Emergence and early evolution of fungicide resistance in North American populations of Zymoseptoria tritici

Although fungicide resistance in crop pathogens is a global threat to food production, surprisingly little is known about the evolutionary processes associated with the emergence and spread of fungicide resistance. Early stages in the evolution of fungicide resistance were evaluated using the wheat pathogen Zymoseptoria tritici, taking advantage of an isolate collection spanning 20 years in Oregon, USA, and including two sites with differing intensity of fungicide use. Sequences of the mitochondrial cytb protein conferring single‐mutation resistance to QoI fungicides and the nuclear CYP51 gene implicated in multiple‐mutation resistance to azole fungicides were analysed. Mutations associated with resistance to both fungicides were absent in the 1992 isolates, but frequent in the 2012 collection, with higher frequencies of resistance alleles found at the field site with more intensive fungicide use. Results suggest that the QoI resistance evolved independently in several lineages, and resulted in significant mitochondrial genome bottlenecks. In contrast, the CYP51 gene showed signatures of diversifying selection and intragenic recombination among three phylogenetic clades. The findings support a recent emergence of resistance to the two fungicide classes in Oregon, facilitated by selection for mutations in the associated resistance genes.     

A method to generate soilscapes from soil maps

Digital soil mapping for large areas is challenging if mapping resolution should be as high as possible and sampling should be as sparse as possible. Generally, the more complex the soil associations in a landscape, the more samples are required to systematically cover the entire feature space. Moreover, regions should be modeled separately if the patterns of spatial variation vary on subregion level. A systematic segmentation of a landscape into soilscapes is additionally important for a feasible application of soil‐sensing approaches. In this paper, we introduce a semiautomated approach to segment nominal spatial datasets based on the local spatial frequency distribution of the mapping units. The aim is to provide homogeneous and nonfragmented segments with smoothed boundaries. The methodological framework for the segmentation comprises different spatial and nonspatial techniques and focuses mainly on a moving‐window analysis of the local frequency distribution and a k‐means cluster analysis. Based on an existing soil map (1:50,000), we derived six segments for the Nidda catchment (Central Hesse, Germany), comprising 1600 km². As segmentation is based on a soil map, soilscapes are derived. In terms of the feature space, these soilscapes show a higher homogeneity compared to the entire landscape. Advantages compared to an existing map of landscape units are discussed. Segmenting a landscape as introduced in this study might also be of importance for other disciplines and can be used as a first step in biodiversity analysis or setting up environmental‐monitoring sites.     

Callose in root apices of European chestnut seedlings: a physiological indicator of aluminum stress

We determined if callose formation in 1-cm-long root apices of European chestnut (Castanea sativa Mill.) seedlings is affected by naturally occurring high concentrations of aluminum (Al) under laboratory conditions and by low base saturation (BS) of soils under forest field conditions. Under controlled conditions in the laboratory, seedlings were treated with simulated soil solutions in the presence or absence (control) of Al. One day after exposing seedlings to a simulated soil solution containing 168 microM Al, callose formation in the root apices had increased significantly. After 7 days, callose concentration in root apices was significantly correlated with the concentration of free Al3+ ions recovered in the simulated soil solution and with the concentration of Al in fine roots. At four field sites in southern Switzerland, seedlings were grown for five months in either A-horizon soil with a BS above 17% or in a B-horizon soil with a BS below 5%. Callose concentrations were significantly higher in root apices in the B horizon than in the A horizon. Callose concentrations in root apices were negatively correlated with Ca/Al molar ratio in fine roots. We conclude that callose in the root apices of European chestnut could be a useful physiological parameter for assessing Al toxicity under both laboratory and field conditions.     

15N标记氮在盆栽山毛榉中的分配

温室条件下,向盆栽山毛榉幼苗中施加192g.m·^-2^15N示踪物,研究连续两个生长季沉积氮在森林土壤（含森林地被物）、沥出物、以及地上和地下部分生物量的分配。模拟了四种处理（栽培和非栽培）下的NH4^＋和NO3^-沉积情况,每种处理各自标记为^15N-NH4^＋或者^15N-NO3^-。在整个体系中施加15N的总回收率分别是,盆栽处理的^15N-NH4^＋为67.3%～74.9%,非盆栽处理的^15N-NO3^-为85.3%～88.1%。两种^15N示踪物主要沉积在森林土壤（包括森林地被物）中,其中盆栽处理的森里土壤中^15N-NH4^＋为34.6%～33.7%,^15N-NO3^-为13.1%～9.0%,说明异养微生物有很强的固氮作用。森林土壤微生物对^15N-NH4^＋的固定能力比^15N-NO3^-的固定能力强三倍。^15N-NH4^＋的优先异养利用造成土壤中^15N-NH4^＋的沉积量是植物体保存量的两倍 而土壤中^15N-NO3^-的沉积量却低于植物体的。总之,植被-土壤系统中15N-NH4＋的沉积量比^15N-NO3^-的沉积高了60%,说明了沉积氮的形式在森林生态系统中氮保存中的重要性。     

Potential for simultaneous improvement of grain and biomass yield in Central European winter triticale germplasm

Winter triticale, an abundant biomass source for producing biogas in Central Europe, has been bred until now for increased grain yield but not for early biomass yield. Therefore, our objectives were to assess the feasibility of breeding triticale for simultaneous improvement of early biomass and grain yield as well as to predict the early biomass yield using an index of traits measured at maturity stage. A representative sample of 100 triticale lines was evaluated in Experiment I at four locations in Germany. Traits were measured at two growth stages (early dough and full maturity). Genetic variances were significantly different from zero for all traits. The correlated response for early biomass yield estimated from grain yield (0.53) was high, which points to the efficiency of indirect selection. A multiple regression model was developed to predict early biomass yield. The reliability of the model was confirmed in an independent Experiment II with 49 lines. The calibration model explained 55% of total variation for early biomass yield. This clearly underlines that at least during earlier stages of selection, field testing can be carried out for grain yield and related traits to select potential genotypes with high biomass yield based on the developed regression model.     

An assessment of potential of hybrid poplar for planting in the Virginia Piedmont

Poplar species grow well across the temperate zone, but hybrid varieties have not previously been evaluated for planting in the Virginia Piedmont region. The top 12 clones in height growth and rust resistance from a screening trial involving 98 hybrid poplar varieties of three taxa (Populus deltoides × P. maximowiczii, DxM; P. deltoides × P. nigra, DxN; P. deltoides × P. trichocarpa, DxT) were selected for planting in replicated yield trials at two locations in the Virginia Piedmont. Results through the first four growing seasons showed that the DxM taxon had the most rapid height development. It was, however, the taxon most affected by a late spring frost at the Appomattox-Buckingham State Forest site and by Septoria stem canker at the Reynolds Homestead site. Analysis of variance of clonal and location effects showed highly significant differences among replicates within location and among clones within taxon. Among seven clones within the DxM taxon, pairwise comparison tests of height growth identified two groups: a group of four better clones that were significantly different (p = 0.05) from a second group of three. These early results suggest that multi-selection criteria, including growth, disease and frost resistance, are important when developing hybrid poplar clones for planting in the Piedmont region.     

Population genetic structure of Mycosphaerella graminicola and Quinone Outside Inhibitor (QoI) resistance in the Czech Republic

Damage caused by the wheat pathogen Mycosphaerella graminicola increased rapidly during the last two decades in the Czech Republic. We collected isolates from naturally infected fields in seven wheat-growing locations and analysed these using eight microsatellite markers. All markers were highly polymorphic. We found a high degree of genetic diversity and low clonality within all sampled Czech populations. We identified 158 unique multilocus haplotypes among 184 isolates. Field populations showed weak genetic structure but we detected more differentiation between climatic regions within the Czech Republic. We compared the Czech field populations to populations from the United Kingdom, Germany and Switzerland and found a marked differentiation between Czech populations and Western European populations. We hypothesize that decades of different agricultural practices, including the use of different wheat cultivars, may explain this genetic differentiation. We detected a rapid increase in QoI fungicide resistance during the sampling period from 2005 to 2011, coinciding with the widespread application of this class of fungicides in the Czech Republic. M. graminicola populations in the Czech Republic underwent a rapid adaptive evolution from sensitivity to resistance similar to what was described earlier in Western Europe.     

Feasibility and reliability of a German guideline for farm’s self-monitoring in sows and piglets

The present study’s aim was to test a German guideline for farm’s self-monitoring in sows and piglets for its feasibility as well as its interobserver and test–retest reliability. The study was performed between September 2016 and April 2018 on 13 farrowing farms in Northern Germany. Contrary to the guideline, the testing was not carried out by the farmers themselves but by 2 observers with experience in pigs representing common farmers. For the interobserver reliability study, the observers performed 20 joint farm visits independently assessing the same animals. For the test–retest reliability study, each farm was visited 5 times by 1 observer (day 0, day 3, week 7, month 5, month 10). Farm visit 1 (day 0) was used as reference and compared with the remaining farm visits. The reliability was evaluated using Spearman’s rank correlation coefficient (RS), intraclass correlation coefficient (ICC), and limits of agreement (LoA). As results, the guideline’s feasibility was limited. The indicators’ reliability also presented divergent results: All indicators in piglets revealed acceptable to good interobserver reliability (RS 0.64 to 0.77 ICC 0.33 to 0.48 LoA between the intervals −0.02 to 0.13 and −0.02 to 0.00). Contrarily, interobserver reliability was low for indicators in sows (e.g., claw alterations: RS −0.41 ICC 0.00 LoA −0.97 to 0.68). Overall acceptable test–retest reliability could be assigned to all indicators although no exact agreement existed but only the pursuit of trends is indicated. On the basis of the present results, the guideline in its present form cannot be recommended for farms’ self-monitoring. Given the restricted applicability, it should be reconsidered whether it might not be more appropriate to use scientifically tested and generally accepted animal welfare assessment systems such as the Welfare Quality animal welfare assessment protocols, although their application is also time-consuming.