Global phylogeography of the smooth hammerhead shark: Glacial refugia and historical migration patterns

1. Extreme climate changes during the Cenozoic Era strengthened different biogeographical barriers that decreased the connectivity among populations, triggering lineage diversification of different species worldwide.
2. The mitochondrial DNA control region was employed to explore the phylogeography of Sphyrna zygaena, a globally distributed species threatened by unsustainable, illegal, unreported and unregulated fisheries triggered by the international shark fin trade. It is listed as ‘Vulnerable’ by the IUCN Red List and its trade is regulated by CITES Appendix II.
3. Only 13 haplotypes were found with low genetic diversity levels (hd = 0.686 ± 0.014; π = 0.00206 ± 0.00004) compared with other species of the Sphyrnidae family. The species has a very strong phylogeographic population structure among the Atlantic, Indian and Pacific Oceans (Φ_ST = 0.79132). Worldwide, there are six distinct populations with some haplotype sharing.
4. These populations are probably connected by a stepping-stone dispersal of a small number of migrants per generation from the Indo-Pacific towards the Atlantic. Modelling suggests that S. zygaena diverged into two lineages around 6.96 million years ago which have been isolated in glacial refuges in the Atlantic and Indo-Pacific oceans; and after deglaciation, a population expansion probably permitted secondary contact.
5. Conservation plans to establish differentiated management units should be adopted in each of the identified populations. Among these, the Eastern Central Atlantic and West Indo-Pacific are the most important areas for the species considering the historical migration routes that act as a bridge connecting the Atlantic and Indo-Pacific Oceans while the Gulf of Guinea connects the Atlantic populations. Still, further studies are required to know if these populations are also linked with nursery areas for the species.
6. The results herein can help to delimit the main evolutionarily significant units to implement effective policies to establish differentiated management units as starting points to genetic monitoring programmes for Sphyrna zygaena.

     

Anatomical variations in cervical vertebrae in two species of neotropical canids: What is the meaning?

Anatomical variation in wild canids is rarely described. Altered shapes, uni- or bilaterally situated, were observed in ventral laminae of C6 and/or in C7 vertebral body of two fox species: Lycalopex gymnocercus and Cerdocyon thous. The specimens were young adults, collected dead on highways in southern Brazil. Deformities were considered anatomical variations because apparently there was no interference in function. The occurrence of such variations in two related species from the same area can suggest an environmental common cause rather than genetic issues. Future studies may deepen the understanding between cause and effect of these vertebral deformities in wild canids.     

Dynamics of surface water quality driven by distinct urbanization patterns and storms in a Portuguese peri-urban catchment

Purpose

Although the influences of urban land use on water quality have been widely investigated, the impacts of different urbanization patterns, particularly in Mediterranean environments, are not well understood. Focussing on a Portuguese peri-urban catchment with 40 % urban cover, this paper explores (1) the impact of areas with differing urban extent and storm drainage system on streamwater quality and (2) temporal variations driven by season and storm events of differing magnitude, intensity and antecedent weather.

Materials and methods

Water quality was assessed at the catchment outlet (E) and for three upstream tributaries: (1) Porto Bordalo (PB), 39 % urban with a new major road and piping of some overland flow from impervious surfaces directly into the stream; (2) Espírito Santo (ES), 49 % urban, mostly comprising detached houses surrounded by gardens, and with overland flow infiltrating into downslope pervious soils; and (3) Quinta (Q), 22 % urban with partial piping of overland flow from a recent enterprise park area. Water samples were collected at different stages in storm hydrograph responses to ten rainfall events from October 2011 to March 2013. The water quality variables analysed included chemical oxygen demand (COD), nutrients (Kjeldahl nitrogen [Nk-N], ammonium [NH₄–N], nitrate [NO₃–N] and total dissolved phosphorus (TDP) and heavy metals (Zn and Cu).

Results and discussion

Urban areas had great impact on COD, with the highest median concentrations in ES and the lowest in Q. In ES, fertilizing lawns and gardens may have been responsible for its higher median NO₃–N concentrations. High concentrations of heavy metals were recorded in PB and Q, probably due to the piping of road runoff directly into the stream. Generally, higher pollutant concentrations were recorded in the first storm events after the summer drought due to the flushing of accumulated solutes and a lower dilution effect, with Nk-N and NH₄–N exceeding water quality standards. Over the wet season, increasing soil moisture favoured greater flow connectivity between runoff processes from pollutant sources and the stream network, leading to a higher proportion of samples exceeding pollution thresholds.

Conclusions

No direct relationship was identified between urban extent and water quality, possibly due to the overriding impact of different storm drainage systems and flow connectivities of different urban patterns. Hydrological regime, linked to seasonal changes, also exerted a major influence on the water quality dynamics. Information on the spatiotemporal dynamics of pollutants, linked to different urban patterns and storm drainage systems, should help enable urban planners to minimize the adverse impacts of urbanization on aquatic ecosystems.

     

Medicinal potential from in vivo and acclimatized plants of Cleome rosea

Methanolic extracts obtained from different organs of Cleome rosea, collected from its natural habitat and from in vitro-propagated plants, were submitted to in vitro biological assays. Inhibition of nitric oxide (NO) production by J774 macrophages and antioxidant effects by protecting the plasmid DNA from the SnCl(2)-induced damage were evaluated. Extracts from the stem of both origins and leaf of natural plants inhibited NO production. The plasmid DNA strand breaks induced by SnCl(2) were reduced by extracts from either leaf or stem of both sources. On the other hand, root extracts did not show any kind of effects on plasmid DNA, and presented significant toxic effects to J774 cells. The results showed that C. rosea presents medicinal potential and that the acclimatization process reduces the plant toxicity both to plasmid DNA and to J774 cells, suggesting the use of biotechnology tools to obtain elite plants as source of botanical material for pharmacological and phytochemical studies.     

Additions of landscape metrics improve predictions of occurrence of species distribution models

Species distribution models are used to aid our understanding of the processes driving the spatial patterns of species’ habitats. This approach has received criticism, however, largely because it neglects landscape metrics. We examined the relative impacts of landscape predictors on the accuracy of habitat models by constructing distribution models at regional scales incorporating environmental variables (climate, topography, vegetation, and soil types) and secondary species occurrence data, and using them to predict the occurrence of 36 species in 15 forest fragments where we conducted rapid surveys. We then selected six landscape predictors at the landscape scale and ran general linear models of species presence/absence with either a single scale predictor (the probabilities of occurrence of the distribution models or landscape variables) or multiple scale predictors (distribution models + one landscape variable). Our results indicated that distribution models alone had poor predictive abilities but were improved when landscape predictors were added; the species responses were not, however, similar to the multiple scale predictors. Our study thus highlights the importance of considering landscape metrics to generate more accurate habitat suitability models.