Short-Term Response of Soil Microbial Biomass to Different Chabazite Zeolite Amendments

Zeolitites (ZTs) are rocks containing more than 50% of zeolite minerals and are known to be a suitable material for agricultural purposes by improving soil physicochemical properties and nitrogen (N) use efficiency. However, little is known about their effects on soil microbial biomass. This study aimed to evaluate short-term effects of different chabazite-rich ZT (CHAZT) amendments on soil microbial biomass and activity. A silty-clay agricultural soil was amended in three different ways, including the addition of natural (5% and 15%) and NH_4~+-enriched (10%) CHAZT. Soil dissolved organic carbon (C), total dissolved N, NH_4~+, NO_3~-, NO_2~-, microbial biomass C and N, and ergosterol were measured periodically over 16 d in a laboratory incubation. To verify the microbial immobilization of the N derived from NH_4~+-enriched CHAZT, a high15N source was used for enriching the mineral to measure the microbial biomass δ15N signature. An increase in the ergosterol content was observed in the soil amended with 5% natural CHAZT. However, no similar result was observed in the soil amended with 15% natural CHAZT, suggesting that the fungal biomass was favored at a lower CHAZT application rate. In the soil amended with NH+ 4-enriched CHAZT, microbial biomass N was related to NO_3~-production over time and inversely related to NH_4~+, suggesting high nitrification process. Isotopic measurements on microbial biomass confirmed immediate assimilation of N derived from NH_4~+-enriched CHAZT. These results suggested that the NH_4~+-enriched CHAZT used in this study supplied an immediately available N pool to the microbial biomass.     

Potential Biomedical Applications of Collagen Filaments derived from the Marine Demosponges Ircinia oros (Schmidt, 1864) and Sarcotragus foetidus (Schmidt, 1862)

Collagen filaments derived from the two marine demosponges Ircinia oros and Sarcotragus foetidus were for the first time isolated, biochemically characterised and tested for their potential use in regenerative medicine. SDS-PAGE of isolated filaments revealed a main collagen subunit band of 130 kDa in both of the samples under study. DSC analysis on 2D membranes produced with collagenous sponge filaments showed higher thermal stability than commercial mammalian-derived collagen membranes. Dynamic mechanical and thermal analysis attested that the membranes obtained from filaments of S. foetidus were more resistant and stable at the rising temperature, compared to the ones derived from filaments of I. oros. Moreover, the former has higher stability in saline and in collagenase solutions and evident antioxidant activity. Conversely, their water binding capacity results were lower than that of membranes obtained from I. oros. Adhesion and proliferation tests using L929 fibroblasts and HaCaT keratinocytes resulted in a remarkable biocompatibility of both developed membrane models, and gene expression analysis showed an evident up-regulation of ECM-related genes. Finally, membranes from I. oros significantly increased type I collagen gene expression and its release in the culture medium. The findings here reported strongly suggest the biotechnological potential of these collagenous structures of poriferan origin as scaffolds for wound healing.     

Flow cytometric analysis of colonic and small intestinal mucosal lymphocytes obtained by endoscopic biopsy in the healthy dog

Flow cytometric analysis of the lymphocyte population of the gut could provide useful information on the immune cells present in the gut that would not be easily obtained in tissue sections. However, little is known of the normal lymphocyte population in the canine gut as determined by flow cytometry, which allows for simultaneous staining of multiple cell surface antigens and identification of specific lymphocytic subsets. Therefore, intraepithelial lymphocytes were obtained from biopsies of the healthy canine proximal small intestine and colon taken with an endoscope, and flow cytometric analysis was used to characterize the lymphocyte subsets present. Endoscopic biopsy of the intestine is a minimally invasive technique commonly used for diagnostic purposes. Although CD3+ lymphocytes were the most abundant subset in both colon and small intestine, CD3+/CD8- lymphocytes predominated in the proximal small intestine, whereas CD3+/CD8+ lymphocytes did in the colon. Canine CD8+ intraepithelial lymphocytes were predominantly CD8alphabeta+ in both small intestine and colon. CD4+ intraepithelial lymphocytes were always much less numerous than CD8+ intraepithelial lymphocytes. As in man, a majority of intraepithelial lymphocytes expressed the T-cell receptor, TCRalphabeta, but TCRgammadelta was expressed by a third of intraepithelial T-cells in the proximal small intestine, and approximately 15% of those in the colon. Very few CD21+ lymphocytes were detected in samples of healthy canine colon and small intestinal intraepithelial cells. We have showed that canine intraepithelial lymphocytes are regionally specialized, and that those from the small intestine are unique in comparison to those of other species such as man and rodents due to the large numbers of CD3+/CD8- intraepithelial lymphocytes. This study provides a baseline for comparison with intraepithelial lymphocytes obtained from canine patients with intestinal disease.     

Evidence for niche differentiation of nitrifying communities in grassland soils after 44 years of different field fertilization scenarios

Long-term nitrogen(N)fertilization imposes strong selection on nitrifying communities in agricultural soil,but how a progressively changing niche affects potentially active nitrifiers in the field remains poorly understood.Using a 44-year grassland fertilization experiment,we investigated community shifts of active nitrifiers by DNA-based stable isotope probing(SIP)of field soils that received no fertilization(CK),high levels of organic cattle manure(HC),and chemical N fertilization(CF).Incubation of DNA-SIP microcosms showed significant nitrification activities in CF and HC soils,whereas no activity occurred in CK soils.The 44 years of inorganic N fertilization selected only 13C-ammonia-oxidizing bacteria(AOB),whereas cattle slurry applications created a niche in which both ammonia-oxidizing archaea(AOA)and AOB could be actively13C-labeled.Phylogenetic analysis indicated that Nitrosospira sp.62-like AOB dominated inorganically fertilized CF soils,while Nitrosospira sp.41-like AOB were abundant in organically fertilized HC soils.The 13C-AOA in HC soils were affiliated with the 29i4 lineage.The 13C-nitrite-oxidizing bacteria(NOB)were dominated by both Nitrospira-and Nitrobacter-like communities in CF soils,and the latter was overwhelmingly abundant in HC soils.The 13C-labeled nitrifying communities in SIP microcosms of CF and HC soils were largely similar to those predominant under field conditions.These results provide direct evidence for a strong selection of distinctly active nitrifiers after 44 years of different fertilization regimes in the field.Our findings imply that niche differentiation of nitrifying communities could be assessed as a net result of microbial adaption over 44 years to inorganic and organic N fertilization in the field,where distinct nitrifiers have been shaped by intensified anthropogenic N input.     

Long-term trends in dominant-height growth of black pine using dynamic models

Black pine (Pinus nigra Arn.) is a pan-Mediterranean species of high ecological importance and one of the most important timber species in the area. We compare several site dependent height–age models for the species in three regions along its natural distribution area in Spain. The best model was a generalized algebraic difference approach (GADA) polymorphic model with variable asymptotes (Cieszewski, C.J., Bailey, R.L., 2000. Generalized algebraic difference approach: theory based derivation of dynamic site equations with polymorphism and variable asymptotes. For. Sci. 46, 116–126). There was no significant increase in error when a reduced model common to the three regions was tested instead of a full model with region-specific parameters. To study possible biases of the proposed model along the trees’ lifespan we carried out a LOWESS analysis of residuals in time. We detected deviations in the model residuals, and a patent growth reduction in the 1960s and 1970s, which might be related to climate and/or changing stand characteristics. Departures from estimated mean past growth should be monitored in the future to adapt models to a changing environment.     

Correlation between lipid peroxidation and phenolics content in leaves and roots of sugar beet infected with Rhizoctonia solani

The correlation between intensity of lipid peroxidation and changes in antioxidant capacity of sugar beet plants (cv. ‘Drena’) infected with Rhizoctonia solani Kühn isolate (AG 2-2 IIIB group) was studied. Successful inoculation was confirmed by the presence of infection cushions in a cross section of leaf petioles. On the 7^th day of the experiment, phenylalanine ammonia-lyase (PAL; EC. 4.3.1.5) activity was in negative correlation with intensified lipid peroxidation process in leaves of sugar beet plants (r= –0 .99). Also, in leaves and roots of inoculated sugar beet plants, total flavonoids content (35% and 20%, respectively) and 1,1-diphenyl-2-picrylhydrazyl (DPPH)-scavenging activity (80% and 55%, respectively) were significantly reduced. Necrotic processes resulting from R. solani infection of sugar beet plants was followed by induction of plant phenolics metabolism; however, antioxidant capacity of these plants was reduced.     

A high-density Diversity Arrays Technology (DArT) microarray for genome-wide genotyping in <Emphasis Type="Italic">Eucalyptus</Emphasis>

Background  

A number of molecular marker technologies have allowed important advances in the understanding of the genetics and evolution of Eucalyptus, a genus that includes over 700 species, some of which are used worldwide in plantation forestry. Nevertheless, the average marker density achieved with current technologies remains at the level of a few hundred markers per population. Furthermore, the transferability of markers produced with most existing technology across species and pedigrees is usually very limited. High throughput, combined with wide genome coverage and high transferability are necessary to increase the resolution, speed and utility of molecular marker technology in eucalypts. We report the development of a high-density DArT genome profiling resource and demonstrate its potential for genome-wide diversity analysis and linkage mapping in several species of Eucalyptus.     

Hybridization of two diploid Vaccinium section Cyanococcus species with diploid Vaccinium arboreum in section Batodendron

Several characteristics from sparkleberry (V. arboreum) would be useful if transferred to highbush blueberry cultivars, but to date all direct crosses have failed. The purpose of this research was to see whether crosses of diploid V. darrowii and diploid V. fuscatum (both section Cyanococcus) with diploid V. arboreum (section Batodendron) could be made and to assess the possibility of transferring traits from V. arboreum into cultivated blueberries of section Cyanococcus. Many crosses were successful and easy to make. Crosses were more productive when V. arboreum was the pollen parent, but some hybrids were also obtained with V. arboreum as seed parent. Pollen stainability of F₁ (V. darrowii × V. arboreum) hybrids was low, ranging from 0.9 to 23.7%. Numerous meiotic abnormalities were found in the F₁ hybrids. These led to a high percentage of incomplete and unstained tetrads and probably to the production of unreduced gametes.