A RAPD-derived STS marker is linked to a bacterial wilt (Burkholderia caryophylli) resistance gene in carnation

Bacterial wilt caused by Burkholderia caryophylli is one of the most important and damaging diseases of carnations (Dianthus caryophyllus) in Japan. We aimed to identify random amplified polymorphic DNA (RAPD) markers associated with the genes controlling bacterial wilt resistance in a resistance-segregating population of 134 progeny plants derived from a cross between Carnation Nou No. 1 (a carnation breeding line resistant to bacterial wilt) and Pretty Favvare (a susceptible cultivar). We screened a total of 505 primers to obtain RAPD markers useful for selecting resistant carnation lines: 8 RAPD markers identified by bulked segregant analysis were linked to a major resistance gene; of these, WG44-1050 had the greatest effect on resistance to bacterial wilt. A locus with large effect on bacterial resistance was mapped around WG44-1050 through QTL analysis. The RAPD marker WG44-1050 was successfully converted to a sequence-tagged site (STS) marker suitable for marker-assisted selection (MAS). Five combinations of primers were designed for specific amplification of WG44-1050. In addition, the STS marker we developed was useful and reliable as a selection marker for breeding for resistance to bacterial wilt, using a highly resistant wild species, D. capitatus ssp. andrzejowskianus and a resistant line, Carnation Nou No. 1, as breeding materials.     

Spleen-Specific Development of Germinal Centers in Rats Treated with Antithyroid Drugs

The antithyroid drugs (ATDs) methimazole (MMI) and propylthiouracil (PTU) have been used for treatment of hyperthyroidism for more than several decades, despite the fact that they are associated with adverse drug reactions that are thought to be autoimmune mediated. We therefore examined histopathologic responses in the immune system in male and female rats given MMI (2, 20 and 200 mg/kg/day, p.o., in experiment 1; 200 mg/kg/day, p.o., in experiment 3) or PTU (25 and 250 mg/kg/day, p.o., in experiment 2; 200 mg/kg/day, p.o., in experiment 3) for two weeks. In experiments 1 and 2, highest doses of MMI and PTU induced histopathologic changes in the spleen consistent with those in experiment 3 without any changes in the other peripheral lymphoid organs and tissues. In experiment 3, histopathological evaluation of the spleen along with hematological and bone marrow examinations were performed. In both male and female rats, MMI or PTU induced histopathological changes in the spleen characterized by development of germinal centers and an increase in the number of IgG-positive plasma cells in the red pulp; these changes were most prevalent in the MMI-treated female rats. Total red and white blood cell counts were decreased in the MMI-treated male and female rats; lymphocytes and monocytes were lower in male and female rats, respectively. Bone marrow nucleated cells were significantly lower in the MMI-treated males. This is the first study to demonstrate that ATDs induce spleen specific B-cell reactions in rats     

Chromospheric anemone jets as evidence of ubiquitous reconnection

The heating of the solar chromosphere and corona is a long-standing puzzle in solar physics. Hinode observations show the ubiquitous presence of chromospheric anemone jets outside sunspots in active regions. They are typically 3 to 7 arc seconds = 2000 to 5000 kilometers long and 0.2 to 0.4 arc second = 150 to 300 kilometers wide, and their velocity is 10 to 20 kilometers per second. These small jets have an inverted Y-shape, similar to the shape of x-ray anemone jets in the corona. These features imply that magnetic reconnection similar to that in the corona is occurring at a much smaller spatial scale throughout the chromosphere and suggest that the heating of the solar chromosphere and corona may be related to small-scale ubiquitous reconnection.     

Bovine C-terminal octapeptide of RFamide-related peptide-3 suppresses luteinizing hormone (LH) secretion from the pituitary as well as pulsatile LH secretion in bovines

Gonadotropin-inhibiting hormone (GnIH), observed in quail as a member of the RFamide neuropeptide family, suppresses luteinizing hormone (LH) secretion from the avian pituitary. Rats and cattle have an active gene of another member of the RFamide neuropeptide family, termed RFamide-related peptide-3 (RFRP-3), although bovine RFRP-3 is different from that of rats in both length and amino-acid sequence. A single injection of GnIH or RFRP-3 inhibited LH secretion in rodents, which continued for various periods. This study was conducted to evaluate the effects of bovine C-terminal octapeptide of RFRP-3 (RFRP-3-8) on LH secretion from cultured anterior pituitary (AP) cells of cattle, and the effects of RFRP-3-8 injections on pulsatile LH secretion in castrated male calves. The suppressive effect of RFRP-3-8 on LH secretion from AP cells was observed in the presence of gonadotropin-releasing hormone (GnRH), but not in the absence of GnRH in culture media. In another experiment collecting blood samples serially from castrated male calves with repeated intravenous injections of RFRP-3-8 (n = 6) or saline (n = 6), the RFRP-3-8 group showed suppressed LH pulse frequency during the injection period (P < 0.05); however, the RFRP-3-8 group showed no difference from the saline group in all measures of LH secretion in the postinjection period. In conclusion, our results suggested that RFRP-3-8 suppresses LH secretion from cultured AP cells, as well as LH pulse frequency in cattle.     

Effects of stratification and misspecification of covariates on species distribution models for abundance estimation from virtual line transect survey data

The aim of this study was to examine the effects of stratification of the survey region on the performance of species distribution models (SDMs) described by generalized linear models or generalized additive models when estimating school abundance by using a line transect survey. True covariates that define spatial school distribution are not always obtainable explanatory variables. When the true covariates differ from explanatory variables in the model, the explanatory variables are determined to be misspecified. We evaluated the performance of SDMs in abundance estimation with misspecified covariates by using dummy datasets for which the true abundance was known. Simulated replicates of spatial distributions of a whale school and sighting data were generated from possible scenarios motivated by the spatial school distribution of Antarctic minke whales Balaenoptera bonaerensis. This distribution was obtained from the Japanese Whale Research Program under Special Permit in the Antarctic. Our results showed that the relative bias of the abundance estimators was large when covariates were misspecified and a survey region was stratified. Although stratification of the survey region is intended to produce a conventional line transect estimator with a smaller variance than that of non-stratified survey region, it also acts to increase the bias of the abundance estimate obtained from SDMs.     

Automated acoustic method for counting and sizing farmed fish during transfer using DIDSON

Counting and sizing large farmed fish such as tuna is often performed during their transfer from one net cage to another. Dual-frequency identification sonar (DIDSON) provides an automated fish counting and sizing tool. However, its counter and sizer are not suitable for measuring farmed fish because of net movements due to currents and subsequent frequent image breakups. This paper presents a fully automated acoustic method to count and size farmed fish during fish transfer by using DIDSON imaging. The background is subtracted from the image after being stabilized by an image phase-only correlation method. The segmentation of the fish is obtained by tracing the edges with a contour tracing method. To prevent recounting the same fish, a Kalman filter algorithm was designed and adapted to predict fish movements. Automated counting was performed by analyzing the spatiotemporal trajectory of the track. The separated fish images were searched for and body length was obtained by summing down the centerline segments from the head to the tail of the fish. The proposed system was verified using farmed yellowtail, Seriola quinqueradiata (mean total length 83.1 cm) to obtain a sizing error of mean total length within 2.4 cm.     

First record of wild ephyrae of the giant jellyfish Nemopilema nomurai

To understand the causes and to control harmful blooms of the giant Nomura??s jellyfish Nemopilema nomurai, it is essential to study the seed population (benthic polyps) and its environment. To locate the habitat of polyps, the first step is to find ephyrae shortly after detachment from polyps. We found five ephyrae of N. nomurai of 1?C2?mm diameter for the first time from plankton samples collected at two sites, one specimen in the northwestern East China Sea (32°12.3??N, 123°12??E) and the other four specimens in the Yellow Sea (34°05.8??N, 121°50.0??E), on 22 and 26 May 2011. From the developmental state and water temperature of ca. 16?°C at the sampling stations, the collected ephyrae were estimated to have detached from polyps in early May of the year. Considering the increase of water temperature which induces strobilation and the direction of transport in the northwestern East China Sea and in the Yellow Sea, the locality of the seed polyps of the present specimens is probably the sea-floor close to the Changjiang River mouth and along the coast of Jiangsu Province.