Dynamic models applied to giant barnacle culture

In this study, a dynamic model is applied to giant barnacle (Austromegabalanus psittacus) spat collection from artificial substrates located in the wild. Semi-industrial culture of the giant barnacle, A. psittacus “picoroco” in southern Chile is an interesting option for aquaculture diversification. The model establishes relationships between variables and carries out simulations to determine their effects on spat provision. The dynamic hypothesis proposes that the number of giant barnacle spat obtained from the wild is influenced by competent larval abundance (cyprids) over time, substrate availability and mortality after larval settlement. In the conceptual model, 15 variables were selected and related, establishing the polarities of each causal relationship and of each feedback loop. The Stock & Flow diagram was undertaken using STELLA 9.0 simulation software. Simulation tests were carried out to establish the consistency of the model using the empirical background obtained from semi-industrial cultures in southern Chile. The model establishes relative quantity of competent larvae, substrate area and the number of spat, as key variables. Synchrony between level of cyprid abundance and location of artificial substrates in the water is critical to achieve maximum collector efficiency. A difference of less than 1 week out of synchronization produces significant losses (60–70%) in spat production. When the deployment of collectors and maximum quantity of competent larvae are synchronized, sensitivity analysis establishes an increase of up to 49.4% in the number of spat, as a result of the collector area released by spat early mortality. The application of dynamic models in aquaculture constitutes a useful tool for optimizing the process. The model proposed enables us to understand the processes associated with obtaining seed from the environment and can be applied to other similar processes, such as mytilid cultures.     

Marine Derived Hamacanthins as Lead for the Development of Novel PDGFRβ Protein Kinase Inhibitors

In this study, we report on pyrazin-2(1H)-ones as lead for the development of potent adenosine triphosphate (ATP) competitive protein kinase inhibitors with implications as anti-cancer drugs. Initially, we identified the pyrazin-2(1H)-one scaffold from hamacanthins (deep sea marine sponge alkaloids) by Molecular Modeling studies as core binding motif in the ATP pocket of receptor tyrosine kinases (RTK), which are validated drug targets for the treatment of various neoplastic diseases. Structure-based design studies on a human RTK member PDGFR (platelet-derived growth factor receptor) suggested a straight forward lead optimization strategy. Accordingly, we focused on a Medicinal Chemistry project to develop pyrazin-2(1H)-ones as optimized PDGFR binders. In order to reveal Structure-Activity-Relationships (SAR), we established a flexible synthetic route via microwave mediated ring closure to asymmetric 3,5-substituted pyrazin-2(1H)-ones and produced a set of novel compounds. Herein, we identified highly potent PDGFR binders with IC₅₀ values in an enzymatic assay below µM range, and possessing significant activity against PDGFR dependent cancer cells. Thus, marine hamacanthin-derived pyrazin-2(1H)-ones showing interesting properties as lead for their further development towards potent PDGFR-inhibitors.     

Increased spawning activity of female Nile tilapia (Oreochromis niloticus) (L.) after stocking density and photoperiod manipulation

This study was conducted to evaluate the effects of stocking density and photoperiod in increasing the reproductive performance of Oreochromis niloticus. In experiment 1, a change in stocking density (from 47.7 to 6.8 kg m^?3) was performed, with groups of 48 females moved to single compartments. In experiment 2, 36 females experienced a 6L:18D photoperiod for 21 or 28 days (stocking density: 31.3 kg m^?3) before being placed in individual compartments (stocking density of 6.9 kg m^?3, 12L:12D photoperiod). The spawning rates in experiment 1 (32.2%) and in experiment 2 (21 days: 65.2%, 28 days: 36.1%) were significantly higher than those in the control (17.7%). On the other hand, hatching and swim‐up fry rates were significantly lower in experiment 2 – 21 days (41.3%, 40.4%) but not in experiment 1 (64.0%, 56.3%) compared with the control (67.0%, 62.3%). The spawning rate in experiment 2 – 21‐day treatment group was the highest, while the number of eggs collected per female was significantly lower than that in the control. In experiments 1 (20.8%) and 2 (21 days: 44.4%, 28 days: 19.4%), the daily spawning rates were the highest 3 days after maintaining females in single compartments. The current experiment demonstrates how specific stocking density changes can be used to induce higher spawning rates in Nile tilapia.     

How much space does a seedling need?

A method is described to identify canopy trees which significantly affect regeneration at a given point, estimate the effect of these trees on the growth and survival of seedlings, and determine the maximum density of the canopy trees compatible with successful regeneration. All this information is obtained using point sampling done with several basal area factors from the same point. An example of the method's application is provided.     

The Genus <Emphasis Type="Italic">Fragaria </Emphasis>in Croatia

Only three native species of genus Fragaria (F. moschata, F. vesca and F. viridis) are recorded in three regions of Croatia. These species as well as many of their hybrids, are, or once were, cultivated for their edible fruits. The majority of cultivated strawberries in Europe belong to garden strawberries F. x ananassa (hybrids of F. chiloensis and F. virginiana). The most expanded wild strawberry species in Croatia is a woodland strawberry (F. vesca) whose berries are gathered seasonally as wild edible fruits. They often contain higher amount of nutrients and bioactive compounds in comparison to cultivated varieties. The research on the genus Fragaria species distribution in Croatia has not been carried out, and so is the case with many others wild growing fruit species in Croatia. By summing up a number of individual citations and observations, it is possible to get a perspective regarding the current state of their distribution.     

Development of a variable number of tandem repeats typing scheme for the bacterial rice pathogen Xanthomonas oryzae pv. oryzicola

Xanthomonas oryzae pv. oryzicola is an important bacterial pathogen responsible for outbreaks of bacterial leaf streak (BLS) on rice, mostly occurring in Asia and parts of Africa. To better monitor epidemics and assess population structures, efficient tools that allow the precise identification and diagnosis of pathogenic populations are needed. In this study, we explored variable numbers of tandem repeats (VNTR) as a fast, reliable, and cost-effective molecular typing tool. Screening of three X. oryzae pv. oryzicola genome sequences (Philippine strain BLS256, Chinese strain GX01, and Malian strain MAI10) predicted 28 candidate VNTR loci. Primer pairs for polymerase chain reaction (PCR) amplification of all 28 loci were designed and applied to a panel of 20 X. oryzae pv. oryzicola strains originating from Asia and Africa. Sequencing of PCR amplicons revealed 25 robust and polymorphic VNTR loci that are shared among Asian and African X. oryzae pv. oryzicola strains. A dendrogram constructed from 25 VNTR loci indicated that most Asian strains are clearly discriminated from African strains. However, in agreement with previous reports, one strain from Mali is related to Asian strains, pointing to a possible introduction of Asian strains to the African continent. The new VNTR-based tool described here is useful for studies of population structures and epidemiological monitoring of X. oryzae pv. oryzicola.