The effects of sediment deposits from Namibian diamond mines on intertidal and subtidal reefs and rock lobster populations

• 1. Extensive diamond mining occurs on land and in the sea on the west coasts of South Africa and Namibia, raising fears that diamond‐mining activities may impact commercial rock‐lobster fisheries and benthic communities. To explore this possibility, the effects of the diamond‐mining fines‐discharge on intertidal and subtidal rocky‐shore communities and on the population structure of the rock lobster Jasus lalandii were assessed at Elizabeth Bay.
• 2. Sampling over six years at sites covering a range of wave exposures compared impacted sites with comparable reference sites never exposed to the fines. Percentage cover and densities of benthic organisms were recorded on both intertidal and subtidal reefs. Rock‐lobster abundance was estimated from counts and catch‐per‐unit‐effort, and their length frequencies and sex ratios compared in impacted and reference areas.
• 3. The deposition of fines had no effect at wave‐exposed sites, but did impact intertidal and subtidal communities at sheltered localities where fines accumulated because wave action was insufficient to disperse them. Reductions of grazers, proliferation of algae and increased dominance by filter‐feeders were recorded at the impacted sites and persisted throughout the monitoring programme. Differences in community structure associated with different levels of wave exposure were, however, greater than those produced by depositing fines. The detected effects of fines‐deposits on the benthos were local and likely to be reversible after cessation of mining.
• 4. The fines‐deposit had no detectable effects on the sex‐ratio, size or abundance of rock lobsters, indicating that there is no conflict between the deposition of fines and the fishery for rock lobsters, although substantial inter‐site variability makes it difficult to regard the results as definitive.

Copyright © 2002 John Wiley & Sons, Ltd.     

Benthic foraminifera as proxies of marine influence in the Orosei marine caves,Sardinia, Italy

1. As a result of their location at the boundary between marine and continental domains, marine caves are affected by wide spatial and seasonal environmental changes. Only recently have benthic foraminifera been recognized as reliable indicators for the ecological zonation of these environments.
2. The present study is focused on two marine caves of the Orosei Gulf, Sardinia, Italy: Bue Marino and Bel Torrente. It investigates the spatial and seasonal variability of benthic foraminiferal assemblages relative to sediment grain size and water parameters (temperature, salinity, pH, and dissolved oxygen) collected during two campaigns in August 2014 and April 2015. The results from 2014 have been partially published.
3. Based on a comparison of the results of the two campaigns, the considerable reduction of foraminiferal abundance in Bel Torrente was deduced to occur because of the strong freshwater flows occurring during the rainy season; in Bue Marino, the less severe water flow allowed the identification of both living and dead foraminifera, although strongly reduced in number. These identifications allowed benthic foraminifera to be used to define the ecological zonation.
4. Entrance, confluence, and transitional ecozones were identified in Bue Marino cave on the basis of species abundance. The second ecozone, not recognized in 2014, was correlated with plant debris at the confluence of the two cave branches. The other two ecozones, which are characterized by the faunal shift from hyaline‐ to agglutinated‐prevalent assemblages, were attributed to the gradient of abiotic parameters detected from the outer to the inner portions of the cave. In both campaigns the same ecozones were recognized in terms of species composition, with exceptions being found to different extents as a result of seasonal variability.
5. As the distribution of foraminiferal ecozones is conditioned by a decreasing gradient of marine influence, long‐term monitoring may be regarded as a promising tool for future studies on sea‐level change.

     

Hydrophobic collapse in multidomain protein folding

We performed molecular dynamics simulations of the collapse of a two-domain protein, the BphC enzyme, into a globular structure to examine how water molecules mediate hydrophobic collapse of proteins. In the interdomain region, liquid water persists with a density 10 to 15% lower than in the bulk, even at small domain separations. Water depletion and hydrophobic collapse occur on a nanosecond time scale, which is two orders of magnitude slower than that found in the collapse of idealized paraffin-like plates. When the electrostatic protein-water forces are turned off, a dewetting transition occurs in the interdomain region and the collapse speeds up by more than an order of magnitude. When attractive van der Waals forces are turned off as well, the dewetting in the interdomain region is more profound, and the collapse is even faster.     

Feeding of yeast (Candida spp.) improves in vitro ruminal fermentation of ifbrous substrates

In vitro gas production technique (IVGPT) was used with the objective of determining the inclusion effect of live cel s of two strains of Candida yeast on in vitro ruminal fermentation of two ifbrous s...     

Evaluation of on-farm irrigation scheduling methods for potatoes

The neutron probe, infrared thermometry and crop water stress index (CWSI), and a computer-assisted irrigation scheduling method were evaluated in terms of their effect on tuber yield, tuber quality, and water use. The experiment was conducted during 1990 and 1991 near Othello, central Washington, using Russet Burbank potatoes grown in a silt loam soil. Irrigation treatments did not commence until after tuber initiation. In general, no differences in total number of tubers and total tuber yield resulted from the different scheduling methods. However, the canopy temperature method showed reduction in the yield of number one tubers in 1990. The least total irrigation water was applied during the growing season with the neutron probe method. Using CWSI values above 0.5 to 1.0 (scale 0 to 10) for two consecutive days as a threshold to schedule irrigations appeared to be adequate for potatoes grown in silt loam soils. However, shortcomings of infrared thermometry suggested that this method may not be practical for scheduling irrigation of potatoes.     

Oxygenated Polyketides from Plakinastrella mamillaris as a New Chemotype of PXR Agonists

Further purification of the apolar extracts of the sponge Plakinastrella mamillaris, afforded a new oxygenated polyketide named gracilioether K, together with the previously isolated gracilioethers E–G and gracilioethers I and J. The structure of the new compound has been elucidated by extensive NMR (¹H and ¹³C, COSY, HSQC, HMBC, and ROESY) and ESI-MS analysis. With the exception of gracilioether F, all compounds are endowed with potent pregnane-X-receptor (PXR) agonistic activity and therefore represent a new chemotype of potential anti-inflammatory leads. Docking calculations suggested theoretical binding modes of the identified compounds, compatible with an agonistic activity on hPXR, and clarified the molecular basis of their biological activities.     

Ampelographic and genetic characterisation of ancestral grapevine (Vitis vinifera L.) accessions present in the Umbria Region (Central Italy)

Summary

During an ongoing effort to recover and preserve local germplasm, 14 accessions of indigenous minor grapevine (Vitis vinifera L.) cultivars from the Umbria Region, Central Italy, were chosen because they had been neglected and were threatened with extinction. Their phenotypic and genetic characteristics were evaluated through an ampelographic study of their shoots, mature leaves, bunches, and berries and by genomic analysis using an international set of nine microsatellite (simple sequence repeat; SSR) markers (VVS2, VVMD5, VVMD7, VVMD27, VrZAG62, VrZAG79, VVMD25, VVMD28, and VVMD32). Comparisons of the SSR profiles of all 14 accessions with grapevine accessions in several databases permitted the identification of unique genotypes, as well as possible synonyms. Information on these older, neglected cultivars will help to reduce the genetic erosion of grapevine germplasm, improve conservation and possible recovery, and assist in the future production of new, distinctive wines.     

Successful treatment of small intestinal volvulus in two cats

BACKGROUND: Mesenteric volvulus describes a torsion of the small intestine around the mesenteric root, which can be partial or complete. In dogs, it is an uncommon condition, with German shepherd dogs showing a predisposition. Chronic mesenteric volvulus has also been described. In cats, previous reports have documented two cases of small intestinal volvulus, both diagnosed at necropsy, and a further case of volvulus of the colon in a patient that died after surgery. CLINICAL SIGNIFICANCE: This report describes two cats with mesenteric volvulus that were successfully treated. To the authors' knowledge, no reports of antemortem diagnosis or treatment of small intestinal volvulus in cats have previously been published. On the basis of the cases presented, it appears that the diagnosis of intestinal volvulus may be more difficult in cats than in dogs, but that the prognosis may not be as poor. Therefore, it is suggested that owners be encouraged to pursue surgery.     

Factors controlling Eucalyptus productivity: How water availability and stand structure alter production and carbon allocation

Wood production varies substantially with resource availability, and the variation in wood production can result from several mechanisms: increased photosynthesis, and changes in partitioning of photosynthesis to wood production, belowground flux, foliage production or respiration. An understanding of the mechanistic basis for patterns in wood production within a stand and across landscapes requires a complete annual carbon budget. We measured annual carbon flows to wood production, foliage production and total belowground carbon flux (the sum of root production, root respiration, and mycorrhizal production and respiration) from ages three to five years in clonal Eucalyptus plantations at four sites in Brazil to test if fertility, water availability and stand structure changed wood production and by what mechanism. We also quantified the patterns in light interception and the efficiency of light use to provide additional mechanistic insights into growth responses and to determine if light-use efficiency was related to changes in flux and partitioning.     

Pathogenicity evaluation of different Newcastle disease virus chimeras in 4-week-old chickens

The aim of this study was to evaluate the disease-inducing ability of four chimeric Newcastle disease viruses (NDV) by clinicopathological assessment. The infectious clones were previously generated by insertion of hemagglutinin–neuraminidase (HN) and/or fusion (F) genes from virulent strains (Turkey North Dakota and California 02) into a mesogenic strain (Anhinga) backbone. Groups of 4-week-old chickens were inoculated via eye drop instillation, clinical signs were monitored daily, and necropsies with collection of tissues were performed at 2, 5, 10, and 14 days post infection. Tissue sections were evaluated for histopathology and immunohistochemistry for NDV nucleoprotein. All viruses replicated successfully in the natural host, although viral recovery, seroconversion, and extent of immunohistochemical staining were greatest from birds infected with those viruses containing both F and HN genes from the same virulent virus. There was minimal to no increase in clinicopathologic disease due to infection with the chimeras compared to the recombinant backbone. However, all birds developed histological evidence of encephalitis. The results suggest that the inherent virulence of Turkey North Dakota and California 2002 strains is due to more than the simple presence of their F and HN genes.