Degradation of scrapie associated prion protein (PrPSc) by the gastrointestinal microbiota of cattle

A food-borne origin of the transmission of bovine spongiform encephalopathy (BSE) to cattle is commonly assumed. However, the fate of infectious prion protein during polygastric digestion remains unclear. It is unknown at present, whether infectious prion proteins, considered to be very stable, are degraded or inactivated by microbial processes in the gastrointestinal tract of cattle. In this study, rumen and colon contents from healthy cattle, taken immediately after slaughter, were used to assess the ability of these microbial consortia to degrade PrP(Sc). Therefore, the consortia were incubated with brain homogenates of scrapie (strain 263K) infected hamsters under physiological anaerobic conditions at 37 degrees C. Within 20 h, PrP(Sc) was digested both with ruminal and colonic microbiota up to immunochemically undetectable levels. Especially polymyxin resistant (mainly gram-positive) bacteria expressed PrP(Sc) degrading activity. These data demonstrate the ability of bovine gastrointestinal microbiota to degrade PrP(Sc) during digestion.     

Cloudy apple juice is more effective than apple polyphenols and an apple juice derived cloud fraction in a rat model of colon carcinogenesis

As recently shown, a cloudy apple juice (CloA) was effective to modulate colon cancer associated parameters in rats treated with 1,2-dimethylhydrazine (DMH). To identify the bioactive substance classes in CloA, we fractionated CloA to yield a total polyphenol (PF) and a cloud (CF) fraction consisting of proteins, fatty acids, polyphenols, and cell wall polysaccharides. Rats received water (control (Cont)) or CloA, PF, and CF separate or combined (PF-CF) ad libitum for 7 weeks starting one week before the first DMH-injection. As determined by comet assay, the DMH-induced genotoxicity in colonocytes of controls (Cont/DMH: 7.7 +/- 0.5%) was significantly reduced by CloA (3.3 +/- 0.3%) but not by any of the fractions. The crypt cell proliferation induced by DMH (Cont/NaCl: 7.5 +/- 0.6%; Cont/DMH: 14.9 +/- 0.8%) was significantly decreased by CloA (9.4 +/- 0.4%), PF (12.4 +/- 0.7%), CF (11.6 +/- 0.4%), and PF-CF (12.4 +/- 0.6%). Although not statistically significant, CloA tended to reduce the number of large aberrant crypt foci (ACF) (Cont/DMH: 19.0 +/- 3.7; CloA/DMH: 12.3 +/- 1.9), while none of the fractions affected ACFs. Neither CloA nor the fractions changed mRNAs of colonic cyclooxygenases (COX-1, COX-2), glutathione-associated enzymes (GST-M2, gamma-GCS, GST-P), the splenocyte CD4/CD8 ratio, natural killer cell activity, and plasma antioxidant status. These results demonstrate that CloA had a higher cancer-preventive potential than the fractions and further, besides PF, identified CF as an additional bioactive fraction of CloA.     

Effect of region on the uncertainty in crop variety trial programs with a reduced number of trials

Results from crop variety trials may vary between geographical regions because of differences in climate and soil types. Results are usually presented at regional level. To evaluate the importance of the regions used in the Swedish variety trial programs, we examined which regions produced similar levels of yield and similar ratios in yield between cultivars; the amount by which variance could be reduced by division into regions or clusters of regions; and the amount of trials per region and year, replicates per trial, and trials per year required in order to fulfill specifications on the precision of results. Yield data from spring barley and winter wheat trials performed during 1997–2006 were studied using cluster analysis and variance component estimation. The objectives were (1) to discuss the effects of regions on precision when the number of trials has decreased; (2) to demonstrate the method; and (3) to report the results obtained. In spring barley, clusters of regions produced different levels of yield, but similar yield ratios between cultivars. In winter wheat, clusters of regions giving different yield ratios were identified. When the option of a single analysis was compared with that of region-wise analysis, the reduction in variance with the former, due to the larger number of trials, outweighed the reduction in variance with the latter due to decreased random interaction between trials and cultivars.     

Plant,Microbial and Soil Factors,Determining Nitrogen Fixation in the Rhizosphere

A genotype effect on associative (rhizosphere) N₂-fixation was observed with two cultivars of Sorghum bicolor (nutans) with a maximum rate of 8 μmol C₂H₄ · h^?1 · plant^?1 in one genotype compared to 0.9 μmol in the other. Characteristics of the high fixing genotype were a reduced transpiration rate, a lower number of stomata and increased root exudate production per gram root dry weight with higher concentration of dicarboxylic acids. The bacterial rhizosphere composition revealed a three times higher number of N₂-fixing bacteria, a tenfold reduction of actinomycetes and a threefold reduction of Arthrobacter associated with the high fixing cultivar compared to the low fixing genotype. From these and other plant rhizospheres two new nitrogen fixing bacteria, Pseudomonas stutzeri and Erwinia herbicola, were characterized. With the N₂-fixing bacteria Azospirillum brasilense and Klebsiella pneumoniae an enhancement of specific nitrogenase activity by aromatic compounds, for example phenolics, the herbicide alachlor and the insecticide carbofuran was demonstrated. An oscillating nitrogenase activity in Azospirillum brasilense under microaerobic conditions was found, resulting from an encystation and deencystation under those conditions. Experiments with wheat roots demonstrated that reduced oxygen tensions, essential for a maximum rhizosphere N₂-fixation, reduced root growth significantly and altered the N-metabolism of the roots.     

Direct observation of continuous electric dipole rotation in flux-closure domains in ferroelectric Pb(Zr,Ti)O₃

Low-dimensional ferroelectric structures are a promising basis for the next generation of ultrahigh-density nonvolatile memory devices. Depolarization fields, created by incompletely compensated charges at the surfaces and interfaces, depress the polarization of such structures. Theory suggests that under conditions of uncompensated surface charges, local dipoles can organize in flux-closure structures in thin films and vortex structures in nano-sized ferroelectrics, reducing depolarization fields. However, the continuous rotation of the dipoles required in vortex structures and the behavior of unit cell dipoles in flux-closure structures have never been experimentally established. By aberration-corrected transmission electron microscopy, we obtained experimental evidence for continuous rotation of the dipoles closing the flux of 180° domains in a ferroelectric perovskite thin film.     

The endocast of MH1, Australopithecus sediba

The virtual endocast of MH1 (Australopithecus sediba), obtained from high-quality synchrotron scanning, reveals generally australopith-like convolutional patterns on the frontal lobes but also some foreshadowing of features of the human frontal lobes, such as posterior repositioning of the olfactory bulbs. Principal component analysis of orbitofrontal dimensions on australopith endocasts (MH1, Sts 5, and Sts 60) indicates that among these, MH1 orbitofrontal shape and organization align most closely with human endocasts. These results are consistent with gradual neural reorganization of the orbitofrontal region in the transition from Australopithecus to Homo, but given the small volume of the MH1 endocast, they are not consistent with gradual brain enlargement before the transition.     

Enhanced glucosinolates in root exudates of Brassica rapa ssp. rapa mediated by salicylic acid and methyl jasmonate

Elicitation studies with salicylic acid (SA) and methyl jasmonate (MJ) inducing a targeted rhizosecretion of high levels of anticarcinogenic glucosinolates in Brassica rapa ssp. rapa plants were conducted. Elicitor applications not only led to an accumulation of individual indole glucosinolates and the aromatic 2-phenylethyl glucosinolate in the turnip organs but also in turnip root exudates. This indicates an extended systemic response, which comprises the phyllosphere with all aboveground plant organs and the rhizosphere including the belowground root system and also root exudates. Both elicitor applications induced a doubling in 2-phenylethyl glucosinolate in root exudates, whereas application of MJ enhanced rhizosecreted indole glucosinolates up to 4-fold. In addition, the time course study revealed that maximal elicitation was observed on the 10th day of SA and MJ treatment. This study may provide an essential contribution using these glucosinolates as bioactive additives in functional foods and nutraceuticals.     

Tree roots in canopy soils of old European beech trees—An ecological reassessment of a forgotten phenomenon

The formation of adventitious roots in humus accumulations in tree canopies is widely acknowledged from tropical and temperate rainforests, while the occurrence of those canopy roots in temperate tree species under mesic climates has been largely disregarded for ca. 100 years. Moreover, almost nothing is yet known of the ecological growth conditions or the structure or morphology of such canopy root systems. This study reports on the occurrence of tree fine roots in crown humus pockets of old European beech (Fagus sylvatica L.) trees. The aim was to compare these canopy roots with the fine roots in the terrestrial organic layer soil in terms of fine root biomass density, root morphological traits, ectomycorrhizal colonisation and chemical composition of the root tissue, and to relate these root traits to the chemical properties of the respective soils. Fine root biomass density in crown humus pockets was ca. 7 times higher than in the terrestrial organic layer, even though soil chemical properties of both rooting media were similar. Fine roots in the canopy differed from terrestrial fine roots by lower specific root tip abundance, specific root length, and specific root surface area, all of which points to a longer lifespan of the fine roots in the canopy. Moreover, canopy roots revealed a lower percentage of root tips colonised by ectomycorrhizal fungi than terrestrial roots (87% vs. 93%). Chemical composition of the root tissue in canopy and terrestrial soils was similar for most elements, but canopy roots showed lower P, Fe, and Al concentrations and a higher N/P ratio than terrestrial roots. Root P concentrations of both canopy and terrestrial fine roots were closely related to soil P concentration, but not to soil C/P or N/P ratios. On the other hand, tissue N of canopy roots, but not of terrestrial roots, revealed a clear dependence on soil N and C/N values, suggesting a more limited N availability in the canopy soil compared to the terrestrial organic layer. However, the overall small differences in soil chemical properties between canopy and terrestrial organic layer soil cannot explain the markedly higher volumetric root density in the crown humus and the differences in ecomorphological traits between canopy and terrestrial soil. Instead, it is speculated that these differences are more likely a result of temporarily high water availability in crown humus pockets due to high water flow along the surface of branches to the central crown parts of the beech trees.