The versatile,changing, and advancing roles of fish in sediment toxicity assessment—a review

Purpose  

Sediments serve as integral and dynamic parts of our aquatic systems. Within the last 15 to 20 years, however, the scientific community has begun noticing deterioration of sediment quality at an alarming rate worldwide. Sediments are now harboring hazardous pollutants that can directly influence water quality, thereby creating very stressful conditions for aquatic life. As a consequence, global efforts were initiated in the early 1970s, to find ways to assess sediment quality. Because of their obvious ecological and economic significance, fish have remained a major taxonomic group for appraising the general quality of aquatic systems. However, for sediment risk assessment, fish have lagged behind invertebrates due to their mobility and generally, pelagic lifestyle. To our knowledge, this is the first paper that comprehensively presents and reviews the versatile role of fish in assessing the state of health of aquatic sediments.     

Boric acid as alternative reference substance for earthworm field tests

Purpose  

Boric acid was applied in an earthworm field test according to ISO 11268-3 as a possible alternative for the currently used reference substances that may no longer be available in the near future.     

Methanotroph abundance not affected by applications of animal urine and a nitrification inhibitor,dicyandiamide, in six grazed grassland soils

Purpose  

Methanotrophs are an important group of methane (CH₄)-oxidizing bacteria in the soil, which act as a major sink for the greenhouse gas, CH₄. In grazed grassland, one of the ecologically most sensitive areas is the animal urine patch soil, which is a major source of both nitrate (NO₃ ⁻) leaching and nitrous oxide (N₂O) emissions. Nitrification inhibitors, such as dicyandiamide (DCD), have been used to mitigate NO₃ ⁻ leaching and N₂O emissions in grazed pastures. However, it is not clear if the high nitrogen loading rate in the animal urine patch soil and the use of nitrification inhibitors would have an impact on the abundance of methanotrophs in grazed grassland soils. The purpose of this study was to determine the effect of animal urine and DCD on methanotroph abundance in grazed grassland soils.     

Carbon and nitrogen storage in plant and soil as related to nitrogen and water amendment in a temperate steppe of northern China

We conducted a field-manipulated experiment to assess whether changes in precipitation and nitrogen (N) deposition alter ecosystem carbon (C) and N storage. Both C and N pools of plant and soil were monitored when urea-N (17.5 g N m⁻²) and water (increasing mean annual precipitation by 50%) were added to a temperate steppe. After 2 years of treatments, both N and water addition significantly increased soil inorganic N availability by 125% and 62% during the growing season. While water addition significantly increased ecosystem C storage by 6% and N storage by 8%, N addition showed significant effects on neither of them. There were no interactions between N and water addition to affect both total C and N storage in this ecosystem, though they did interact to affect several individual pools (e.g., aboveground biomass N pool, litter C, and N pool). Results from the present study indicate that water availability is more important than N availability for C sequestration and that increasing precipitation will favor C sequestration in this semi-arid grassland.     

Estimating Distance Sampling Detection Functions When Distances Are Measured With Errors

Distance sampling methods assume that distances are known but in practice there are often errors in measuring them. These can have substantial impact on the bias and precision of distance sampling estimators. In this paper we develop methods that accommodate both systematic and stochastic measurement errors. We use the methods to estimate detection probability in two surveys with substantial measurement error. The first is a shipboard line transect survey in the North Sea in which information on measurement error comes from photographically measured distances to a subset of detections. The second is an aerial cue-counting survey off Iceland in which information on measurement error comes from pairs of independently estimated distances to a subset of detections. Different methods are required for measurement error estimation in the two cases. We investigate by simulation the properties of the new estimators and compare them to conventional estimators. They are found to perform better than conventional estimators in the presence of measurement error, more so in the case of cue-counting and point transect estimators than line transect estimators. An appendix on the asymptotic distributions of conditional and full likelihood estimators is available online.     

Freely dissolved PCDD/F concentrations in the Frierfjord,Norway: comparing equilibrium passive sampling with “active” water sampling

Introduction  

Equilibrium passive samplers consisting of 55-μm polyoxymethylene (POM) and 170-μm polydimethylsiloxane were tested for the analysis of polychlorinated dibenzodioxin/furan (PCDD/F) in the pore water and overlying water of the Frierfjord, a bay in southern Norway. This fjord is heavily polluted with PCDD/Fs due to emissions from a former Mg smelter.     

Genetic diversity and relationships between wild and cultivated olives (<Emphasis Type="Italic">Olea europaea</Emphasis> L.) in Sardinia as assessed by SSR markers

The genetic relationships within and between wild and cultivated olives were examined and clarified in an isolated and restricted area, such as the Mediterranean island of Sardinia. Wild (21 individuals) and cultivated olive trees (22 local cultivars from a germplasm collection and 35 ancient trees) were genotyped by means of 13 SSR loci. Five cases of synonymy were observed and nine distinct genotypes were identified in the collection. Five novel genotypes were also detected among the ancient trees. Differences on the allelic composition and heterozygosity levels were found between wild and cultivated trees. Model-based clustering method classified the olive trees into two major gene pools: (a) wild genotypes and (b) local cultivars from the collection and from heritage olives. Regarding the cultivated plant material, we observed that: (a) most of the Sardinian cultivars shared the same allelic profiles with the ancient cultivated trees and (b) the majority of these cultivars and all the novel genotypes were not related to any other cultivars included in this study. These findings as well as the detection of unique alleles and a certain wild genetic background at some cultivars revealed by the Bayesian analysis may indicate their autochthonous origin. The synonymy cases found between local cultivars and Italian mainland cultivars indicate interchange of genetic material among these growing areas, suggesting thus a possible allochthonous origin. The information obtained can assist in the management of an olive collection and sheds some light on the survival of true oleasters and the origin of Sardinian cultivars.     

Genetic variation among highly endangered <Emphasis Type="Italic">Bacopa monnieri</Emphasis> (L.) Pennell from Southern India as detected using RAPD analysis

Randomly amplified polymorphic DNA (RAPD) fingerprinting approach was applied to assess genetic diversity in different accessions of rejuvenating and intellect-promoting ancient ayurvedic medicinal herb Bacopa monnieri (L.) Pennell collected from four Southern Indian states, along with in vitro micropropagated samples maintained in the laboratory for 5 years. With the 10 analyzed primers, 110 distinct bands, in the size range of 250–870 bp were observed, and among which 14 (12.72%) were polymorphic. Among the random primers used, only OPD 02 generated highest percentage of polymorphism with 30.77. Whereas OPD 08 generated a maximum of 18 amplified bands, but with only 1% polymorphism. Cluster analysis done on the basis of similarity co-efficient generated from RAPD profiles indicated all the accessions were divided into two sub-groups based on genetic distances under one major cluster. Major cluster is only the lone loose group of the Bm.2 collected from Kerala (KER) and in vitro micropropagated plant (IVMP) maintained in the lab. The other sub-group consisted of Bm.1 and Bm.3 collected from Tamil Nadu (TN) and Andhra Pradesh (AP) respectively, which are genetically similar and showed similarity with accessions from Karnataka Bm.4 (KK). These two sub-groups were joined together at 0.66 genetic distance level. Overall, the levels of genetic similarity within the accessions varied from 0.24 to 0.80, the matrix ranged from 0.36 to 0.80, with a mean value of 0.68 indicating genetic similarity at low level.     

Comparison of phosphorus fractions and alkaline phosphatase activity in sludge,soils, and sediments

Purpose  

The land application or disposal of sewage sludge generally leads to phosphorus (P) loss in aquatic environments and often results in eutrophication. The nature of P fractions plays a key role in the transport of P within the environment, and alkaline phosphatase is important for the transformation of the P fractions. The objective of this study was to assess the P fractions and alkaline phosphatase activity in sewage sludge, soils, and sediments, in order to effectively evaluate their P bioavailability and mobility.