Leaf blight and defoliation caused by two new pathovars of Xanthomonas axonopodis on Schinus terebinthifolius and Mabea fistulifera

Schinus terebinthifolius and Mabea fistulifera have been used for forest repositioning and urban forestry in Brazil. In October 2012, in a routine inspection at the research nursery of the Forestry Department of the Universidade Federal de Viçosa, in Minas Gerais, Brazil, a mortality of approximately 40% of the seedlings was observed as a result of diseases characterized by leaf blight and intense defoliation, which culminated in the death of the plants. Microscopy observations revealed oozing from the infected tissue and isolations revealed a bacterial aetiology for both diseases. Bacterial cells that formed bright yellow mucoid colonies with round edges were routinely isolated from lesion margins. Inoculation of isolated strains into healthy seedlings reproduced the symptoms observed under natural conditions. Bacterial cells showing the same morphological, biochemical and molecular characteristics as those originally isolated from naturally infected plants were reisolated from inoculated plants. Morphological, physiological and biochemical tests as well as 16S rDNA sequencing and multilocus sequence analysis using four housekeeping genes, dnaK, fyuA, gyrB and rpoD, confirmed the newly isolated strains belong to Xanthomonas axonopodis. Plant cross‐inoculations showed the strains did not belong to any known phylogenetically related pathovar. Pathovars X. axonopodis pv. schini pv. nov. and X. axonopodis pv. mabeae pv. nov. are proposed as the causal agents of bacterial leaf blight on S. terebinthifolius and M. fistulifera, respectively.     

Lethal and sublethal responses of <Emphasis Type="Italic">Sitophilus zeamais</Emphasis> populations to essential oils

The present study aimed to assess the lethal and sublethal responses of five populations of S. zeamais to the essential oils of Ocimum basilicum and Piper hispidinervum, through toxicity, locomotor behavior (flight and walking activities) and physiological (respiration rate and body mass) evaluations. The populations of S. zeamais were obtained from Machado—MG, Paracatu—MG, Piracicaba—SP, Recife—PE and Tunápolis—SC. To estimate the LC₅₀ of each oil for each population, fumigation tests were performed. The population from Recife exhibited the lowest instantaneous rate of increase (ri) as well the lowest consumption of grain mass. However, Piracicaba was considered the susceptibility pattern, presenting the lowest LC₅₀ for both essential oils, no statistical difference was observed among populations or treatments in the flight activity bioassays. The essential oils effect on walking activity and respiration rates varied among populations. The population from Recife presented the highest walked distance and walk speed, with the lowest resting time and number of stops, as well as the lowest respiration rate and body mass. The present study highlights the importance of the study on population responses, as the five populations of S. zeamais exhibited different patterns of toxic and behavioral effects when subjected to the essential oils of P. hispidinervum and O. basilicum.     

The relationship of subsequent racing performance to foreleg flight patterns during racing speed workouts of unraced 2-year-old Thoroughbred racehorses at auctions

Workouts of 980 unraced 2-year-old Thoroughbred racehorses at major U.S. auctions were videotaped using digital high-speed video equipment (ie, slow motion) and studied for signs of extraneous foreleg motion.^a Extraneous foreleg motion included, but was not limited to: 1) hyper rotation of the cannon bone on an axis parallel to the plane of the running surface (ie, moving in sagittal plane; hoof hitting an elbow in extreme cases) and perpendicular to the direction of the racetrack longitudinally; and 2) foreleg flight patterns not symmetrical and/or not parallel to the vector of the forward momentum of the horse's center of gravity (eg, winging, paddling, and/or wobbling at joints). Experienced Thorough bred racehorse industry videographers and gait analysis researchers were trained and used as film reviewers who rated foreleg motion on a scale of 1 to 5, with 1 indicating little or no extraneous motion, 3.5 indicating average extraneous motion (relative to the other unraced 2-year-olds at these auctions and to more than 20,000 similar horses at similar auctions over the past 10 years), and 5 indicating extreme extraneous motion (ie, at least 1 standard deviation or more from the mean). Because these were subjective ratings, only the more extreme rankings were used for comparison purposes in this study—that is, a minority (15.3%) of the overall study population.

A group of 73 horses with “good” foreleg motion had ratings from 1 to 3. A group of 77 horses with “bad” foreleg motion had ratings from 4 to 5. The subsequent North American racing performance of horses with good and bad foreleg motion was compared. Both groups had similar average velocity and similar distribution patterns of the velocities of the workouts, so the differences between the groups that are discussed in this study were not caused by different overall workout velocities.

Extraneous foreleg motion was shown to be related to subsequent racing earnings and the level of racing competition achieved. Horses with good foreleg motion (as defined herein) earned more and had greater stakes-level success than horses with bad foreleg motion. For example, the median earnings per start of horses with good foreleg motion was 83% higher than those of horses with bad foreleg motion, and horses with good foreleg motion were 58% more likely to win a top race (ie, one designated as a “graded” stakes) than horses with bad foreleg motion. However, the “good movers” raced less overall than the “bad movers.”

A secondary finding of this study is that although there is a widely held industry belief that horses with high action or bad foreleg motion are more suited to turf racing, horses with good foreleg motion were more likely than horses with bad foreleg motion to race at least once on turf, and, among horses to race on turf, horses with good foreleg motion were more likely than horses with bad foreleg motion to win and to finish “in the money” (ie, at least third).     

Identification and characterization of polymorphisms within the 5' flanking region, first exon and part of first intron of bovine GH gene

The aim of the present study was to identify and characterize polymorphisms within the 5′ flanking region, first exon and part of first intron of the bovine growth hormone gene among different beef cattle breeds: Nelore (n = 25), Simmental (n = 39), Simbrasil (n = 24), Simmental × Nelore (n = 30), Canchim × Nelore (n = 30) and Angus × Nelore (n = 30). Two DNA fragments (GH1, 464 bp and GH2, 453 bp) were amplified by polymerase chain reaction and then used for polymorphism identification by SSCP. Within the GH1 fragment, five polymorphisms were identified, corresponding to three different alleles: GH1.1, GH1.2 and GH1.3 (GenBank: AY662648 , AY662649 and AY662650 , respectively). These allele sequences were aligned and compared with bovine GH gene nucleotide sequence (GenBank: M57764 and AF118837 ), resulting in the identification of five insertion/deletions (INDELs) and five single nucleotide polymorphisms (SNPs). In the GH2 fragment two alleles were identified, GH2.1 and GH2.2 (GenBank: AY662651 and AY662652 , respectively). The allele sequences were compared with GenBank sequences ( M57764 , AF007750 and AH009106 ) and three INDELs and four SNPs were identified. In conclusion, we were able to identify six new polymorphisms of the bovine GH gene (one INDEL and five SNPs), which can be used as molecular markers in genetic studies.     

Genome-wide scan for runs of homozygosity in the composite Montana Tropical® beef cattle

The aim of this study was to assess the distribution of runs of homozygosity (ROH) and autozygosity islands in the composite Montana Tropical^® beef cattle to explore hotspot regions which could better characterize the different biological types within the composite breed. Montana animals (n = 1,436) were genotyped with the GGP-LD BeadChip (~30,000 markers). ROH was identified in every individual using the plink v1.90 software. Medium and long ROH prevailed in the genome, which accounted for approximately 74% of all ROH detected. On an average, 2.0% of the genome was within ROH, agreeing with the pedigree-based inbreeding coefficient. The Montana cattle with a higher proportion of productive breed types showed the highest number of autozygosity islands (n = 17), followed by those with a higher proportion of breeds adapted to tropical environments (n = 15). Enriched terms (p < .05) associated with the immune and inflammatory response, homeostasis, reproduction, mineral absorption, and lipid metabolism were described within the autozygosity islands. In this regard, over-represented GO terms and KEGG pathways described in this population may play a key role in providing information to explore the genetic and biological mechanisms together with the genomic regions underlying each biological type that favoured their optimal performance ability in tropical and subtropical regions.     

Genome‐wide association study for feedlot average daily gain in Nellore cattle (Bos indicus)

The genome‐wide association study (GWAS) results are presented for average daily gain (ADG) in Nellore cattle. Phenotype of 720 male Bos indicus animals with information of ADG in feedlots and 354 147 single‐nucleotide polymorphisms (SNPs) obtained from a database added by information from Illumina Bovine HD (777 962 SNPs) and Illumina BovineSNP50 (54 609) by imputation were used. After quality control and imputation, 290 620 SNPs remained in the association analysis, using R package Genome‐wide Rapid Association using Mixed Model and Regression method GRAMMAR‐Gamma. A genomic region with six significant SNPs, at Bonferroni‐corrected significance, was found on chromosome 3. The most significant SNP (rs42518459, BTA3: 85849977, p = 9.49 × 10^?8) explained 5.62% of the phenotypic variance and had the allele substitution effect of ?0.269 kg/day. Important genes such as PDE4B, LEPR, CYP2J2 and FGGY are located near this region, which is overlapped by 12 quantitative trait locus (QTLs) described for several production traits. Other regions with markers with suggestive effects were identified in BTA6 and BTA10. This study showed regions with major effects on ADG in Bos indicus in feedlots. This information may be useful to increase the efficiency of selecting this trait and to understand the physiological processes involved in its regulation.     

Alternative contemporary group structure to maximize the use of field records: Application to growth traits of composite beef cattle

The objective of the present study was to define an alternative contemporary group structure that would permit an increase in the number of records to be included in genetic evaluations with minimal bias. For this purpose, using different criteria as goodness of fit measured by percentages of squared bias, correlations between predicted and observed records, residual variances, genetic trends, rank correlations, and a practical situation of genetic evaluation, an animal model with standard contemporary group structure was compared with a model with alternative contemporary group structure including weaning management group (WMG) as an additional uncorrelated random effect for postweaning growth traits of composite beef cattle. The present study showed that the inclusion of WMG as a random effect in the statistical model for postweaning growth traits has only a small impact on animal ranking and a small or no impact on the estimation of genetic parameters and genetic trends. On the other hand, this approach leads to an important increase in the number of records available for the prediction of genetic merit with minimal or even no bias. Therefore, the model proposed here can be recommended to overcome problems related to loss of data of model with standard contemporary group structure.     

A large-scale deforestation experiment: effects of patch area and isolation on Amazon birds

As compared with extensive contiguous areas, small isolated habitat patches lack many species. Some species disappear after isolation; others are rarely found in any small patch, regardless of isolation. We used a 13-year data set of bird captures from a large landscape-manipulation experiment in a Brazilian Amazon forest to model the extinction-colonization dynamics of 55 species and tested basic predictions of island biogeography and metapopulation theory. From our models, we derived two metrics of species vulnerability to changes in isolation and patch area. We found a strong effect of area and a variable effect of isolation on the predicted patch occupancy by birds.