Phylogenetic analysis of porcine rotavirus in Argentina: increasing diversity of G4 strains and evidence of interspecies transmission

Group A rotaviruses are one of the most frequently detected viral agents associated with neonatal diarrhea in piglets. In order to characterize rotavirus (RV) strains circulating in Argentinean swine, four porcine production farms located in Buenos Aires were studied. RV strains genotyped as P[6]G4, P[6]G8 and P[1]G6 were found in piglets under 30 days of age, without diarrhea. Phylogenetic and sequence analysis of the VP7 gene from G4 strains available in databases, reveals five porcine new lineages (III-VII) and three sublineages (VIIa-VIIc). The G4 porcine Argentinean strains were grouped with a porcine RV strain isolated in Brazil and another RV strain isolated from a child with diarrhea in Mexico, constituting an American lineage (VII). On the other hand, porcine G6 and G8 were closely related to RV's circulating in Argentinean cattle and South-American camelids, respectively. The fact that G4 porcine lineages were epidemiologically related to human strains, and G6 and G8 Argentinean porcine strains were found related to bovine and South-American camelids, respectively, suggests that pigs might play a crucial role as reservoir and generator of newly adapted emerging RV strains for human and other species.     

Use of robust multivariate linear mixed models for estimation of genetic parameters for carcass traits in beef cattle

Assumptions of normality of residuals for carcass evaluation may make inferences vulnerable to the presence of outliers, but heavy‐tail densities are viable alternatives to normal distributions and provide robustness against unusual or outlying observations when used to model the densities of residual effects. We compare estimates of genetic parameters by fitting multivariate Normal (MN) or heavy‐tail distributions (multivariate Student's t and multivariate Slash, MSt and MS) for residuals in data of hot carcass weight (HCW), longissimus muscle area (REA) and 12th to 13th rib fat (FAT) traits in beef cattle using 2475 records from 2007 to 2008 from a large commercial operation in Nebraska. Model comparisons using deviance information criteria (DIC) favoured MSt over MS and MN models, respectively. The posterior means (and 95% posterior probability intervals, PPI) of v for the MSt and MS models were 5.89 ± 0.90 (4.35, 7.86) and 2.04 ± 0.18 (1.70, 2.41), respectively. Smaller values of posterior densities of v for MSt and MS models confirm that the assumption of normally distributed residuals is not adequate for the analysis of the data set. Posterior mean (PM) and posterior median (PD) estimates of direct genetic variances were variable with MSt having the highest mean value followed by MS and MN, respectively. Posterior inferences on genetic variance were, however, comparable among the models for FAT. Posterior inference on additive heritabilities for HCW, REA and FAT using MN, MSt and MS models indicated similar and moderate heritability comparable with the literature. Posterior means of genetic correlations for carcass traits were variable but positive except for between REA and FAT, which showed an antagonistic relationship. We have demonstrated that genetic evaluation and selection strategies will be sensitive to the assumed model for residuals.     

Response of mycorrhizal, rhizosphere and soil basal respiration to temperature and photosynthesis in a barley field

The mycorrhizal, rhizosphere and basal components of soil respiration were partitioned in a barley field experiment with the main objective of determining the controlling effects of photosynthetic activity and temperature on soil respiration sources. Micro-pore meshes were used to create both root and mycorrhiza-free soil cores over which collars for soil respiration measurements were inserted. Differences between mesh treatments were used to determine the contribution of each component. With a focus on the growing season, we analyzed the response of respiration sources to photosynthesis, temperature and moisture, as well as changes in microbial biomass, mineral nitrogen and carbon-nitrogen ratios responding to treatment and time of year. Results gave clear differences between sources in their response to both temperature and photosynthetic activity and showed that several processes are involved in determining respiration rates as well as apparent temperature relations. In particular, the respiration of arbuscular mycorrhizal hyphae was seen to be a significant amount of root derived carbon respiration (25.3%) and consequently of total assimilated carbon (4.8%). This source showed a stronger response to photosynthetic activity than the rhizosphere component (r²=0.79, p<0.001 and r²=0.324, p=0.53, respectively). Q₁₀ values—the increase in respiration rates with a 10 °C increase in temperature—changed seasonally and showed temperature relations being dependent on the presence of mycorrhizal and rhizosphere respiration sources, as well as on plant development. Respiration from mycorrhizal hyphae and the rhizosphere showed no response (r²=0, p<0.99) or low response (r²=0.14, p<0.01) to temperature, respectively. We conclude that the potential importance and controls of mycorrhizal fungi respiration in croplands are comparable to those observed in other ecosystems, and that temperature response curves should be carefully interpreted given that substrate availability and plant dynamics strongly regulate respiration rates in ecosystems.     

Evaluation of Modified Amaranth Starch as Shell Material for Encapsulation of Probiotics

The objective of this study was to develop with thermoplastic extrusion amaranth starch derivatives and to characterize and evaluate their functionality as encapsulating agents of Bifidobacterium breve ATCC 15700 and Lactobacillus casei ATCC 334 during spray drying. The survival of both probiotics during storage at different water activities and at two storage temperatures, their viability in a food model system, and their tolerance to a simulated gastrointestinal tract were determined. Native amaranth starch was chemically modified to obtain phosphorylated, acetylated, and succinylated starch. Starch derivatives were reduced in viscosity, and the solubility in water was increased. In general, the modified amaranth starches and control corn starch did not provide good protection to both probiotics during storage at 25°C. However, there was excellent viability during storage at 4°C for both probiotics. Microcapsules showed a uniform coverage of the cells. Storage for 35 days at 25°C of blends of oat with succinylated amaranth microcapsules with probiotics had a lower reduction. Also, this succinylated amaranth starch containing probiotics showed a higher resistance to simulated gastrointestinal conditions. The results with food model systems supported the applicability of the modified starches.     

Antioxidant, antiproliferative, and pro-apoptotic capacities of pentacyclic triterpenes found in the skin of olives on MCF-7 human breast cancer cells and their effects on DNA damage

This research aimed to investigate erythrodiol, uvaol, oleanolic acid, and maslinic acid scavenging capacities and their effects on cytotoxicity, cell proliferation, cell cycle, apoptosis, reactive oxygen species (ROS) level, and oxidative DNA damage on human MCF-7 breast cancer cell line. The results showed that erythrodiol, uvaol, and oleanolic acid have a significant cytotoxic effect and inhibit proliferation in a dose- and time-dependent manner. At 100 μM, erythrodiol growth inhibition occurred through apoptosis, with the observation of important ROS production and DNA damage, whereas uvaol and oleanolic acid growth inhibition involved cell cycle arrest. Moreover, although all tested triterpenes did not show free radical scavenging activity using ABTS and DPPH assays, they protected against oxidative DNA damage at the concentration 10 μM. Uvaol and oleanolic and maslinic acids, tested at 10 and 100 μM, also reduced intracellular ROS level and prevented H(2)O(2)-induced oxidative injury. Overall, the results suggest that tested triterpenes may have the potential to provide significant natural defense against human breast cancer.     

Validation of a methodology for grouping intakes of pressurized irrigation networks into sectors to minimize energy consumption

A methodology to optimise the amount of energy consumed in pressurized irrigation systems was presented by Jimenez-Bello et al. (2010a). These authors proposed grouping pressurized irrigation network intakes, each of the water turnouts resulting from a shared hydrant, into sectors via a genetic algorithm. In the present research, the methodology was applied and validated in a water users association. Several energy efficiency indicators were calculated and compared during five consecutive seasons (2006–2010). The first two seasons, when the methodology was not employed, were used as reference for the results obtained from 2008 onwards, when the methodology was applied to the management of irrigation network. Results obtained in seasons 2008–2010 showed that the average energy savings were 16% in comparisons to the 2006 season. However, it should be noted that the potential, theoretical savings, could have been as high as 22.3% if the modelled grouping networks would have been accurately followed. There was in fact some discrepancy between the theoretical model outputs and the final groupings due to some intake restrictions. In addition, during the irrigation campaigns, the number of irrigation intakes that operated within each sector was not always equal to the modelled sectoring, a fact that reduced the overall water users association energy efficiency. This occurred particularly during rainy periods, when some users deliberately decided to close their manual irrigation intakes valves. Overall, results showed the potential of the validated methodology for optimising energy use. However, the final overall system efficiency might depend on specific constraints that need to be taken into account when attempting to use model output predictions.     

Anatomy and cell wall polysaccharides of almond (Prunus dulcis D. A. Webb) seeds

The anatomy of Prunus dulcis was analyzed by applying several differential staining techniques and light microscopy. Prunus dulcis seed has a thin and structurally complex seed coat, with lignified cellulosic tissue. The embryo has two voluminous cotyledons. Cotyledon cells have a high number of protein and lipid bodies, some of which have phytin. The provascular tissue, located in the cotyledons, is oriented in small bundles perpendicular to the transverse embryonic axis. Prunus dulcis cell wall material is very rich in arabinose (45 mol %). Glucose (23%), uronic acids (12%), and xylose (12%) are also major sugar components. The polymers obtained from the imidazole and Na(2)CO(3) extracts contain mainly pectic substances rich in arabinose, but the sugar content of these extracts was very low. The majority of the pectic substances (also rich in arabinose) was recovered with the KOH extracts. These extracts, with high sugar content, yielded also xyloglucans and acidic xylans. The 4 M KOH + H(3)BO(3) extracts yielded polysaccharides rich in uronic acids and xylose and very rich in arabinose, accounting for 27% of the cell wall material.     

Volatile composition of coffee berries at different stages of ripeness and their possible attraction to the coffee berry borer Hypothenemus hampei (Coleoptera: Curculionidae)

The analysis of volatile emissions of coffee berries in different physiological states of ripeness was performed using dynamic headspace and gas chromatography/mass spectrometry analysis for Coffea arabica, var. Colombia. The composition of the volatiles emitted by coffee berries is dominated by very high levels of alcohols, mainly ethanol, in all stages of ripeness in comparison with other compounds. Overripe coffee berries have high volatile emissions and show a composition dominated mainly by esters followed by alcohols, ketones, and aldehydes. The lowest level compounds were monoterpenes. 2-Methyl furan was detected in various ripening stages; this compound has not been previously reported as a coffee berry volatile. The presence of ethanol and other alcohols in the volatile composition might explain the effectiveness of using traps with mixed alcohols for detection and capture of coffee berry borers.