL4, LOC105610397, LOC105616489 and DNAAF2 were suggested as candidates. Some of the discovered genes and involved pathways were already annotated to contribute growth and development in various species including human, mice and cattle. All in all, the results of this study are expected to strongly contribute to shed a light on the underlying molecular mechanisms behind growth and carcass composition traits, with potential implications on studies aiming faster genetic improvement, targeted low-resolution SNP panel designs and genome-editing studies.     

Design of Neural Network Predictor for the Physical Properties of Almond Nuts

In this study, an adaptive neuro fuzzy interface system (ANFIS) based predictor was designed to predict the physical properties of four almond types. Measurements of the dimensions, length, width and thickness were carried out for one hundred randomly selected samples of each type. With using these three major perpendicular dimensions, some physical parameters such as projected area, arithmetic mean diameter, geometric mean diameter, sphericity, surface area, volume, shape index and aspect ratio were estimated. In in a various Artificial Neural Network (ANN) structures, ANFIS structure which has given the best results was selected. The parameters analytically estimated and those predicted were given in the form of figures. The root mean-squared error (RMSE) was found to be 0.0001 which is quite low. ANFIS approach has given a superior outcome in the prediction of the Physical Properties of Almond Nuts.     

Pharmacokinetics and bioavailability of danofloxacin in chukar partridge (Alectoris chukar) following intravenous,intramuscular, subcutaneous,and oral administrations

The aim of the present study was to determine the pharmacokinetics (PKs) and bioavailability of danofloxacin in chukar partridge (Alectoris chukar) following intravenous (IV), intramuscular (IM), subcutaneous (SC), and oral (PO) administrations at a dose of 10 mg/kg. A total of eight clinically healthy chukar partridges weighing 480 ± 45 g were used for the investigation. The study was performed in a crossover design (2 × 2 × 2 × 2) with a 15‐day washout period between two administrations in four periods. The plasma concentrations of danofloxacin were determined using reversed‐phase high‐performance liquid chromatography. Noncompartmental PK parameters were also estimated. No local or systemic adverse drug effects were observed in any of the chukar partridges. The mean elimination half‐life ranged between 8.18 and 12.08 hr and differed statistically among administration routes. The mean peak plasma concentrations of danofloxacin following IM, SC, and PO administrations were 8.05, 9.58, and 3.39 μg/ml at 0.5, 1, and 4 hr, respectively. Following IM, SC, and PO administrations, the mean bioavailability was 86.33%, 134.40%, and 47.62%, respectively. The mean total clearance and volume of distribution at steady‐state following IV administration were 0.13 L hr^?1 kg^?1 and 0.96 L/kg, respectively. These data, including favorable PKs and the absence of adverse drug effects, suggest that danofloxacin is a useful antibiotic in chukar partridges.     

Gene effects of Cicer reticulatum on qualitative and quantitative traits in the cultivated chickpea

The gene effects of Cicer reticulatum on both double‐podding as qualitative traits and yield criteria as quantitative traits in interspecific hybridization with cultivated chickpea (Cicer arietinum) have not yet been elucidated, despite the easy acquisition of hybrid progeny between two species. This study sought to answer three questions concerning qualitative and quantitative traits in reciprocal crosses between C. arietinum and C. reticulatum. (i) Is there a similarity in the gene effects of flower colour, pigmentation and double‐podded traits in reciprocal interspecific crosses? (ii) What are the expressivity and penetrance of the double‐podded trait in interspecific crosses? (iii) Which heterosis predicts the occurrence and the extent of transgressive variation? The materials for this study were F₁, F₂ and F₃ progeny derived from a reciprocal cross between C. arietinum and C. reticulatum. As qualitative traits, purple flower colour, pigmentation and single‐podded traits in C. reticulatum were governed by a dominant single gene. Purple flower colour and pigmentation were detected to be linked traits as all progeny had the same phenotypes. As quantitative traits, yield criteria in progeny which were double‐podded had higher values than the single‐podded counterparts. Expressivity and penetrance of the double‐podding trait were superior in progeny derived from C. reticulatum × C. arietinum. The results showed that fruitful heterosis was more useful than residual heterosis in F₃ as residual heterosis was mostly negative and fruitful heterosis was suggested in self‐pollinated species such as chickpea that lacks inbreeding depression. Interspecific transgression was significant with respect to chickpea improvement because it represented a potential source of novel genetic variation.     

Use of dispersed flow models in design of biofilm reactors

An attempt has been made to set up a relationship between the removal efficiency and the dispersion characteristics of biological filters. For granular-media trickling filters, effluent concentrations have been calculated with the equation of complete mixing at low flow rates and by means of a dispersed plug-flow model for large hydraulic loadings. For coarse media, the mixed flow zone disappears and the substrate removal is obtained using the equation of dispersed plug flow. The effect of temperature and substrate concentration on the filter efficiency has been investigated using the model developed and the application of this theory to the practical problems has been thus demonstrated.     

Kinetics Characteristics of Biofilm Reactors

A numerical model of biofilm reactors was tested using Monod typebiological kinetics in terms of the properties of feed solutionand dispersion. The model is based on computer techniques andthe numerical evaluation of the normalized biofilm mathematicalmodel. The effect of inlet parameters including concentration,flow rate, mass transfer coefficient and biofilm thickness wereinvestigated using the computer program developed. The numericalmodel was also applied to experimental data to demonstrate itsvalidity. In thin biofilms kinetic coefficients and otherparameters such as molecular diffusivity can be determinedbased upon experimental results. In thick biofilms, however, anadditional kinetic parameter or any other quantity related tomass transfer is a prerequisite in the evaluation ofexperimental data.     

Physical properties of structural soils containing waste materials to achieve urban greening

Purpose

The densification and expansion of urban areas will increase the streams of waste materials such as bricks, concrete and street sweeping waste. In parallel, green areas offer the potential to overcome many challenges that face growing/expanding cities but require the use of large amounts of natural resources such as natural topsoil and aggregates. In this work, various waste materials mixed with organic debris are tested for greening applications in urban environments as an alternative to the consumption of natural resources.

Materials and methods

Five combinations of artefacts were studied either as “growing material” (i.e. dedicated to plant growth) or “structural material” (as support for traffic). These constructed Technosols were studied in situ in lysimeters under two sets of contrasting climatic conditions at two sites in France (Angers, oceanic climate, and Homécourt semi-continental climate). They were planted with trees (Acer platanoides) and with ryegrass (Lolium perenne L.).

Results and discussion

Compared to natural soils, the constructed Technosols exhibited high porosities and highly saturated hydraulic conductivities (up to 0.76 m³ m^?3, and to 34.74 cm h^?1, respectively). The physical properties–i.e. macroporosity and microporosity–of these artificial soils revealed high water supply for plants, with available soil water ranging from 0.5 to 2.9 mm cm^?1. Tree and ryegrass roots were able to grow in the entire soil volume available in the lysimeters. Organic matter nature and soil pH conditions appeared to be the main drivers of plant development.

Conclusions

Constructed Technosols are suitable for vegetation growth and constitute a valuable alternative to the consumption of natural arable earth for urban greening applications, e.g. gardens, parks, and tree lines. Furthermore, they can provide high levels of relevant ecosystem functions in cities such as water retention and infiltration, plant settlement, carbon sequestration and even biodiversity habitats.

     

Surface Modification of Sporopollenin with Calixarene Derivative

In this study, p-tert-butylcalix[4]-aza-crown (CAC) immobilized sporopollenin (Sp) was used as a sorbent for the removal of Cu(II), Pb(II) and Zn(II) from aqueous media. Sporopollenin was firstly functionalized with 3-chloropropyltrimethoxysilane (CPTS) in order to obtain chloro-sporopollenin (Sp-Cl). The Sp-Cl was reacted subsequently with CAC yielding CAC-bonded sporopollenin (Sp-Cl-CAC). The new sorbent was characterized by infrared spectroscopy (FTIR), thermal analysis (TG/DTG) and scanning electron microscopy (SEM). The sorption properties of modified sorbent (Sp-Cl-CAC) are also investigated. The optimum pH values for the separation of metal ions from aqueous solution onto Sp-Cl-CAC were 5.0 for Pb(II) and Cu(II) and 5.5 for Zn(II). The maximum sorption capacities for Cu(II), Pb(II) and Zn(II) were 0.07 (4.44?mg?g^?1), 0.07 (4.58?mg?g^?1) and 0.14 (29.00?mg?g^?1) mmol?g^?1, respectively. Sorption thermodynamic parameters of such as free energy (?G ^o), enthalpy (?H ^o), and entropy (?S ^o) were evaluated.     

Studies on differential response of wheat cultivars to boron toxicity

Experiments were carried out to study the differential responses of different wheat cultivars to boron toxicity in field, greenhouse and growth chamber conditions. In field trials carried out at two locations, both of which are known to contain toxic amounts of water-extractable B, significant correlations were obtained between toxicity symptoms and grain yields. The only durum cultivar included in this group of experiments (Kunduru 1149) was the most sensitive of the 21 cultivars trialed. The most tolerant cultivars were of local origin. Genotype-environment interaction was considerably large. Twenty-nine bread wheat and three durum wheat cultivars were compared in a greenhouse experiment with and without the application of 40 mg L^-1 B. Again, the durums were the most sensitive cultivars. The most tolerant cultivars were either selections from local populations or had at least one parent of local origin. The detrimental effect of B on root dry matter production was much higher than on shoot dry matter (45 and 26%, respectively), but genotypical variation was greater in shoot growth retardation. While this implies the possible role of reduced translocation, high concentrations of B in the shoots of tolerant cultivars (though lower than in the sensitive cultivars) indicated the existence of other contributing mechanisms, such as tissue tolerance. Also, greater genotypical variation in older leaves showed that reduced uptake might be more important than reduced translocation in some cases. Due to the lack of correlation between results from the field and the controlled-environment studies, it was concluded that screenings should be undertaken in both situations as a means of verification. Another conclusion drawn was that symptom scoring for B tolerance was more reliable than measuring plant B concentrations. This revised version was published online in August 2006 with corrections to the Cover Date.