Genotyping canine distemper virus (CDV) by a hemi-nested multiplex PCR provides a rapid approach for investigation of CDV outbreaks

CDV is a highly contagious viral pathogen causing a lethal systemic disease in dogs and other carnivores. Several lineages or genotypes of CDV exist that are variously distributed throughout several continents. Legal or uncontrolled trading of animals may modify the epidemiology of CDV, introducing novel strains in CDV-na?ve areas or accounting for the resurgence of CDV in areas where vaccine prophylaxis was effective and successful to control the disease. A hemi-nested PCR system was developed to genotype strains of the major CDV lineages, America-1, Europe, Asia-1, Asia-2 and Arctic. The assay was tested using a collection of 27 laboratory and vaccine strains and of 36 field CDV strains. Distinct lineages could be differentiated by specific primers targeted to the H gene. The method could be useful for molecular epidemiological studies of CDV, providing a tool for large-scale studies, and for the diagnosis of vaccine-related disease.     

A century of fishery data documenting the collapse of smooth‐hounds (Mustelus spp.) in the Mediterranean Sea

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Exploring connectivity between spawning and nursery areas of Mullus barbatus (L., 1758) in the Mediterranean through a dispersal model

Connectivity between spawning and nursery areas plays a major role in determining the spatial structure of fish populations and the boundaries of stock units. Here, the potential effects of surface current on a red mullet population in the Central Mediterranean were simulated using a physical oceanographic model. Red mullet larvae were represented as Lagrangian drifters released in known spawning areas of the Strait of Sicily (SoS), which represents one of the most productive demersal fishing‐grounds of the Mediterranean. To consider the effect of inter‐annual variability of oceanographic patterns, numerical simulations were performed for the spawning seasons from 1999 to 2012. The main goal was to explore connectivity between population subunits, in terms of spawning and nursery areas, inhabiting the northern (Sicilian‐Maltese) and southern (African) continental shelves of the SoS. The numerical simulations revealed a certain degree of connectivity between the Sicilian–Maltese and the African sides of the SoS. Connectivity is present in both directions, but it is stronger from the Sicilian–Maltese spawning areas to the African nurseries owing to the marine circulation features of the region. However, because the majority of the larvae are transported to areas unsuitable for settlement or outside the SoS, the dispersal process is characterized by a strong loss of potential settlers born in the spawning areas. These results are in agreement with the low genetic heterogeneity reported for this species in the Mediterranean Sea and support the existence of a metapopulation structure of red mullet in the SoS and the adjacent areas.     

Moderate stocking density does not influence the behavioural and physiological responses of rainbow trout (Oncorhynchus mykiss) in organic aquaculture

Welfare in farmed fish got particular attention during the last decades from both governmental and public sides. In aquaculture context, welfare concerns are mainly related to handling procedures, water quality and stoking densities. In Europe, authorities had to clarify the threshold limits of stocking densities to maintain fish good welfare, including for organics aquaculture through the EC regulation 710/2009. However, effects of stocking density on fish welfare are complex and sometimes contradictory. Moreover, there is a lack of knowledge about the impact of density on fish welfare in organic aquaculture. Thus, the aim of the study is to asses welfare state of rainbow trout (Oncorhynchus mykiss) at two initial stocking densities (low density, LD: 12 kg/m³ and high density, HD: 17 kg/m³) fed using organic feed by combining the monitoring of growth performances, behaviour (swimming activity) and physiological indicators (i.e. cortisol, glucose, lactate, hematocrit, red blood cellule count and lysozyme). At the end of experiment, the stocking density reached 21 kg/m³ and 30 kg/m³ for the LD and HD respectively. Overall, growth performances, swimming activity and level of physiological indicators of stress and welfare were similar between HD and LD over the experiment duration. To conclude, we observed no alteration of fish welfare between the two stocking densities monitored. This study suggests that a final stocking density of 30 kg/m³ can be considered for organic aquaculture of rainbow trout respecting welfare.     

Identification,partial characterization,and use of grey mullet ( Mugil cephalus ) vitellogenins for the development of ELISA and biosensor immunoassays

Vitellogenin (Vtg) has proven to be a sensitive and simple biomarker in determining sex, sexual maturity, and xenoestrogenic effects in fish. Thus, our investigation has been focused on identification, partial characterization, and quantification of grey mullet (Mugil cephalus) Vtg through the use of a variety of biochemical and immunological analytical techniques. Mullet is considered both a promising aquaculture candidate and an important species for improving sediment quality in polyculture systems. In the first part of this work, grey mullet Vtg was purified from plasma of 17β-estradiol (E2)-induced male fish by a one-step chromatographic protocol, and partially characterized. Specific polyclonal antibodies were then raised against the mullet Vtg, and both an indirect ELISA and an optical immunosensor were set up and validated to quantify plasma Vtg. The indirect ELISA and the optical immunosensor assay developed showed linear measuring in the range 56.8–1047.1 ng mL−1 and 70–739 ng mL−1 Vtg concentrations in standard solutions, respectively. The results obtained suggest that the indirect ELISA allows Vtg detection over a wide dynamic range, thus resulting more suitable for rapid and sensitive sample screening. Therefore, we suggest that the direct immunosensor is a promising tool which needs more investigation to improve the sensitivity.     

Influence of latitude on the light availability for intercrops in an agroforestry alley-cropping system

Light competition by trees is often regarded as a major limiting factor for crops in alley-cropping agroforestry. Northern latitude farmers are usually reluctant to adopt agroforestry as they fear that light competition will be fiercer in their conditions. We questioned the light availability for crops in alley-cropping at different latitudes from the tropic circle to the polar circle with a process-based 3D model of alley-cropping agroforestry. Two tree densities and two tree line orientations were considered. The effect of the latitude was evaluated with same-sized trees. The relative irradiance of the crops was computed for the whole year or at specific times of the year when crops need more light. The heterogeneity of crop irradiance across the alley was also computed. Surprisingly, crop relative irradiance of summer crops at high latitudes is high, at odds with farmers’ fears. Best designs were highlighted for improving the crop irradiance: North–South tree lines are recommended at high latitudes and East–West tree lines at low latitudes. At medium latitudes, North–South tree lines should be preferred to achieve an homogeneous irradiance of the crop in the alley. If we assume that trees at northern latitudes grow slower when compared to southern latitudes, then alley-cropping agroforestry is highly advisable even at high latitudes with summer crops.     

Saline water and MSW compost: Effects on yield of maize crop and soil responses

A field experiment was carried out in Southern Italy from 2007 to 2010 adopting a two-year rotation of tomato and maize. In this paper, the results of maize cultivation were reported, with the aim to investigate the effects of different water qualities and fertilizers on yield and soil properties. The following treatments were compared: mineral nitrogen (N) fertilizer and irrigation with fresh water (FWF); mineral N fertilizer and irrigation with saline water (SWF); Municipal Solid Waste (MSW) compost and irrigation with fresh water (FWC); MSW compost and irrigation with saline water (SWC). These treatments were compared with an unfertilized control and irrigation with fresh-water (FW0) and an unfertilized control and irrigation with saline water (SW0). At harvest, yield, grain moisture content, dry matter, grain protein, starch, fat content and soil characteristics were determined. The treatments with compost increased the average grain yield of the 11% compared to mineral fertilizer treatments. Furthermore, the grain yield in SWC increased of the 19% respect to average of SWF and SW0, indicating that MSW compost applied as amendment mitigated the adversely effects of saline water. Compost application significantly increased the Total Organic Carbon (TOC). In particular, the FWC and SWC treatments showed an average increase of the 25% compared to the mean TOC value of FWF and SWF. Moreover, at the end of the experiment, electrical conductivity decreased in SWC treatment respect to the SWF (?21%).