“Aberrant” plants in cauliflower: 2. Aneuploidy and global DNA methylation

Aberrant phenotypes of cauliflower were detected throughout the cultivation period and in any variety type. The rate of these phenotypes in the field has recently increased. We reported previously on the first part of our results which showed that (1) the rate of aberrant plants varied with genotype and cultivation area, (2) the aberrant phenotypes can evolve or reverse to normality during the plant cycle and (3) the capacity to express a variant phenotype can be transmitted to the progeny. An epigenetic hypothesis has been proposed to explain the determinism of the phenomenon. Further investigation on the “aberrant” character focussed on the flow cytometric estimation of ploidy levels and on the parallel observation of meiosis. Only a fraction of aberrant plants did show aneuploidy and various ploïdy levels were found for the same phenotype. Indeed, aneuploidy could not be related to the aberrant phenotype although it could probably be a consequence of the aberration phenomenon. HPLC analysis of global DNA methylation rates showed that DNA hypermethylation occurred in plants which exhibited an evolution of their phenotype during vegetative cycle. The epigenetic origin of aberrant phenotypes in cauliflower is discussed with reference to epigenetic diseases described in human beings.     

Protective Effect of a Non-Bacteriocinogenic Lactococcus piscium CNCM I-4031 Strain Against Listeria monocytogenes in Sterilized Tropical Cooked Peeled Shrimp

The protective activity of a non-bacteriocinogenic Lactococcus piscium CNCM I-4031 strain against Listeria monocytogenes was investigated in tropical cooked peeled shrimp stored at 8°C in modified atmosphere packaging (50% N₂–50% CO₂). When inoculated alone (L. piscium 10⁷ CFU g^?1 and L. monocytogenes 10⁴ CFU g^?1), protective culture and target strain grew very well on shrimp reaching a maximum cell number of 10⁹ CFU g^?1 after 7 and 14 days, respectively. In the presence of L. piscium, growth of L. monocytogenes was totally prevented after 3 days of storage. The count was 3.4 log CFU g^?1 lower than in the control after 10 days and until the end of storage (31 days). Using the Seafood Spoilage and Safety Predictor Software (http://sssp.dtuaqua.dk), it was shown that pH decrease from 6.58 to 5.94 and lactic acid concentration of 89.65 mM measured in the co-inoculated batch did not fully explain the inhibition observed.     

A spatiotemporal study of bacterial community profiles associated with Atlantic bluefin tuna larvae,Thunnus thynnus L., in three Mediterranean hatcheries

During the first 2 years of larval rearing trials with Atlantic bluefin tuna, survival was a challenging issue. As bacterial colonization of the gut has been shown to play a key role for other species, we studied the profiles of the microbiota associated with individual larvae at different stages in three distant hatcheries. The Bacterial Community Profile (BCP) was quantified based on PCR‐DGGE analyses of partial amplicons from 16S rDNA. Considerable individual variability in BCP was observed before onset of feeding, and the BCP did not show regular fluctuation during ontogenesis. Microalgae were added to the rearing tanks in two of the three hatcheries, but it was not possible to distinguish the effect of location from the effect of algal addition on BCP. In one hatchery, the larvae were reared either with algal addition or in mesocosm, but due to high individual variability, no significant difference in BCP was detected between the two groups. It was hypothesized that this variability was caused by differences in health, physiological status and developmental stage of the larvae. A practical conclusion from the study is the need to analyse a considerable number of individuals to reflect statistically significant differences between the microbial communities associated with rearing groups.     

Selection of lactic acid bacteria as candidate probiotics and in vivo test on Artemia nauplii

Lactic acid bacteria (LAB) were isolated from rotifer cultures in a marine hatchery to search for potential probiotics for marine animals. Fifteen strains were first selected among a total of 55, according to antibacterial activity against Vibrio sp. Among eight strains identified as Lactobacillus casei, four were highly adhesive, suggesting some ability for surface colonization. The other strains were identified as Lactobacillus plantarum, Lactobacillus dextrinicus, and Leuconostoc sp. To validate probiotic potential, Artemia were challenged against pathogenic Vibrio alginolyticus, with or without one of six selected LAB strains. The six strains protected Artemia against the pathogen, to some extent on condition that nutrient enrichment was provided. La. casei BR51 and X2 were preferred, as they were efficient even in the absence of nutrient supply. La. casei X2 was finally selected as candidate probiotic, due to the best growth performances of Artemia, with or without the pathogen.     

It’s what’s inside that counts: computer-aided tomography for evaluating the rate and extent of wood consumption by shipworms

Experiments were done to investigate in situ colonization of pine wood blocks by marine wood borers at the mouth of a small mountain river in the foothills of the Eastern Pyrenees. Standardized blocks were recovered after remaining underwater for increasingly long durations, until the available resource was exhausted by the shipworms assemblage that developed. Computer-aided tomography (CT) was used for visualizing and quantifying biogenic structures into the wooden blocks. The biodiversity survey of the wood pieces colonized indicated that up to three species of shipworms shared the resource at the same time. The specific wood consumption rate of Nototeredo norvagica was estimated 185 mm³ ind^?1 day^?1. The quantification of voids created by shipworm crowding indicated that total tunnelling represents, on average, 60% of the initial volume of a wood block, revising upward earlier estimates of wood destruction by 28%. CT analysis provides the quantitative measurements necessary to parameterize individual-based growth models linking wood consumption with the species diversity of shipworm assemblages.     

GIS Coop: networks of silvicultural trials for supporting forest management under changing environment

Key message

The diversity of forest management systems and the contrasted competition level treatments applied make the experimental networks of the GIS Coop, a nationwide testing program in the field of emerging forestry topics within the framework of the ongoing global changes.

Context

To understand the dynamics of forest management systems and build adapted growth models for new forestry practices, long-term experiment networks remain more crucial than ever.

Aims

Two principles are at the basis of the experimental design of the networks of the Scientific Interest Group Cooperative for data on forest tree and stand growth (GIS Coop): contrasted and extreme silvicultural treatments in diverse pedoclimatic contexts.

Methods

Various forest management systems are under study: regular and even-aged stands of Douglas fir, sessile and pedunculate oaks, Maritime and Laricio pines, mixed stands of sessile oak, European silver fir, and Douglas fir combined with other species. Highly contrasted stand density regimes, from open growth to self-thinning, are formalized quantitatively.

Results

One hundred and eighty-five sites representing a total of 1206 plots have been set up in the last 20 years, where trees are measured regularly (every 3 to 10 years). The major outputs of these networks for research and management are the calibration/validation of growth and yield models and the drawing up of forest management guides.

Conclusion

The GIS Coop adapts its networks so that they can contribute to develop growth models that explicitly integrate pedoclimatic factors and thus also contribute to research on the sustainability of ecosystems under environmental and socio-economic changes.

     

The effect of sectioning and ultrasonication on the mesoporosity of poplar tension wood

Increasing interest in understanding tension stress generation in tension wood with fibres having a gelatinous layer (G-layer) has focused attention on the specific role of this layer. To distinguish its contribution from those of other wall layers, the G-layer of wood sections was isolated by ultrasonication. The aim of this study was to assess the effect of sectioning and of the ultrasonic treatment on the mesoporosity of tension wood using nitrogen adsorption–desorption analysis. The results showed that the process of isolating the G-layer using ultrasonication strongly affects its mesoporosity. Most damage was found to occur during sectioning rather than as a result of the 15-min ultrasonic treatment.     

Foraging wireworms are attracted to root-produced volatile aldehydes

Soil-dwelling insects are known to react to chemical cues they encounter in the rhizosphere. Whether wireworms (Coleoptera, Elateridae) use root-emitted volatile organic chemicals to localize their host plant remains, however, poorly understood. Here, we aimed at identifying chemical cues released by barley roots that attract Agriotes sordidus. In a first behavioral experiment, we assessed the ability of wireworms to orient towards live barley roots, using dual-choice olfactometers suitable for belowground insects. Then, we collected the volatile organic compounds (VOC) produced by barley roots using a dynamic head-space sampling approach. VOC were quantified and identified using gas chromatography—mass spectrometry (GC–MS). The odorant blend is composed of four aldehydes, namely hexanal, (E)-hex-2-enal, (E)-non-2-enal, and (E,Z)-nona-2,6-dienal. In a second set of dual-choice bioassays, wireworms were attracted towards a synthetic blend of these four major compounds. However, the synthetic blend was not as attractive as live roots, which is partially explained by the absence of CO₂, commonly known as a strong attractant for soil-dwelling insects. While CO₂ indicates the presence of living material in the vicinity, we hypothesize that additional VOC inform about the plant suitability. A better understanding of these belowground signals would contribute to the development of new integrated control strategies against wireworms.