Multiple roles of Arabidopsis VRN1 in vernalization and flowering time control

Arabidopsis VRN genes mediate vernalization, the process by which a long period of cold induces a mitotically stable state that leads to accelerated flowering during later development. VRN1 encodes a protein that binds DNA in vitro in a non-sequence-specific manner and functions in stable repression of the major target of the vernalization pathway, the floral repressor FLC. Overexpression of VRN1 reveals a vernalization-independent function for VRN1, mediated predominantly through the floral pathway integrator FT, and demonstrates that VRN1 requires vernalization-specific factors to target FLC.     

Diversity,Bioactivity Profiling and Untargeted Metabolomics of the Cultivable Gut Microbiota of Ciona intestinalis

It is widely accepted that the commensal gut microbiota contributes to the health and well-being of its host. The solitary tunicate Ciona intestinalis emerges as a model organism for studying host–microbe interactions taking place in the gut, however, the potential of its gut-associated microbiota for marine biodiscovery remains unexploited. In this study, we set out to investigate the diversity, chemical space, and pharmacological potential of the gut-associated microbiota of C. intestinalis collected from the Baltic and North Seas. In a culture-based approach, we isolated 61 bacterial and 40 fungal strains affiliated to 33 different microbial genera, indicating a rich and diverse gut microbiota dominated by Gammaproteobacteria. In vitro screening of the crude microbial extracts indicated their antibacterial (64% of extracts), anticancer (22%), and/or antifungal (11%) potential. Nine microbial crude extracts were prioritized for in-depth metabolome mining by a bioactivity- and chemical diversity-based selection procedure. UPLC-MS/MS-based metabolomics combining automated (feature-based molecular networking and in silico dereplication) and manual approaches significantly improved the annotation rates. A high chemical diversity was detected where peptides and polyketides were the predominant classes. Many compounds remained unknown, including two putatively novel lipopeptides produced by a Trichoderma sp. strain. This is the first study assessing the chemical and pharmacological profile of the cultivable gut microbiota of C. intestinalis.     

Effect of starvation on the growth and survival of post-larval abalone (Haliotis iris)

The starvation tolerance of post-larval abalone (Haliotis iris) was determined by examining post-larval growth and survival after various periods of starvation. Competent larvae (10 days old at 16°C) were induced to attach and metamorphose with 2 μM GABA. Post-larvae were either fed diatoms (Nitzschia longissima) or starved. In Experiment 1, post-larvae were starved immediately after metamorphosis for periods of 1, 2, 4, 8, 15, 20, 25 and 30 days. Starved post-larvae grew relatively well for several days after metamorphosis despite the absence of food (averages of 10.4 and 17.8 μm shell length (SL) per day after 8 days for two batches). Subsequent growth was minimal, averaging 1.7 and 0.7 μm day⁻¹ over 6–7 days for the two batches. There was no clear relationship between period of starvation and growth rate when fed. Mean daily growth rate over 3 weeks when fed ranged from 15–22 μm day⁻¹. However, the duration of starvation did have a significant effect on survival. Survival of post-larvae fed after 1–2 days of starvation was 90–100% after 3 weeks of feeding. Longer starvation periods gave progressively lower survival and post-larvae starved for 30 days all died within a week of being fed. In Experiment 2, post larvae were fed for 3 weeks after metamorphosis, then starved for 0, 3, 7, 14 or 21 days. Growth rates of starved post-larvae averaged only 5–6 μm day⁻¹ in the first week (vs. 30 μm day⁻¹ in controls), and later declined to zero. Growth resumed within a week following return to food, but the 14- and 21-day starvation treatments took 2 weeks to reach growth rates comparable to controls. The no-starvation controls and the 3- and 7-day starvation treatments all had >70% survival over 4 weeks after return to food. Survival in the 14- and 21-day starvation treatments was 15–20%, with almost all mortalities occurring in the first week after return to food. These data suggest that Haliotis iris post-larvae are relatively tolerant of starvation, so abalone farmers have a week or so to remedy food shortages before major post-larval mortality begins.     

Assessing the diet of the endangered Beale’s eyed turtle (Sacalia bealei) using faecal content and stable isotope analyses: Implications for conservation

1. Turtles from Asia are on the brink of extinction with 53% of species considered endangered or critically endangered. Unfortunately, the ecology of many threatened species remains largely unknown.
2. In this study, the diet of the endangered Beale’s eyed turtle (Sacalia bealei) was investigated using two methods, visual faecal content analysis and stable isotope analysis.
3. Results from both methods indicated that S. bealei is highly reliant on riparian resources, especially fruits and terrestrial insects. Stable isotope data indicated that terrestrial resources made up around half (47–53%) of all assimilated food resources. These findings suggest that S. bealei facilitates energy flow from riparian forests to stream ecosystems. Moreover, S. bealei is likely to be a seed disperser for riparian plants.
4. This study represents the first application of stable isotope methods to examine the diet of Asian freshwater turtles and their resource use. We stress the importance of similar studies to improve our understanding of remnant turtle populations before they disappear as a result of human activities.

     

CHALLENGES AND CAPACITY GAPS IN SMALLHOLDER ACCESS TO DIGITAL EXTENSION AND ADVISORY SERVICES IN KENYA AND UGANDA

● Seventy-eight percent of farmers accessed extension and advisory services from electronic sources dominated by radio. ● Low digital literacy and high cost of internet and digital devices were key barriers to digital extension and advisory services use. ● Farmers need information to make decisions, e.g., fertilizers, seeds or pesticides to use. ● Integrating digital and face-to-face methods can enhance inclusive scaling of extension activities. An assessment of the challenges and capacity gaps in smallholder access to digital extension and advisory services (EAS) was made by surveying 197 female and 239 male farmers in Kenya and Uganda. Non-digital extension approaches remain dominant but at least 78% of farmers accessed EAS from electronic sources dominated by radio. This is attributed to the fact that ownership of radios was more widespread than of other digital devices. Challenges that particularly limit the use of digital services included low digital literacy and prohibitive cost of internet and mobile devices. Female and elderly farmers were more likely to report these challenges than their counterparts. Logistic regression model results show that ownership of digital devices, participation in post-production activities, and access to extension were enablers of digital EAS use. Farmers mentioned gaps in obtaining information on crop pest/disease diagnosis and management, fertilizer application, pesticide safety and quality seed. Given the diversity in smallholder technological capabilities and information needs, the recommendations made include integration of digital communication within multimode advisory services that use different but linked communication channels, continued farmer digital innovation capacity enhancement, and participatory design approaches that deliver relevant and actionable information for inclusive scaling of extension activities.     

Assessment of Chemical and Physico-Chemical Properties of Cyanobacterial Lipids for Biodiesel Production

Five non-toxin producing cyanobacterial isolates from the genera Synechococcus, Trichormus, Microcystis, Leptolyngbya and Chlorogloea were examined in terms of quantity and quality as lipid feedstock for biofuel production. Under the conditions used in this study, the biomass productivity ranged from 3.7 to 52.7 mg·L⁻¹·day⁻¹ in relation to dry biomass, while the lipid productivity varied between 0.8 and 14.2 mg·L⁻¹·day⁻¹. All cyanobacterial strains evaluated yielded lipids with similar fatty acid composition to those present in the seed oils successfully used for biodiesel synthesis. However, by combining biomass and lipid productivity parameters, the greatest potential was found for Synechococcus sp. PCC7942, M. aeruginosa NPCD-1 and Trichormus sp. CENA77. The chosen lipid samples were further characterized using Fourier Transform Infrared spectroscopy (FTIR), viscosity and thermogravimetry and used as lipid feedstock for biodiesel synthesis by heterogeneous catalysis.