Integrating Patch and Boundary Dynamics to Understand and Predict Biotic Transitions at Multiple Scales

Human modification of landscapes overlying natural environmental heterogeneity is resulting in an increase in the numbers and types of ecological patches and their intervening boundaries. In this paper, we describe an operational framework for understanding and predicting dynamics of these biotic transitions for a range of environmental conditions across multiple spatial scales. We define biotic transitions as the boundary and the neighboring states, a more general definition than typically denoted by the terms boundary, ecotone, edge or gradient. We use concepts of patch dynamics to understand the structural properties of biotic transitions and to predict changes in boundaries through time and across space. We develop testable hypotheses, and illustrate the utility of our approach with examples from arid and semiarid ecosystems. Our framework provides new insights and predictions as to how landscapes may respond to future changes in climate and other environmental drivers.     

Effects of phenoxyethanol on the innate immune system of gilthead seabream (Sparus aurata L.) exposed to crowding stress

Phenoxyethanol is routinely used in seabream aquaculture to minimise fish stress response despite the secondary negative effects which have been observed. In this study, two different doses (60 and 200 microl/l) of phenoxyethanol, sedative and narcotic, were tested for their ability to reduce the stress caused in gilthead seabream (Sparus aurata L.) by crowding. Blood glucose and serum cortisol concentrations were measured as stress indicators. In order to study the effects of the treatment on the innate immune system of crowded specimens, two parameters of the innate immune response, serum complement activity and phagocytosis, were assessed. The results show that anaesthesia itself produced a stress response in the fish and affected the immune system, although the effects were greater with the narcotic dose. When the effects of anaesthesia on crowded fish were analysed, the results pointed to a slight reduction in stress as a result of the sedative dose of phenoxyethanol (lower increase in cortisol and lower reduction in phagocytosis). However, additive negative effects were seen in crowded fish when the narcotic dose of phenoxyethanol was used. Since the use of phenoxyethanol is a common practice in aquaculture, the significance of the results should be considered.     

Improved pulsed-field gel electrophoresis procedure for the analysis of Flavobacterium columnare isolates previously affected by DNA degradation

Flavobacterium columnare is a fresh water bacterium that causes columnaris diseases in over 36 fish species. Intra-species typing of F. columnare can be performed by pulsed-field gel electrophoresis (PFGE). However, this method is hampered by the degradation of chromosomal DNA in about 10% of strains. In the current study, DNA degradation problems caused by extracellular DNases were overcome by fixation of cells with formaldehyde prior to isolation. The results substantiate that after problems due to DNases are overcome, PFGE analysis is a reproducible highly discriminating epidemiological method for studying F. columnare isolates regardless of fish host.     

Effects of Thinning and Induced Drought on Microbiological Soil Properties and Plant Species Diversity at Dry and Semiarid Locations

Soil properties and plant species diversity are key elements of forest ecosystem functioning and are affected directly by climate change. The aim of this work was to study plant species diversity, physicochemical and soil microbiological properties and enzymatic activities after induced drought conditions and thinning at semiarid (Calasparra) and dry (Yeste) Pinus halepensis Mill. forest stands. Different plots affected by a wildfire event 17 years ago, with or without thinning 5 years after the fire event, were selected. A 15% rainfall reduction over 3 years was also carried out. Physicochemical soil properties (soil texture, pH, carbonates, total organic carbon, electrical conductivity and total N and P), soil enzymes (urease, phosphatase, β‐glucosidase and dehydrogenase activities), carbon mineralisation and soil microbial biomass carbon were analysed in the selected study areas. Shannon and Simpson indices were calculated, and total plant cover and plant species richness were evaluated. The results showed no differences in microbiological soil properties and soil enzyme activities when comparing thinned and unthinned plots; conversely, plant species diversity indices were affected by thinning. Induced drought affected only total cover and species richness, which were lower at Yeste. Significant site variation was also observed in soil properties, species richness and total plant cover, as opposed to the plant species diversity indices. We conclude that soil properties recover in the midterm after thinning activities, and they resist against a 15% rainfall reduction under potential climate change conditions remaining steady after induced drought. The plant community presents different responses to drought depending on the experimental site. Copyright © 2014 John Wiley & Sons, Ltd.     

QTL analysis and mapping of pre-harvest sprouting resistance in Sorghum

One of the most important agronomic problems in the production of sorghum [Sorghum bicolor (L.) Moench] in humid climates is pre-harvest sprouting (PHS). A molecular linkage map was developed using 112molecular markers in an F₂ mapping population derived from a cross between IS 9530 (high resistance to PHS) and Redland B2 (susceptible to PHS). Two year phenotypic data was obtained. By means of interval mapping analysis, two significant QTL were detected in two different linkage groups with LOD scores of 8.77and 4.39. Each of these two QTL individually explained approximately 53% of the phenotypic variance, but together, in a two-QTL model, they explained 83% of the phenotypic variance with a LOD score of 12.37.These results were corroborated by a one-way ANOVA in which the four flanking markers of the most likely QTL positions displayed highly significant values in theF-test, and significant variation in trait expression was associated with marker genotypic classes. The four markers with highest effect in the one-way ANOVA were also detected in the second year replication of the F₂ population, and significant genotype × environment interactions was observed. The putative relationship between PHS resistance in sorghum and the maize Vp1 gene is also discussed. This revised version was published online in July 2006 with corrections to the Cover Date.     

Innate humoral immune parameters in Tilapia zillii under acute stress by low temperature and crowding

Redbelly tilapia (Tilapia zillii; Gervais, 1848) is one of the most valuable freshwater species in North Africa representing an important part of the continental production, especially in brackish lakes. In Algeria, T. zillii is distributed in several lakes and tributaries of some rivers in the south. Though some attempts are in progress to culture this species, many investigations covering its biology and farm management are still needed. In this sense, this is the first study attempting to evaluate some of the T. zillii immune parameters and valuable data to assess their health and well-being status. Thus, we have determined the levels of serum peroxidases as well as the alternative complement, antiprotease and bactericidal activities. Furthermore, we have also evaluated the potential impact of two acute stress factors, commonly found in fish farms, in these parameters. Although it was assessed that fish exposed to low temperatures or crowding were stressed, as indicated by their increased serum levels of cortisol and glucose, both acute stressors failed to significantly affect serum peroxidases as well as antiprotease and complement activities. However, the bactericidal activity was reduced in general but only in those exposed to crowding reached statistical significance. Further studies are needed to characterise the immune response in T. zillii as well as the effects that farming stresses may produce.