Self-assembly of proteins into designed networks

A C4-symmetric tetrameric aldolase was used to produce a quadratic network consisting of the enzyme as a rigid four-way connector and stiff streptavidin rods as spacers. Each aldolase subunit was furnished with a His6 tag for oriented binding to a planar surface and two tethered biotins for binding streptavidin in an oriented manner. The networks were improved by starting with composite units and also by binding to nickel-nitrilotriacetic acid-lipid monolayers. The mesh was adjustable in 5-nanometer increments. The production of a net with switchable mesh was initiated with the use of a calcium ion-containing beta-helix spacer that denatured on calcium ion depletion.     

Efficient inhibition of the Alzheimer's disease beta-secretase by membrane targeting

beta-Secretase plays a critical role in beta-amyloid formation and thus provides a therapeutic target for Alzheimer's disease. Inhibitor design has usually focused on active-site binding, neglecting the subcellular localization of active enzyme. We have addressed this issue by synthesizing a membrane-anchored version of a beta-secretase transition-state inhibitor by linking it to a sterol moiety. Thus, we targeted the inhibitor to active beta-secretase found in endosomes and also reduced the dimensionality of the inhibitor, increasing its local membrane concentration. This inhibitor reduced enzyme activity much more efficiently than did the free inhibitor in cultured cells and in vivo. In addition to effectively targeting beta-secretase, this strategy could also be used in designing potent drugs against other membrane protein targets.     

Soils of the Main Ethiopian Rift Valley escarpment: A transect study

The mountainous environment of the Ethiopian highlands has a great variety of ecotopes and thus demands great flexibility in land management. Different climatic conditions and landscape positions induce different soil forming processes, leading to various soil types with specific risks and potentials. The present study portrays a soil sequence of the central section of the Main Ethiopian Rift Valley, from the footslopes of the eastern escarpment to the marginal volcano structures. Six profiles under natural vegetation are described for classification according to the USDA Soil Taxonomy and World Reference Base for Soil Resources classification systems, and special site characteristics are discussed. The Acacia savannah of the footslopes (1900 m a. s. l.) is characterized by Vertisols (Mazic Vertisols/Aridic Haplusterts), with often pronounced effects of seasonal waterlogging. All other soils are well-drained and reflect the general increase in rainfall with elevation and slope, causing a decline in topsoil pH and a change from cation-rich clay soils of the Podocarpus-dominated forest at 2300 m a. s. l. (Mollic Nitisols/Typic Palehumults) to strongly-leached Humic Umbrisols/Humic Dystrudepts of the Hagenia-dominated forest around 2600 m a. s. l. The highland savannah plain (2700 m a. s. l.) with a drier and cooler environment has typically Mollic Cambisols/Dystric Haplustepts, which are less leached and have a rather brownish colour. At 2900 m a. s. l., Niti-umbric Alisols/Andic Hapludalfs are found in the Hypericum forest at the midslopes of the marginal volcanoes receiving high rainfall, whereas soil development is at a more initial state in the Erica-dominated forest at 3200 m a. s. l. (Umbric Andosols/Alic Hapludands). Clay mineral composition is kaolinite-dominated for the upper five profiles, with a high proportion of poorly crystalline components in the upper savannah and the volcano upslopes. The lowermost profile probably has a polygenetic origin indicated by an abrupt change from a smectitic to a kaolinitic composition in the subsoil. Soil development on quite homogeneous bedrock appears essentially controlled by relief and climate, underlining the suitability of the region as a model area for in-depth gradient studies on ecosystem processes and land use.     

Particle-size distribution of PAH in the air of a remote Norway spruce forest in northern Bavaria

The aim of the present study was to elucidate thedistribution of particulate polycyclic aromatichydrocarbons (PAH) in the air of a remote Norwayspruce (Picea abies (L.) karst.) stand.The study encompassed a total of twenty differentcongeners. Particles in ambient air were alternativelycollected by two different Berner cascade impactors atthe field site in Northern Bavaria over a 14-weeksperiod from the end of April through to the end ofJuly 1994 and subsequently analyzed for their PAHcontent. The concentrations of total suspendedparticulate matter (TSP) ranged from 9–31 μg m^-3,suggesting that the field site is an area with a lowlevel of airborne particles. There was a negativerelationship of total particle concentrations with theamount of canopy precipitation due to particle washout at precipitation events. The distribution of theparticle masses on the different size fractions witha maximum in the 1-μm range is typical for remoteareas and indicates a medium-range transport. Theaerosol-bound PAH load decreased from spring sampleswith 2–4 ng m^-3 to values <1 ng m^-3 in the summersamples. Concurrently, the proportion of low molecularweight congeners in the total PAH load declined.Frequently, the highest PAH concentrations (referringto the air) were found in the 0.1–3 μm sizeseparates (accumulation mode). The results suggestthat apart from PAH input to the soil with litter, dryand wet deposition of aerosol particles is animportant pathway of PAH contamination of acid forestsoils in the Fichtelgebirge mountain range.     

Effects of different cooking procedures on lipid quality and cholesterol oxidation of farmed salmon fish (Salmo salar)

Salmon fillets were steamed, or pan-fried without oil, with olive oil, with corn oil, or with partially hydrogenated plant oil. The exchange between the salmon and the pan-frying oils was marginal, but it was detectable as slight modifications in the fatty acid pattern and the tocopherol contents according to the oil used. Primary and secondary oxidation products were only slightly increased or remained unchanged, which indicated a slight lipid oxidation effect due to the heating procedures applied. The same was observed for tocopherol levels, which remained almost stable and were not affected by the oxidation process. The sum of cholesterol oxidation products (COPs) increased after the heating processes from 0.9 microg/g in the raw sample to 6.0, 4.0, 4.4, 3.3, and 9.9 microg/g extracted fat in pan-fried without oil, with olive oil, corn oil, partially hydrogenated plant oil, and steamed, respectively. A highly significant correlation was found between the fatty acid pattern and the total amount of COPs (r2 = 0.973, p < 0.001). No change has been determined in the n-3 fatty acids content and in the polyunsaturated/saturated-ratio of the cooked salmon fillets. Moderate pan-frying (6 min total) and steaming (12 min) of salmon did not accelerate lipid oxidation but significantly increased the content of COPs. The highest increase of COPs was found through steaming, mainly due to the longer heat exposure. The used frying oils did not influence the outcome; no significant difference between heat treatment with or without oil has been determined.     

Long‐term effects of cropped vs. fallow and fertilizer amendments on soil organic matter II. Nitrogen

The present study evaluated the effect of fertilizer amendments (organic manure and mineral fertilizers), management practices (fallow and untilled vs. cropped and tilled) on changes of N in bulk soil and N associated with different particle‐size fractions. The long‐term field experiment was conducted since 1962 in Gumpenstein, Austria, on a Dystric Cambisol. The N content of the topsoils changed distinctively during 28 and 38 yr of treatments under both fallow and cropped management practices. Highest increase in total N content was found in animal‐manure (liquid)‐treated plots. The remaining ranking was: animal manure (solid) > cattle slurry > half cattle slurry + straw = PK = NPK. Quite short N‐half‐life values of around 2 yr were found for the cattle‐slurry application, while animal manure exhibited longer N‐half‐lives of around 8 yr. Crop removal of N and mineralization losses in cropped plots obviously were higher than N losses from the bare soil plots lacking a plant cover to keep N in the system. This was confirmed by a consistent shift in the natural ¹⁵N abundances. Comparing the mean N contribution of particle‐size fractions to the total N amounts revealed the following ranking after 28 and 38 yr of different treatments: silt > clay > fine sand > coarse sand, with small exceptions. Particle‐size separates showed more significant responses to changes in the N dynamics of the system due to the various treatments than the bulk soil and can be regarded as the better indicators in this respect.     

Swiss concept of soil protection

The maintenance of soils as a basis for sustaining life is an important subject of Swiss environmental policies. A prominent instrument to achieve this goal is the Ordinance of 1998Relating to Impacts on the Soil (OIS). In 13 articles a guiding framework for the protection of the soil is given. For a better understanding of the legal background, SAEFL has published specific commentaries. They explain the intention of the legislator and thus contribute to a consistent and mutual implementation of the soil regulations in practice. Comments are made on respective articles, on the Swiss concept of soil protection and also on the guide, trigger and cleanup values for hazardous substances in the soil. The commentaries are available in German, French and English languages. The extent of the Commentaries (including OIS and excerpts of the Swiss Federal Law of 1983 Relating to the Protection of the Environment) is 44 pages. Mail-address: sol@huwal.admin.ch     

Starch as an energy source in feed for cod (Gadus morhua): Digestibility and retention

An experiment was set up to determine whether cod, Gadus morhua, could use pre-cooked potato starch as an energy source. Four energy levels (0%, 10%, 20% and 30%) of carbohydrate with a constant fat content were fed for 8 weeks. The digestion capacity for pre-cooked potato starch decreased from 40% to 26% with increasing amount of carbohydrate, the average being 33%. The digestibilities of protein and fat were independent of the starch content in the feed. The protein intake was similar for all groups. Energy intake increased when the level of carbohydrate in the feed increased. Neither growth values nor retention values for protein and fat indicated that carbohydrate was utilized to any significant degree as a source of energy. Plasma glucose increased from 350 mg/l to 800 mg/l as the carbohydrate increased from 0 to 30%, and the average was 530 mg/l. The glycogen deposition in muscle tissue seemed to reach a level of ca. 0.4% of muscle wet weight in all groups. The glycogen deposition in the liver attained a maximum of 3.5% of liver wet weight.     

Climatic variability and other site factor influences on natural regeneration of <Emphasis Type="Italic">Pinus pinaster</Emphasis> Ait. in Mediterranean forests

Background  

How environmental factors affect forest regeneration is relevant for systems that depend partially or fully on natural regeneration.     

Microbial biomass and activity indices after organic substrate addition to a selenium-contaminated soil

High concentrations of Se in soil might have negative effects on microorganisms. For this reason, the effect of organic substrate addition (glucose + maize straw) on Se volatilisation in relation to changes in microbial biomass and activity indices was investigated using an artificially Se-contaminated soil. Microbial biomass N was reduced on average by more than 50% after substrate addition, but adenylate energy charge (AEC) and metabolic quotient qCO₂ were both increased. The Se content decreased by nearly 30% only with the addition of the organic substrate at 25°C. No significant Se loss occurred without substrate at 25°C or with substrate at 5°C. In the two treatments with substrate addition, the substrate-derived CO₂ evolution was about 30% lower with Se addition than without. In contrast, Se had no effect on any of the other soil microbial indices analysed, i.e. microbial biomass C, microbial biomass N, adenosine triphosphate (ATP), AEC, ATP-to-microbial biomass C, and qCO₂.