Construction and characterization of a BAC library for sunflower (Helianthus annuus L.)

A bacterial artificial chromosome (BAC) library was constructed using the sunflower (Helianthus annuus L.) restorer line RHA325, which carries the restorer gene Rf1 and the Pl2-gene conferring resistance to downy mildew. High molecular weight DNA was prepared from nuclei using leaf material from two-week old seedlings. The library was constructed using the HindIII site of pBeloBAC11. The current BAC library comprises 104,736 clones. The insert size of the clones varied between 20 and 270 kb, with an average insert size of 60 kb. The whole 1.9× sunflower BAC library was spotted in duplicate on four high-density filters, each carrying 55,296 clones. The content of organellar DNA, which was estimated by colony hybridisation against the mitochondrial probe coxI and the chloroplast probe rbcL, proved to be less than 0.03 and 0.1%, respectively. BAC pools, allowing PCR-based screening, were made and used to identify positive BAC clones for the markers OP-K13_454, closely linked to the restorer gene Rf1. The PCR-based screening was verified by the results obtained for this marker by colony hybridisation.     

Interspecific hybrids of sunflower as a source of Sclerotinia resistance

Sclerotinia sclerotiorum is considered the most devastating pathogen of sunflower grown in humid environments. In this study, progenies of partial hybrids between Helianthus maximiliani, a wild species that has been shown to be resistant to S. sclerotiorum, and H. annuus were characterized by amplified fragment length polymorphism (AFLP) analysis to identify whether there are introgressions from H. maximiliani into the cultivated sunflower at the molecular level. Wild species‐specific fragments as well as fragments not found in either parent were detected. Progenies tended to cluster together according to the original partial hybrids in the dendrogram by the use of bootstrap procedures. The progenies were studied for their reaction to S. sclerotiorum using artificial inoculation of sunflower heads. Some of the progenies showed a higher level of resistance compared with resistant inbred lines. It was possible to identify two AFLP‐fragments which seem to be linked to Sclerotinia resistance.     

Physical carbon‐sequestration mechanisms under special consideration of soil wettability

The protective impact of aggregation on microbial degradation through separation has been described frequently, especially for biotically formed aggregates. However, to date little information exists on the effects of organic‐matter (OM) quantity and OM quality on physical protection, i.e., reduced degradability by microorganisms caused by physical factors. In the present paper, we hypothesize that soil wettability, which is significantly influenced by OM, may act as a key factor for OM stabilization as it controls the microbial accessibility for water, nutrients, and oxygen in three‐phase systems like soil. Based on this hypothesis, the first objective is to evaluate new findings on the organization of organo‐mineral complexes at the nanoscale as one of the processes creating water‐repellent coatings on mineral surfaces. The second objective is to quantify the degree of alteration of coated surfaces with regard to water repellence. We introduce a recently developed trial that combines FTIR spectra with contact‐angle data as the link between chemical composition of OM and the physical wetting behavior of soil particles. In addition to characterizing the wetting properties of OM coatings, we discuss the implications of water‐repellent surfaces for different physical protection mechanisms of OM. For typical minerals, the OM loading on mineral surfaces is patchy, whereas OM forms nanoscaled micro‐aggregates together with metal oxides and hydroxides and with layered clay minerals. Such small aggregates may efficiently stabilize OM against microbial decomposition. However, despite the patchy structure of OM coating, we observed a relation between the chemical composition of OM and wettability. A higher hydrophobicity of the OM appears to stabilize the organic C in soil, either caused by a specific reduced biodegradability of OM or indirectly caused by increased aggregate stability. In partly saturated nonaggregated soil, the specific distribution of the pore water appears to further affect the mineralization of OM as a function of wettability. We conclude that the wettability of OM, quantified by the contact angle, links the chemical structure of OM with a bundle of physical soil properties and that reduced wettability results in the stabilization of OM in soils.     

Changes in penetration resistance of Ultisols from southern China as affected by shearing

Shear stresses and soil properties modified due to stress play an important role during formation of seals in a series of rainfall events and during tillage. The objectives of the study were to evaluate the effects of the penetrometer geometry on the penetration resistance as affected by shearing under different initial soil conditions and to use the information on soil strength to elucidate shearing process. Nine homogenous air-dried soils (<2 mm) were sprayed and stored so as to obtain equilibrium soil water contents. The moist soils were sheared by horizontal displacement of layers of soil particles/aggregates in between hands in one direction. The soil cores were prepared with comparable bulk density before the measurement of maximum penetration resistance (P_max) with a small flat tip and a cone tip penetrometers. At a wide range from 0.05 to 6.2 MPa, P_max was linearly correlated between the small flat tip and the cone tip penetrometers. The conversion ratio was higher under the saturation condition irrespective of the shearing effect. The penetrometer with the small flat tip was more sensitive for the weak soils. Shearing generally increased P_max in most cases, but it decreased P_max for some sandy soils under both saturated and unsaturated conditions and for a clayey soil under the saturated condition. The soil consisting of swelling clay exerted a decrease in P_max. Rearrangement and/or sliding of particles/aggregates and increase in soil suction during shearing were attributed to the increase in P_max. Increase in porosity due to the aggregation during shearing was ascribed to the decrease in P_max. In addition, it was shown that agricultural cultivation resulted in a reduction in soil strength.     

Numerical modeling of water balance for temporary landfill cover in North Germany

At the end of waste disposal in 2005, a temporary mineral system was constructed to cover the waste body of the municipal landfill in Rastorf (N Germany). The aim of this study was to evaluate the effectiveness of this temporary cover system in limiting the infiltration of surface water into the waste body. The numerical modeling for the hydrological year 2012 was performed in FEFLOW 6.0. The required input data for modeling were achieved by laboratory measurements of the saturated hydraulic conductivity and the water retention characteristics of the mineral layers. The assumed initial and boundary conditions were based on in‐situ measurements of matrix potential and volumetric water content at three different measuring points by tensiometers, FDR sensors and observed meteorological conditions. The model was applied according to Darcy's and Richards' equations for variably saturated flow. Our results allowed assessing the components of water balance for a temporary cover system, especially water seepage into the waste body. The correlation between the measured and modeled volumetric soil water content in the layered temporary cover system was observed (R² = 0.56 to 0.90). Deviations between the measured and modeled values are superficially related to the soil´s heterogeneity. In conclusion, the measured and modeled water balance parameters indicate that the temporary coverage system remains effective in limiting the infiltration rate. However, our studies revealed that the calculated and measured water seepage exceeded the values allowable by the German regulations. Additional studies have to assess variations in the soil water characteristics caused by weather‐related wetting and drying cycles and influence of waste settlement changing the profile of slope.     

开拓创新,努力将学报办成诚信优质的学术品牌

《农业生物技术学报》是以报道我国农业生物技术研究工作为主的学术期刊。自1993年创刊以来,在两任主编阎隆飞院士和李季伦院士的领导下,     

Longtime effects of deep groundwater extraction management on water table levels in surface aquifers

Purpose

A longtime monitoring (2003–2013) of groundwater levels and soil moisture was done in a plain tract surrounded by deposits from the Saale glacial stage in northern Germany. The purpose was to document the changes in the soil water regime over time in relation to changes in management of groundwater extraction and to evaluate if the hitherto management has been suitable for plant water supply for the local grassland production.

Materials and methods

Groundwater wells in the surface aquifer were monitored at 11 survey sites, and soil matric potentials were measured with tensiometers at five depths per site. Soil analyses also were done. This report contains the results from three of the 11 survey sites, which best represent the variability of the soils in the area.

Results and discussion

The monitoring showed that groundwater extraction from deep aquifers via individual wells altered the groundwater levels in the surface aquifer, even though there was a distance of several meters depth and a geological parting between the two aquifers. The impact of the groundwater extraction was shown by significant correlations between groundwater levels in the surveyed soils and groundwater extraction rates of individual wells. Climatic factors only affected groundwater levels in individual years. The management of the groundwater extraction from 1977 to 2006 severely lowered the groundwater level in the surface aquifer. Due to a limitation of the groundwater extraction rates and a shift in the degree of capacity utilization of the individual wells from 2006 onward, groundwater levels in the area are recovering. Correspondingly, the contribution of capillary rise to plant water supply has increased within the monitoring period.

Conclusions

The monitoring proves that the present management of groundwater extraction is more suitable for the groundwater situation than past management. However, groundwater levels have not yet obtained a new equilibrium, so continual monitoring is needed.

     

Impact of the use of biofertilizers on cotton ( Gossypium hirsutum ) crop under irrigated agro-ecosystem

High nitrogen fixing, phosphate solubilizing, phytohormones producing isolates of Azotobacter, Azospirillum, Acetobacter and Pseudomonas were used as inoculants for cotton. Important cultures were selected on the basis of their effect on root/shoot length and chemotactic behaviour. Selected bioinoculants were earlier tested for their beneficial properties like nitrogen fixation (ARA), ammonia excretion, IAA production etc. These bio-inoculants were further tested for phosphate solubilization property. Various chosen strains were tested with Desi (HD 123) and American (H 1098) cotton under field conditions (as for wheat). Plant height and boll weight were determined at the time of harvesting whereas survival rate of inoculated bacteria was determined after 30, 80 and 130 days respectively. In the year 2000–01, on the basis of boll number and boll weight plant^?1 AVK 51 (36; 76.2?g plant^?1), HT 57 (27; 56.9?g plant^?1), AC18 (33; 61.5?g plant^?1), Ala 27 (36; 61.4?g plant^?1) and Pseudomonas (34; 71.3?g plant^?1) were identified as significant both for American and desi cotton varieties. Highest survival rate was observed with Mac 68 (33.4 × 10⁵) followed by HT54 (31.5 × 10⁵) after 30 days of sowing, which decreased after 80 days and remained constant up to 130 days. This trend was observed with all the cultures. Similar results were observed in 2001–02. 25?kg ha^?1 N saving was observed with A. chroococcum (AVK51) bioinoculant for cotton crop.