The V-antigen of Yersinia forms a distinct structure at the tip of injectisome needles

Many pathogenic bacteria use injectisomes to deliver effector proteins into host cells through type III secretion. Injectisomes consist of a basal body embedded in the bacterial membranes and a needle. In Yersinia, translocation of effectors requires the YopB and YopD proteins, which form a pore in the target cell membrane, and the LcrV protein, which assists the assembly of the pore. Here we report that LcrV forms a distinct structure at the tip of the needle, the tip complex. This unique localization of LcrV may explain its crucial role in the translocation process and its efficacy as the main protective antigen against plague.     

The needle length of bacterial injectisomes is determined by a molecular ruler

Size determination represents a fundamental requirement for multicomponent biological structures. Some pathogenic bacteria possess a weapon derived from the flagellum. Like the flagellum, this type-III secretion apparatus, called the injectisome, has a transmembrane basal body, but the external component is a needle-like structure instead of a hook and a filament. Here, we provide evidence that the length of this needle is determined by the size of a protein, YscP, acting as a molecular ruler.     

Effects of different management practices on the soil–water balance and crop yield for improved dryland farming in the Chinese Loess Plateau

Field experiments were carried out to study the effects of different soil management practices on the water balance, precipitation use efficiency (PUE), and crop yield (i.e. winter wheat and peanut) on a loess soil near Luoyang (east edge of the Chinese Loess Plateau, Henan Province, China). Field plots were set up in 1999 including following soil management practices: subsoiling with mulch (SS), no-till with mulch (NT), reduced tillage (RT), two crops per year (i.e. winter wheat and peanut, TC), and a conventional tillage control (CT). The field plots were equipped to monitor all components of the soil–water balance except evapotranspiration, which was computed by solving the water balance equation. The results showed that although soil management had smaller influence on the magnitude of the water balance components than did precipitation variations, small influences of the applied soil management practices on water conservation during the fallow period can greatly affect winter wheat yield. SS increased consistently precipitation storage efficiency (PSE) and PUE over the 5 years compared to CT except during the wettest year. NT also had a noticeable effect on postharvest water storage during the fallow period; however, the influence on yield of NT depended on the amount of precipitation. TC lowered the winter wheat yield mainly due to the unfavorable soil moisture conditions after growing peanut in summer; however, the harvested peanut gained an extra profit for the local farmer. No matter which kind of soil management practices was adapted, PSE never exceeded 41.6%, which was primarily attributed to high evapotranspiration. From data of five consecutive agricultural years between 2000 and 2005, it could be concluded that SS resulted in the highest PSE, PUE and crop yield. TC also showed promising results considering the economic value of the second crop. NT performed slightly less as SS. CT gave intermediate results, whereas RT was the worst alternative.     

Species-specific earthworm population responses in relation to flooding dynamics in a Dutch floodplain soil

Earthworms dominate the animal biomass in moist floodplain soils. They are known to survive long periods in aerated water, but little is known about earthworm population dynamics in floodplain systems with changing inundation frequencies. This study determined earthworm population dynamics in a floodplain system, in relation to frequency and duration of flooding events. From October 2000 to May 2003 earthworms were hand sorted in the ‘Afferdensche en Deestsche Waarden’, a floodplain on the south bank of the river Rhine, near Druten, The Netherlands. Earthworm numbers and biomasses per age class (adult, subadult, juvenile) were recorded. Numbers and biomasses tend to decrease during flooding. Lumbricus terrestris was found in high numbers (>10/m²) only at the end of a flooding period. Allolobophora chlorotica was hardly affected by flooding; their biomass remained stable during the year. Aporrectodea caliginosa showed fluctuating numbers and biomasses during the sampling period that did not correlate with flooding frequency. Numbers and biomasses of Lumbricus rubellus were strongly reduced at the end of each flooding event, but their population densities fully recovered until next flooding event. Earthworm populations in floodplains fluctuate in time, depending on the season and on the time, duration and frequency of flooding. Different earthworm species react differently towards these flooding dynamics.     

The induction of sporulation in sclerotinia fructicola and some other fungi and the production of “P310”

Evidence is presented suggesting that the sporulation ofS. fructicola probably proceeds by several phases. Light stimulates development of primordia but inhibits conidia formation.P₃₁₀, for the first time mentioned by Leach, does not have a sporogenic character. It is, however, a photo product of a metabolic substance formed by the fungus. The production of P₃₁₀ is much higher in mycelium cultivated in light of short wave-lengths and increases with the intensity of the light.The P₃₁₀-production is not common for all fungi. It is possible that the precursor for the photochemical reaction is missing in the mycelium of fungi, which do not produce the factor.Samenvatting De groeistadia vanSclerotinia fructicola werden bij het kweken in licht en donker bestudeerd. De groei begint met de vorming van hyfen in de agar, daarna treden de toppen van bepaalde hyfen boven de agar uit (primordia) en vormen conidioforen en conidiën. In continu donker verloopt dit proces zoals boven weergegeven, doch in continu licht (4800 Lux of hoger) wordt wel het mycelium in de agar gevormd en de primordia aangelegd, doch dan stopt het groeiproces. Bij lichtintensiteiten lager dan 4800 Lux vindt wel de vorming van conidioforen plaats. Deze verheffen zich boven de agar en zijn spaarzaam vertakt in tegenstelling tot de conidioforen, die in het donker gevormd worden. Deze zijn rijkelijk vertakt en vormen als het ware een mat op de agar.De groiisnelheid van het mycelium is in licht en donker even groot.Gaat aan de donkerperiode een lichtperiode vooraf, dan is deze van geen invloed op de sporulatie, mits de donkerperiode langer dan 48 uur duurt. Is deze korter, dan blijft het mycelium dat vóór de donkerperiode gevormd is, achter in sporulatie.Licht voorfgaande aan een donkerperiode van 15 uur, stimuleert in het jongste mycelium de sporulatie. Het licht heeft zowel een stimulerende als een remmende invloed.P₃₁₀, voor het eerst door Leach vermeld, bleek geen sporegene stof; het is echter een stof, die onder invloed van licht ontstaat uit een stofwisselingsprodukt van de schimmel.Bij de vorming van P₃₁₀ is licht van kortere golflengte van groter invloed dan licht met langere golflengte en de P₃₁₀-productie neemt toe met de intensiteit van het gebruikte licht.De vorming van P₃₁₀ komt niet voor bij alle fungi. Het is mogelijk dat de precursor voor de fotochemische reactie ontbreekt in het mycelium van deze schimmels.     

Disruption and reassociation of casein micelles under high pressure: influence of milk serum composition and casein micelle concentration

In this study, factors influencing the disruption and aggregation of casein micelles during high-pressure (HP) treatment at 250 MPa for 40 min were studied in situ in serum protein-free casein micelle suspensions. In control milk, light transmission increased with treatment time for approximately 15 min, after which a progressive partial reversal of the HP-induced increase in light transmission occurred, indicating initial HP-induced disruption of casein micelles, followed by reformation of casein aggregates from micellar fragments. The extent of HP-induced micellar disruption was negatively correlated with the concentration of casein micelles, milk pH, and levels of added ethanol, calcium chloride, or sodium chloride and positively correlated with the level of added sodium phosphate. The reformation of casein aggregates during prolonged HP treatment did not occur when HP-induced disruption of casein micelles was limited (<60%) or very extensive (>95%) and was promoted by a low initial milk pH or added sodium phosphate, sodium chloride, or ethanol. On the basis of these findings, a mechanism for HP-induced disruption of casein micelles and subsequent aggregation of micellar fragments is proposed, in which the main element appears to be HP-induced solubilization of micellar calcium phosphate.     

Comparison of Soil Clean-up Standards for Trace Elements Between Countries: Why do they differ? (9 pages)

Goal, Scope and Background

In the nineteen nineties most European countries issued legislation on soil protection, including soil contamination. In the case of a presumed contamination, soil investigation mostly follows a stepwise approach starting with a preliminary investigation, then an in-depth investigation and, finally, remediation. Soil clean-up standards are often foreseen as trigger criteria to determine the need for an in-depth soil investigation or for remediation. There are however large differences in soil clean-up standards. This is partly because of the different roles of soil clean-up standards in each legislative framework and partly because of differences in the soil clean-up standard (SCS) derivation procedures. Despites these differences there are large similarities in the concepts of the derivation procedures for clean-up standards. A better understanding of the differences in clean-up standards is needed. In order to clarify the variation, the background of the clean-up standards for a selected number of countries was investigated. The objective of this paper is to investigate the underlying reason why country-wide generic soil and groundwater clean-up standards of eight trace elements (cadmium, chromium (III), copper, mercury, lead, nickel, zinc and arsenic) differ between the selected countries.

Main Features

To avoid misinterpretation of the differences in application of the clean-up standards, a short overview of the legislative role of clean-up standards is given first. Differences in model concepts and parameter values are discussed, followed by a comparison of the generic soil and groundwater clean-up standards for trace elements and a discussion on the sources of variation. The influence of the use of ecotoxicological criteria and data for the derivation of soil clean-up standards will be discussed in more detail. Selected countries were Canada, the Flemish Region (Belgium), France, Germany, Great-Britain, the Netherlands, Norway, Sweden, Switzerland and United States of America (USA).

Results and Discussion

When soil clean-up standards for eight trace elements (cadmium, chromium (III), copper, mercury, lead, nickel, zinc and arsenic) were compared between the selected countries differences of more than a factor 1000 arose. Notwithstanding the use of similar derivation procedures, differences were caused by the use of different software models with their specific input data, boundary conditions and applied protection criteria for humans and the ecology. Ecotoxicological criteria tend to lower the soil clean-up standard for the selected trace elements.

Conclusions

In the countries that are included in this study, clean-up standards are used is different ways, this is for the determination of the necessity for remediation or for the need for further soil investigation. This paper shows a wide variation in the clean-up standards, which has further implication on the decision for remediation or further investigation and, hence, the financial costs of soil management. All the clean-up standards have as primary goal the protection of human health. A number of countries also include the protection of the ecological function of the soil. Differences in selected software model, (standard) parameters values, selected human toxicological and ecotoxicological criteria, are reason for a substantial variation in the clean-up standards for trace elements.

Recommendations and Perspective

. Is this variation justified? The derivation of soil clean-up standards involves - besides scientific elements - political elements, like differentiation in landuse types (agricultural, residential, recreational, industrial), receptor at risk or protection level. It is obvious that harmonization of these elements will be complicated. However, a European action programme, like the thematic strategy for soil protection, could initiate this process of harmonization. Nevertheless, soil-clean-up standards could never be uniform over the whole of Europe because they include country specific elements (geographical, ethnological) and political decisions.     

A systematic survey of loss-of-function variants in human protein-coding genes

Genome-sequencing studies indicate that all humans carry many genetic variants predicted to cause loss of function (LoF) of protein-coding genes, suggesting unexpected redundancy in the human genome. Here we apply stringent filters to 2951 putative LoF variants obtained from 185 human genomes to determine their true prevalence and properties. We estimate that human genomes typically contain ~100 genuine LoF variants with ~20 genes completely inactivated. We identify rare and likely deleterious LoF alleles, including 26 known and 21 predicted severe disease-causing variants, as well as common LoF variants in nonessential genes. We describe functional and evolutionary differences between LoF-tolerant and recessive disease genes and a method for using these differences to prioritize candidate genes found in clinical sequencing studies.     

Influence of landuse on soil erosion risk in the Cuyaguateje watershed (Cuba)

Landuse changes may dramatically enhance erosion risk. Besides deforestation, also arable landuse may have an important influence on soil loss. We investigated the erosion risk in a 151 km² subwatershed of the Cuyaguateje watershed (Cuba) using the RUSLE model. It was found that the valleys used for agriculture have the highest erosion risk, with actual erosion surpassing soil loss tolerance. Over the period 1985–2000, about 14 km² of forest has been converted into arable land. As a result, the area with a very high erosion risk increased with 12%. On arable land it was found that the crop management factor C of a “tobacco/maize” rotation was 0.478, compared to 0.245 for a rotation of various crops (sweet potato, beans, maize, cassava and fallow). When maize in the “tobacco/maize” rotation was intercropped with a leguminous crop (hyacinth bean) the C factor decreased to a value of 0.369. Also contouring may halve soil loss on moderate slopes (< 10%) when high ridges are applied, which is in Cuba generally the case for maize, cassava and sweet potato.     

A dose‐escalation study of combretastatin A4‐phosphate in healthy dogs

Combretastatin A4 ‐Phosphate (CA4P ) is a vascular disrupting agent revealing promising results in cancer treatments for humans. The aim of this study was to investigate the safety and adverse events of CA4P in healthy dogs as a prerequisite to application of CA4P in dogs with cancer. Ten healthy dogs were included. The effects of escalating doses of CA4P on physical, haematological and biochemical parameters, systolic arterial blood pressure, electrocardiogram, echocardiographic variables and general wellbeing were characterised. Three different doses were tested: 50, 75 and 100 mg m^?2. At all 3 CA4P doses, nausea, abdominal discomfort as well as diarrhoea were observed for several hours following administration. Likewise, a low‐grade neutropenia was observed in all dogs. Doses of 75 and 100 mg m^?2 additionally induced vomiting and elevation of serum cardiac troponine I levels. At 100 mg m^?2, low‐grade hypertension and high‐grade neurotoxicity were also observed. In healthy dogs, doses up to 75 mg m^?2 seem to be well tolerated. The severity of the neurotoxicity observed at 100 mg m^?2, although transient, does not invite to use this dose in canine oncology patients.