Nematode community structure as a sensitive indicator of microbial perturbations induced by a genetically modified Pseudomonas fluorescens strain

The effects of seed inoculation with the Pseudomonas fluorescens strains F113lacZY [a genetically marked biocontrol agent producing the anti-fungal agent 2,4-diacetylphloroglucinol (DAPG)] and F113G22 [a genetically modified (GM) derivative strain of F113lacZY incapable of producing DAPG] on associated nematode communities were investigated over 17 days of plant growth. Plant growth measurements and colony forming unit counts (CFU) derived from rhizosphere soil indicated only small and transient perturbations as a result of introductions of the GM bacteria. Total nematode numbers were increased significantly in the rhizosphere of inoculated plants compared with the non-inoculated control treatments. These increases were mainly due to increases in bacterial feeding nematodes. This indicates that inoculation with the GM P. fluorescens strains induced high bacterial growth rates in the rhizosphere of plants inoculated with these strains. No indication of greater root colonisation by fluorescent Pseudomonas spp. could be found using CFU counts on Pseudomonas-selective media. Numbers of fungal feeding nematodes decreased initially, probably as a result of lack of intact hyphae in the soil. However, inoculation with the two different GM P. fluorescens strains resulted in a rapid recovery of fungal feeding nematode populations, whereas in the non-inoculated control populations of fungal feeding nematodes remained small. This result is surprising as one of the strains (F113lacZY) produces the anti-fungal agent DAPG and it would be expected that this agent would result in a decrease in fungal activity.     

Risk management in primary apicultural production. Part 1: bee health and disease prevention and associated best practices

Prompted by FAO/WHO's and the European Commission's recognition that documents on Good Farming Practices (GFPs) and Good Veterinary Practices (GVPs) in apicultural production are hardly available, part 1 of this contribution provides an update of current apicultural production and associated best practices to ensure animal and public health. Major bee health and disease prevention issues and risk management options at the primary production level are summarised with particular reference to the role of the veterinary practitioner/consultant and the official veterinarian in a control function in the safe production of honey.     

Culicoides species associated with sheep in the Netherlands and the effect of a permethrin insecticide

Culicoides spp. act as vectors for a number of viral diseases of animals including bluetongue in sheep. The aims of this study were to determine: (1) which Culicoides spp. are associated with sheep in The Netherlands; (2) the time of the day when they are most active; and (3) the effect of treatment of animals with a permethrin insecticide. Two pairs of sheep were each housed within mosquito tents of either one or two layers of netting and all trapped Culicoides spp. were identified microscopically. For the permethrin insecticide study, one of two pairs of sheep was treated with 3.6% permethrin and all animals were housed in tents of similar design. Of the 6210 midges captured, 54.1% were identified as C. chiopterus and 42.7% as C. obsoletus. C. imicola was not identified. The average insect feeding rate was 35-40% and midge activity was greatest around sunset. Permethrin treatment reduced the number of midges captured by 50% and also resulted in a decrease in the percentage of midges that had fed. The findings provide useful information on the behaviour and distribution of Culicoides spp. that will facilitate the development of appropriate control strategies to minimise the risk of insect-vector borne virus diseases such as bluetongue.     

Whole-genome shotgun assembly and analysis of the genome of Fugu rubripes

The compact genome of Fugu rubripes has been sequenced to over 95% coverage, and more than 80% of the assembly is in multigene-sized scaffolds. In this 365-megabase vertebrate genome, repetitive DNA accounts for less than one-sixth of the sequence, and gene loci occupy about one-third of the genome. As with the human genome, gene loci are not evenly distributed, but are clustered into sparse and dense regions. Some "giant" genes were observed that had average coding sequence sizes but were spread over genomic lengths significantly larger than those of their human orthologs. Although three-quarters of predicted human proteins have a strong match to Fugu, approximately a quarter of the human proteins had highly diverged from or had no pufferfish homologs, highlighting the extent of protein evolution in the 450 million years since teleosts and mammals diverged. Conserved linkages between Fugu and human genes indicate the preservation of chromosomal segments from the common vertebrate ancestor, but with considerable scrambling of gene order.     

Long unfolded linkers facilitate membrane protein import through the nuclear pore complex

Active nuclear import of soluble cargo involves transport factors that shuttle cargo through the nuclear pore complex (NPC) by binding to phenylalanine-glycine (FG) domains. How nuclear membrane proteins cross through the NPC to reach the inner membrane is presently unclear. We found that at least a 120-residue-long intrinsically disordered linker was required for the import of membrane proteins carrying a nuclear localization signal for the transport factor karyopherin-α. We propose an import mechanism for membrane proteins in which an unfolded linker slices through the NPC scaffold to enable binding between the transport factor and the FG domains in the center of the NPC.     

Structural rearrangements that govern flow in colloidal glasses

Structural rearrangements are an essential property of atomic and molecular glasses; they are critical in controlling resistance to flow and are central to the evolution of many properties of glasses, such as their heat capacity and dielectric constant. Despite their importance, these rearrangements cannot directly be visualized in atomic glasses. We used a colloidal glass to obtain direct three-dimensional images of thermally induced structural rearrangements in the presence of an applied shear. We identified localized irreversible shear transformation zones and determined their formation energy and topology. A transformation favored successive ones in its vicinity. Using continuum models, we elucidated the interplay between applied strain and thermal fluctuations that governs the formation of these zones in both colloidal and molecular glasses.     

Vibrio anguillarum as a fish pathogen: virulence factors, diagnosis and prevention

Vibrio anguillarum, also known as Listonella anguillarum, is the causative agent of vibriosis, a deadly haemorrhagic septicaemic disease affecting various marine and fresh/brackish water fish, bivalves and crustaceans. In both aquaculture and larviculture, this disease is responsible for severe economic losses worldwide. Because of its high morbidity and mortality rates, substantial research has been carried out to elucidate the virulence mechanisms of this pathogen and to develop rapid detection techniques and effective disease‐prevention strategies. This review summarizes the current state of knowledge pertaining to V. anguillarum, focusing on pathogenesis, known virulence factors, diagnosis, prevention and treatment.     

Biosocial and bionumerical diversity of variously sized home gardens in Tabasco, Mexico

The evaluation of species and structural diversity of home gardens strongly depends on the methods used. We distinguish the biosocial and the bionumerical method. The first is widely used and takes data of the whole population of trees of home gardens to calculate diversity. The bionumerical method calculates diversity from data of a fixed number of randomly selected trees. We apply both methods to analyze if structural and species diversity varies with home garden size, a theme of considerable conservation interest, and compare results. We inventoried the tree component of a sample of 61 home gardens from rural areas in Tabasco, Mexico, which we assigned to three size categories: small (≤1,000 m²), medium sized (>1,000 and ≤2,000 m²), and large home gardens (>2,000 m²). Average species richness and Shannon diversity indices determined by the biosocial method were significantly different among home garden size classes. Average species richness determined by the bionumerical method did not differ among size classes. Both methods showed highest total observed and estimated species richness in the large home gardens, which contain many unique species. Both methods showed similar overall species composition among size classes and highest structural diversity in large home gardens. We conclude that it is important for conservation to maintain large home gardens in local mosaics, and that the biosocial and bionumerical methods are complementary. The bionumerical method allows straight comparison of population diversity within and among systems, but lacks attention for rare and unique species. The biosocial method evaluates how much diversity families custody.