Signatures of adaptation to obligate biotrophy in the Hyaloperonospora arabidopsidis genome

Many oomycete and fungal plant pathogens are obligate biotrophs, which extract nutrients only from living plant tissue and cannot grow apart from their hosts. Although these pathogens cause substantial crop losses, little is known about the molecular basis or evolution of obligate biotrophy. Here, we report the genome sequence of the oomycete Hyaloperonospora arabidopsidis (Hpa), an obligate biotroph and natural pathogen of Arabidopsis thaliana. In comparison with genomes of related, hemibiotrophic Phytophthora species, the Hpa genome exhibits dramatic reductions in genes encoding (i) RXLR effectors and other secreted pathogenicity proteins, (ii) enzymes for assimilation of inorganic nitrogen and sulfur, and (iii) proteins associated with zoospore formation and motility. These attributes comprise a genomic signature of evolution toward obligate biotrophy.     

Comparison of harvested rate and nacre deposition parameters between cultured pearls issued from initial graft and second nucleus insertion in P. margaritifera

Cultured pearls produced with Pinctada margaritifera, using the surgreffe method (implantation of a second nucleus following pearl harvest) were studied for the first time to: (1) examine family effect on nacre thickness, nacre weight and nacre deposition speed and (2) compare variation in these three traits with that obtained from the cultured pearls previously harvested after the corresponding initial grafts. A surgreffe experiment using 783 recipient oysters was realized in Rangiroa atoll (French Polynesia). After 24 months of culture, 389 cultured pearls were harvested. Significant donor family effect was found for the harvested pearl rate from surgreffe (P = 0.046). Highly significant donor family effect was recorded for nacre thickness (P = 0.004). Very highly significant donor family effects were recorded for nacre weight and nacre deposition speed (P < 0.0001). Comparison between surgreffe and initial graft showed: (1) no significant effect for the average cultured pearl rate harvested (P = 0.052) and average cultured pearl nacre deposition speed (P = 0.622) and (2) very highly significant differences (P < 0.0001) for the average cultured pearl nacre thickness and nacre weight. This study highlighted three major implications for pearl industry management: (1) donor family effect was maintained from initial graft to surgreffe, for nacre thickness, weight and deposition speed, (2) the persistence of the pearl sac metabolic activity over three years of culture and (3) the relation between harvested pearl rate and the size of the nucleus inserted in the pearl sac.     

Protein Composition of Seminal Plasma in Fractionated Stallion Ejaculates

Seminal plasma (SP) contains several types of compounds derived from the epididymides and accessory glands. The aim of this study was to examine the protein composition of different ejaculate fractions. Trial I: fractionated ejaculates were collected from two normal and two subfertile stallions. Samples containing pre‐sperm fluid and the first sperm‐rich jets (HIGH‐1), the main sperm‐rich portion (HIGH‐2), the jets with low sperm concentrations (LOW), and a combined whole‐ejaculate (WE) sample was centrifuged, and the SP was filtered and frozen. A part of each SP sample was stored (5°C, 24 h) with spermatozoa from HIGH‐2 and skim milk extender. Sperm motility was evaluated after storage in extender mixed with the stallion’s own SP or SP from one of the other stallions (sperm from a normal stallion stored in SP from a subfertile stallion and vice versa). Protein composition was analysed using reverse‐phase liquid chromatography (RP‐HPLC), N‐terminal sequencing and mass spectrometry. The area‐under‐the‐curve (AUC) was used for quantitative comparison of proteins within fractions. Trial II: semen samples were collected from seven stallions. Fractions with the highest (HIGH) and lowest (LOW) sperm concentrations and WE samples were examined using SDS‐PAGE and densitometry. No significant differences emerged between fractions in the AUC‐values of the Horse Seminal Protein‐1 (HSP‐1) and HSP‐2 peaks, or the peak containing HSP‐3 and HSP‐4 (HSP‐3/4). Levels of HSP‐1, HSP‐2 and HSP‐3/4 were not significantly correlated with total sperm motility, progressive sperm motility or average path velocity after storage. Significant differences between ejaculate fractions in the amount of different protein groups present in SP were not found in Trial I; but in Trial II, the proteins in the 60–70 kDa range were more abundant in LOW than in HIGH and WE, indicating that this band contained proteins derived mainly from the seminal vesicles, which produce most of the SP in LOW.     

Fluxes of CO2 above a plantation of Eucalyptus in southeast Brazil

Eddy-covariance measurements of net ecosystem exchange of CO₂ (NEE) and estimates of gross ecosystem productivity (GEP) and ecosystem respiration (R_E) were obtained in a 2-4 year old Eucalyptus plantation during two years with very different winter rainfall. In the first (drier) year the annual NEE, GEP and R_E were lower than the sums in the second (normal) year, and conversely the total respiratory costs of assimilated carbon were higher in the dry year than in the normal year.Although the net primary production (NPP) in the first year was 23% lower than that of the second year, the decrease in the carbon use efficiency (CUE = NPP/GEP) was 11% and autotrophic respiration utilized more resources in the first, dry year than in the second, normal year. The time variations in NEE were followed by NPP, because in these young Eucalyptus plantations NEE is very largely dominated by NPP, and heterotrophic respiration plays only a relatively minor role.During the dry season a pronounced hysteresis was observed in the relationship between NEE and photosynthetically active radiation, and NEE fluxes were inversely proportional to humidity saturation deficit values greater than 0.8 kPa. Nighttime fluxes of CO₂ during calm conditions when the friction velocity (u_*) was below the threshold (0.25 m s⁻¹) were estimated based on a Q₁₀ temperature-dependence relationship adjusted separately for different classes of soil moisture content, which regulated the temperature sensitivity of ecosystem respiration.     

Neural networks in climate spatialization and their application in the agricultural zoning of climate risk for sunflower in different sowing dates

ABSTRACT

Sunflower is a species that is sensitive to local climate conditions. However, studies that use artificial neural networks (ANNs) to evaluate this influence and create tools such as agricultural zoning of climate risk (ZARC) have not been conducted for this species. Due to the importance of sunflower as a human food source and for biodiesel production, and also the necessity of conducting research to evaluate the suitability of this oleaginous species under different climatic conditions. Thus, we seek to construct a ZARC for sunflower in Brazil simulating sowing on different dates and using meteorological elements spatialized by ANNs. Climate data were used: air temperature (T), rainfall (P), relative air humidity (UR), solar radiation (MJ_m^?2_d^?1) and wind velocity (U²). Climatic regions considered suitable for the cultivation of sunflower had average annual values for T between 20 and 28°C, P between 500 and 1.500 mm per cycle, and soil water deficit (DEF) below 140 mm per cycle. A neural network is an efficient tool that can be used in spatialization of climate variables quickly and accurately. Sunflower sowing in the spring and summer are the ones that provide the largest suitable areas in southeastern Brazil, with 58.13 and 64.36% of suitable areas, respectively.     

The use of microsatellite polymorphisms to characterise and compare genetic variability in Avena strigosa and A. barbata

Microsatellite (SSR) polymorphism was assessed across 90 diploid Avena strigosa Schreb. and tetraploid Avena barbata Pott ex Link accessions obtained from the USDA-ARS National Small Grains Collection using 105 genomic SSRs. Eleven polymorphic SSRs that detected 69 different alleles were identified and used to genotype the 90 accessions, which were chosen from a larger set of 385 accessions based on geographical source-diversity and variable reaction responses to five Australian pathotypes of the crown rust pathogen Puccinia coronata Corda f. sp. avenae Eriks. Eight diploid and eight tetraploid clades were identified among the 90 accessions. Diploid accessions displayed the lowest genetic diversity, with all accessions being at least 86 % similar, and included accessions from countries in the Americas such as Canada, USA, Argentina, Uruguay and Brazil, and European accessions from France, Romania and Poland. Although both species formed distinct clusters in the dendrogram, a few instances of diploids showing high similarity with tetraploids and vice versa were observed. An AMOVA analysis revealed 86 % of the total genetic variation to be distributed within the two oat species, while between-species differences accounted for only 14 %. Heterozygosity (H) index values of 0.32 and 0.40 were obtained for diploids and tetraploids respectively. Our study effectively differentiated A. strigosa and A. barbata, and identified 11 SSRs suitable for future characterisation of accessions of the two species.     

Fish larvae dynamics in temperate estuaries: A review on processes,patterns and factors that determine recruitment

Early life stages of fish (eggs and larvae) are particularly vulnerable with mortality rates of up to 99% recorded for a large number of species. High mortality rates result from the limited swimming ability of larvae preventing them from escaping sub-optimal environmental conditions, predators or low prey density areas. In this context, estuaries are key nursery areas for larval and juvenile fish. Estuarine habitats offer environmental conditions favourable to the survival and growth of early stages, through abundant good-quality prey and protection from predators. A vast literature on larvae occurring in temperate estuaries exists, but an overall perspective is lacking. The occurrence of fish larvae in temperate estuaries depends on several factors. First, the choice of spawning time and location is primordial, as they have evolved to optimise the entry and the retention of larvae in the estuary as well as the conditions experienced by young stages. Secondly, larval growth and survival depend on key environmental factors (e.g. salinity, water temperature, freshwater inputs, turbidity and dissolved oxygen concentration). Knowledge of the larval dynamics in temperate estuaries is scarce for some topics and biased towards some species or geographical areas. The main goal of the present literature review is to synthesise existing knowledge regarding spawning timing and location and larval ecology for fish species occurring in coasts and estuaries, identifying the main patterns, consensus or conflicting hypotheses and highlighting major gaps. Research needs and future perspectives were outlined.     

Effects of some lignans and neolignans on the development and excretion of Rhodnius prolixus.

The effects of six lignans and neolignans as inhibitors of ecdysis and on the water balance in fourth-instar larvae of Rhodnius prolixus were studied by oral, topical and continuous contact treatments. The main results may be summarised as follows: (i) burchellin, pinoresinol, sesamin, licarin A and nordihydroguaiaretic acid (NDGA) did not cause feeding inhibition at doses of 100 micrograms/ml blood; podophyllotoxin had no antifeedant effect but caused a high moulting inhibition and significant toxicity when applied either orally or topically; (ii) the highest ecdysis inhibitory effects were observed with pinoresinol and NDGA when applied orally at a dose of 100 micrograms/ml (58% and 50% of moulting inhibition, respectively); burchellin inhibited 30% of the moulting at this concentration; (iii) by topical treatment none of the compounds presented any influence on the moulting cycle; and (iv) podophyllotoxin and burchellin significantly reduced the excretion of the insect in 24 h; the other compounds had no effect on excretion. The implications of these findings in relation to the pertinent biological events in R. prolixus are discussed.     

Energy to protein ratios in supplements for grazing heifers in the rainy season

Tropical Animal Health and Production - This study evaluated the effect of energy and protein supplementation on the nutritional characteristics, ingestive behavior, and productive performance in...