Herpesviruses and immunity: The art of evasion

Herpesviruses have evolved several effective strategies to counter the host immune response. Chief among these is inhibition of the host MHC class I antigen processing and presentation pathway, thereby reducing the presentation of virus-derived epitopes on the surface of the infected cell. This review summarizes the mechanisms used by herpesviruses to achieve this goal, including shut-down of MHC class I molecule synthesis, blockage of proteasome-mediated peptide generation and prevention of TAP-mediated peptide transport. Furthermore, herpesvirus proteins can retain MHC class I molecules in the endoplasmic reticulum, or direct their retrograde translocation from the endoplasmic reticulum or endocytosis from the plasma membrane, with subsequent degradation. The resulting down-regulation of cell surface MHC class I peptide complexes thwarts the ability of cytotoxic T lymphocytes to recognize and eliminate virus-infected cells. The subversion of the natural killer cell response by herpesvirus proteins and microRNAs is also discussed.     

Comparison of Edwardsiella ictaluri isolates from different hosts and geographic origins

The intraspecific variability of E. ictaluri isolates from different origins was investigated. Isolates were recovered from farm‐raised catfish (Ictalurus punctatus) in Mississippi, USA, tilapia (Oreochromis niloticus) cultured in the Western Hemisphere and zebrafish (Danio rerio) propagated in Florida, USA. These isolates were phenotypically homologous and antimicrobial profiles were largely similar. Genetically, isolates possessed differences that could be exploited by repetitive‐sequence‐mediated PCR and gyrB sequence, which identified three distinct E. ictaluri genotypes: one associated with catfish, one from tilapia and a third from zebrafish. Plasmid profiles were also group specific and correlated with rep‐PCR and gyrB sequences. The catfish isolates possessed profiles typical of those described for E. ictaluri isolates; however, plasmids from the zebrafish and tilapia isolates differed in both composition and arrangement. Furthermore, some zebrafish and tilapia isolates were PCR negative for several E. ictaluri virulence factors. Isolates were serologically heterogenous, as serum from a channel catfish exposed to a catfish isolate had reduced antibody activity to tilapia and zebrafish isolates. This work identifies three genetically distinct strains of E. ictaluri from different origins using rep‐PCR, 16S, gyrB and plasmid sequencing, in addition to antimicrobial and serological profiling.     

Evidence of Mycobacterium avium subsp. paratuberculosis infection in Dutch farmed red deer

Paratuberculosis is a chronic disease in ruminants caused by Mycobacterium avium subsp. paratuberculosis (MAP). Most economic losses due to MAP occur in the dairy industry. However, the infection is not restricted to cattle, but also occurs in other ruminants, such as sheep, goat, and deer. Although deer are of minimal economic importance in The Netherlands, they may constitute a source of infection for the dairy industry. This pilot study was conducted to estimate the prevalence of Johne's disease in farmed red deer in The Netherlands. Serum and faecal samples were collected from 140 animals, originating from 8 different farms. Four of the farms had animals that tested positive for Johne's disease. The within-herd MAP seroprevalence varied between 4.8% and 21.2%. In conclusion, this pilot study provides evidence of MAP infection in the Dutch farmed deer population, and thus there might be a risk of MAP transmission between farmed red deer and dairy cattle.     

Spatial econometric analysis of a field-scale site-specific nitrogen fertilizer experiment on wheat (Triticum aestuvum L.) yield and quality

Knowledge of site-specific response may help farmers to tailor their management decisions with the help of precision farming technologies. However, farmers often have only a vague idea of the economic potential for site-specific management of their fields, which is important for investment decisions on precision farming technologies. This study presents an on-farm experimental approach to identify the economic potential of site-specific fertilization strategies at low costs. A strip trial with winter wheat (Triticum aestivum, L.) was established with precision farming technologies. Twelve different nitrogen fertilizer rates split in two applications were applied to 30 plots over a total strip length of 1.5 km. Geo-referenced yield was recorded with the harvester. Furthermore, electrical conductivity of the soil was measured and grain quality was surveyed with hand selected samples. With the help of advanced spatial statistical methods, within-field site-specific response was modeled with sufficient accuracy at comparably low costs. Electrical conductivity of the soil, elevation above sea level, and derivates of a digital elevation model were used as covariates to identify a possible economic potential for site-specific fertilization. Yield and protein response was best predicted with spatially adjusted regression models with site-characteristics or their interaction with management variables. Protein content was essential for achieving best economic results. The economic potential for site-specific fertilization strategies for the analyzed field was below 2 €/ha. However, the approach to identify the potential may be transferred to other locations with greater potential for site-specific farming.     

Root recovery rates for Phytophthora cinnamomi and rate of symptom development from root rot on Abies fraseri trees over 7 years

Phytophthora root rot on Abies fraseri trees was monitored from 2001 to 2007 within the disease front of a 12‐year‐old Virginia plantation where trees had been dying of the disease since 1994. After a slow increase in early foliage symptom development from July 2001 to September 2002, the frequency of A. fraseri trees with early symptoms accelerated for about 15 months. While the slow increase occurred during a 18.7% lower than normal rainfall period and the acceleration occurred during a 31.2% higher than normal rainfall period, the percentage of trees with early symptoms continued to increase during the mid‐winter months (December–February) when the estimated mean minimum daily soil temperature (25 cm depth) was unfavourable (<10°C) to Phytophthora cinnamomi pathogenic activity. The time required for trees to progress from early foliage symptoms to completely dead foliage, from November 2000 to October 2007, was highly variable, ranging from 4 to 35 months. Root recovery rates for P. cinnamomi, assayed on a selective medium, were 6.4 times greater for symptomatic foliage trees than for asymptomatic foliage trees in this deep, silt‐loam soil. Following an atypical cold period in February 2007, when the mean minimum daily soil temperature was 0.8°C, symptomatic roots yielded only a low level of germinable propagules of P. cinnamomi. Further, during an atypical midsummer in 2007 (June–August), when the soil water potential was at or below ?9 bars for 68 of 92 days, symptomatic roots yielded no germinable propagules of P. cinnamomi. Addition of thiophanate‐methyl to the selective medium aided P. cinnamomi isolation by inhibiting many undesired pythiaceous colonies growing from symptomatic roots.     

Frequencies and spatial patterns of white hypovirulent and pigmented strains of Cryphonectria parasitica within blight-controlled cankers on grafted American chestnut trees 15–16 years after inoculation

The frequencies and spatial patterns of white and pigmented strains of Cryphonectria parasitica were investigated within cankers in a zone on grafted American chestnut trees inoculated with white (European) and pigmented hypovirulent strains (H-inoculated zone) 15–16 years earlier. Six 7 × 7 lattice plots (each 17.8 × 17.8 cm) were established on cankers in the H-inoculated zone of the grafts. Assays of 49 bark cores per lattice indicated that 35.3% of 306 C. parasitica isolates recovered from the six lattice plots were white. The white isolates had a random pattern, potentially favorable to biocontrol, within the highly superficial cankers, based on join-count statistics of the six lattice plots. Pigmented isolates dominated the C. parasitica population, and virulence trials on American chestnut sprouts indicated 36% of the pigmented isolates from the H-inoculated zone were hypovirulent and 27% were virulent. Most (84.3%) pigmented isolates in a bark core could not be converted to the white phenotype in vitro by white isolates in the same bark core. Five of six lattice plots had a random pattern of pigmented isolates, based on join-count statistics. The sixth lattice plot was composed of an aggregate of 36 lattice cells (area = 232 cm²) containing 12 pigmented vegetative compatability (vc) groups of C. parasitica, which were interwoven in the lattice as a mosaic of thread-like forms, blocks, or ‘islands’ 32 cm² or less in area for each vc group. Hypotheses are advanced to explain why virulent pigmented strains persist in blight-controlled cankers of the H-inoculated zone but do not kill the vascular cambium.     

Quantitative trait locus detection in commercial broiler lines using candidate regions

A QTL that explained a large proportion of the phenotypic difference between broiler and layer chickens in an experimental cross was evaluated in a commercial broiler line. A three-generation design, consisting of 15 grandsires, 608 half-sib hens, and more than 50,000 third-generation offspring, was implemented within the existing breeding scheme of a broiler breeding company. Four markers from a candidate region on chicken chromosome 4 were selected for their informativeness in the grandsires and used to genotype the first two generations. Using half-sib analyses, linkage was studied between these markers and 13 growth and carcass traits. The QTL analyses confirmed the presence of significant QTL for body weight (P < 0.01) and residual feed intake (P < 0.05) on chicken chromosome 4. Furthermore, evidence was found for QTL affecting the relative weight of bone and muscle in the thigh. Four more markers were added to increase resolution of the QTL positions. This increased the significance of the QTL for body weight (P < 0.001) and residual feed intake (P < 0.01) and showed evidence (P < 0.05) for additional QTL affecting carcass weight and conformation score. This study showed for the first time that a QTL that explains differences between broilers and layers was segregating in lines that have been selected for body weight over 50 generations. A possible explanation could be a pleiotropic or closely linked effect on fitness-related traits that are not part of the present study. The results demonstrate the feasibility of QTL detection and the potential for marker-assisted selection within a commercial broiler line without altering the existing breeding scheme.     

Tuberculosis in domesticated red deer: Comparison of purified protein derivative and the specific protein MPB70 for in vitro diagnosis

The use of a Mycobacterium bovis-specific protein, mycobacterial protein bovis 70 (MPB70), was compared with complex, M bovis-derived purified protein derivative (bovine PPD), for its ability to improve the diagnostic precision of in vitro assays for tuberculosis in farmed deer. A combination of lymphocyte transformation and enzyme-linked immunosorbent assay (ELISA) was used to differentiate between specific M bovis reactivity and crossreactivity due to sensitisation with saprophytic mycobacteria such as Mycobacterium avium. In the lymphocyte transformation assay the response of mononuclear cells, from red deer, to MPB70 was found to be more specific, but less sensitive, as an indicator of infection by M bovis when compared with the complex antigen bovine PPD. When used in conjunction with bovine PPD alone, MPB70 was found to increase the specificity of the ELISA in diagnosing animals with disease.