A principal components analysis of some biochemical activities in a climosequence of soils

Ten biochemical properties, comprising oxygen uptakes with and without added glucose, dehydrogenase, invertase, amylase. protease, urease, phosphatase, and sulphatase activities, and the invertase/amylase ratio, were measured in a climosequence of nine soils in tussock grasslands in New Zealand. Generally, these properties had no consistent distribution pattern. Some activities, however, were greater in the more developed soils of the sequence while others were lower in the “alpine” soil.The influence of 10 environmental and soil factors on the activities was assessed by principal components analysis. Nearly 90% of the total variance could be accounted for by only three components. The amounts of variance in individual activities accounted for by these components differed, but were usually high. The percentage of organic C, soil moisture regime, and mean annual temperature accounted for much of the variance in all three components; total N was unimportant. As a result of the principal components analysis, the soils could be grouped biochemically into arrangements that were consistent with either the pedological classification of the soils or the influence of a dominant environmental factor. The usefulness of principal components analysis for other ecological studies of soil biochemical properties is indicated.     

Connecting phenological predictions with population growth rates for mountain pine beetle,an outbreak insect

It is expected that a significant impact of global warming will be disruption of phenology as environmental cues become disassociated from their selective impacts. However there are few, if any, models directly connecting phenology with population growth rates. In this paper we discuss connecting a distributional model describing mountain pine beetle phenology with a model of population success measured using annual growth rates derived from aerially detected counts of infested trees. This model bridges the gap between phenology predictions and population viability/growth rates for mountain pine beetle. The model is parameterized and compared with 8 years of data from a recent outbreak in central Idaho, and is driven using measured tree phloem temperatures from north and south bole aspects and cumulative forest area impacted. A model driven by observed south-side phloem temperatures and that includes a correction for forest area previously infested and killed is most predictive and generates realistic parameter values of mountain pine beetle fecundity and population growth. Given that observed phloem temperatures are not always available, we explore a variety of methods for using daily maximum and minimum ambient temperatures in model predictions.     

Modelling multi-species response to landscape dynamics: mosaic cycles support urban biodiversity

The importance of the spatial as well as the temporal structure of habitat patches for urban biodiversity has been recognised, but rarely quantified. In dynamic environments the rate of habitat destruction and recreation (i.e. the landscape turnover rate), the minimum amount of potential habitat, its spatial configuration as well as the environmental conditions determining habitat quality are crucial factors for species occurrence. We analysed species responses to environmental parameters and to the spatio-temporal configuration of urban brownfield habitats in a multi-species approach (37 plant and 43 insect species). Species presence/absence data and soil parameters, site age, vegetation structure and landscape context were recorded by random stratified sampling at 133 study plots in industrial areas in the city of Bremen (Germany). Based on the field data, we predicted species occurrences by species distribution models using a multi-model inference approach. Predicted species communities were driven by successional age both at the scale of a single building lot and at the landscape scale. Minimum average succession time of brownfield habitats required to support all and especially regionally rare species depended on the proportion of available open space; the larger the potential habitat area the faster the acceptable turnover. Most plant, grasshopper, and leafhopper species modelled could be maintained at an intermediate turnover rate (mean age of 10–15 years) and a proportion of open sites of at least 40%. Our modelling approach provides the opportunity of inferring optimal spatio-temporal landscape configurations for urban conservation management from patch scale species-environment relationships. The results indicate that urban planning should incorporate land use dynamics into the management of urban biodiversity. Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

Washing agents from sewage sludge: efficiency of Cd removal from highly contaminated soils and effect on soil organic balance

Purpose

To compare Cd removal from different soils with three washing agents recovered from sewage sludge (dissolved organic matter (DOM), soluble humic-like substances (HLS), soluble humic substances (SHS)). Also, to investigate how washing with these agents changes soil organic-matter composition (OM).

Materials and methods

Sandy clay loam (S1) and clay (S2) highly contaminated with Cd (300 mg kg^?1) were washed with DOM, HLS, or SHS solutions at various pHs, and with various washing times and washing modes (single or double). Cd distribution and OM composition were determined (including content of humic substances (HS), fulvic fraction (FF), labile humic acids (L-HA), and stable humic acids (S-HA)).

Results and discussion

Cd removal proceeded with pseudo-second-order kinetics. Equilibrium was reached in 30 min (S1) and 60 min (S2). DOM, HLS, and SHS removed 75–82% of Cd from S1, and 80–87% from S2. The most mobile fraction of Cd was removed after one wash. S2 retained more OM, including HS, than S1. Although washing did not change the HA/FF ratio in most variants, washing with DOM and HLS increased the percentage of L-HA in both soils. Washing with SHS increased S-HA content in both soils, but the percent content of S-HA was similar to that in the unwashed soil.

Conclusions

DOM, HLS, and SHS derived from sewage sludge can effectively remediate clay and sandy clay soils highly contaminated with Cd. Washing with an SHS solution can increase the content of the most stable carbon forms (HA), which is beneficial for carbon sequestration in remediated soils.

     

Spatial distribution pattern and physical – biological interactions in the larval notothenioid fish assemblages from the Bransfield Strait and adjacent waters

The Bransfield Strait and adjacent waters represent one of the most important areas of larval retention off the Antarctic Peninsula. The species composition of larval fish assemblages has been described in detail in previous surveys carried out in the area, but the role of environmental parameters influencing the spatial distribution of early life stages was poorly known. By applying generalized additive models and multivariate analyses, we evaluated the role of environmental variables in shaping the small‐scale distribution of larval fish and investigated the spatial structure of the larval assemblage. It consisted of a few dominant notothenioid species, such as Champsocephalus gunnari, Lepidonotothen squamifrons, Lepidonotothen larseni, Pleuragramma antarctica and Trematomus scotti, and several other rarely caught species. Sea water temperature, salinity and sampling depth were the most important factors determining the spatial distribution of fish with different relative contributions, together explaining more than 80% of total deviance observed. Species richness was mostly affected by salinity, probably due to the narrow range of salinity preference by the species. Cluster analysis of abundance and presence data identified six and five distinct groups, respectively, each of them with substantial contributions of single or rarely two species. Differences in reproductive strategies of adult populations and spatial distribution of early life stages driven by different larval behaviour in response to environmental factors contribute to maintaining a well‐structured larval fish assemblage, ensuring spatial and food niche partitioning.     

Genetic and morphological characterization of Mawsonascaris vulvolacinata n. sp. (Nematoda: Anisakidae) and associated histopathology in a wild caught cowtail stingray,Pastinachus ater

There are limited reports of infectious agents affecting Australian cowtail stingrays. In the present study, a new species of ascaridoid nematode belonging to the genus Mawsonascaris is described. The most distinct characteristic features were observed in females (the presence of a polar spine in the eggs and a flap‐like projection in the vulval area). An identification key for Mawsonascaris spp. is provided. Additionally, internal transcribed spacers (ITS) sequences were obtained for the new species. Alignment of the ITS sequence of the specimens in the present study with those deposited in GenBank showed that there exists no other highly similar sequence. Phylogenetic analyses resulted in a distinct grouping of our specimens supporting morphological distinction from previously described Mawsonascaris spp. Histology was used to investigate the pathology caused by the infection. Necrosis, inflammation and fibrosis were evident at the border of the nodules formed by parasite. A large number of parasites were present in muscularis mucosae and submucosa but not in the muscularis of the stomach. The parasites were associated with an increased inflammatory response, which was also found in the muscularis mucosae and submucosa. Similar pathology has been described in elasmobranchs infected by cestodes, although with more severe lesions.     

Administration of recombinant parasite beta-tubulin to goldfish (Carassius auratus L.) confers partial protection against challenge infection with Trypanosoma danilewskyi Laveran and Mesnil, 1904

The infection of carp and other cyprinid fish with Trypanosoma danilewskyi was reported to cause significant morbidity and mortality in aquaculture. Tubulin is a component of parasite excretory/secretory (ES) products recognized by antibodies present in the serum of recovered hosts. To assess the role of parasite tubulin in the induction of a protective immune response in the goldfish, recombinant T. danilewskyi beta-tubulin was produced in Escherichia coli and used to immunize goldfish against challenge with live parasites. Affinity purified rabbit anti-recombinant tubulin IgG bound to both surface and internal structures of trypanosomes, and when added to parasite cultures caused a dose-dependent inhibition of their growth in vitro. Immunization of goldfish i.p. with either 40 microg or 80 microg of endotoxin-free beta-tubulin+Freund's complete adjuvant (FCA) caused a significant decrease in parasitemia during the establishment phase of the infection (days 3 and 7) and increased the time required to reach the maximal mean number of parasites compared to non-immunized sham-injected control fish. The serum from immune fish contained antibodies that recognized trypanosomes as determined by confocal immunofluorescence microscopy and specific antibodies that recognized recombinant tubulin as measured by ELISA. Thus, the immunization of goldfish with recombinant parasite beta-tubulin conferred partial antibody-mediated protection against a challenge infection with live trypanosomes. This is a first report that parasite tubulin is immunogenic in poikilothermic vertebrates.     

A systematic review-meta-analysis of chilling interventions and a meta-regression of various processing interventions for Salmonella contamination of chicken

Context

The results of individual studies investigating the efficacy of chilling and other processing interventions on Salmonella prevalence or concentration in broiler chicken carcasses are inconsistent or contradictory.

Objective

Determine efficacy of chilling on reducing Salmonella prevalence or concentration on broiler carcasses using systematic review-meta-analysis, and explore sources of heterogeneity among studies investigating various processing interventions through meta-regression.

Data sources

A comprehensive search included electronic search in six databases, manual search of reference lists of topic-related articles, and consultation with five topic experts to assure that all relevant intervention research was identified.

Study inclusion

Primary intervention research, published in English, encompassing control, challenge, cohort, or before-and-after study designs investigating the efficacy of any chilling or other processing interventions on Salmonella prevalence or concentration in broiler chicken carcasses.

Risk of bias assessment and data extraction

Data pertaining to study methodology and reported results, chilling or other processing intervention parameters, populations sampled and outcomes measured were assessed for methodological soundness and extracted by two independent reviewers using pretested checklists.

Results

Random-effects meta-analyses of immersion chilling with chlorine (n = 9 trials), acetic acid (n = 16) and potable water (n = 13) trended towards reductions in the odds or log₁₀ CFU/ml of Salmonella. Significant heterogeneity (P-value ≤ 0.1 and I² > 25%) precluded the reporting of pooled summary effect estimates. Meta-regression of all processing interventions indicated that serotype, disinfectant type and treatment time and pH were significantly associated with studies reporting reductions in concentration while study design, population sampled, study setting, publication date, intervention and disinfectant type, and treatment pH were significantly associated with studies reporting reductions in prevalence. Methodological and reporting flaws were consistently observed in relevant intervention research as well as a lack of studies conducted under commercial conditions and using Salmonella concentration outcomes.

Conclusions

Chilling may be effective at reducing Salmonella concentration and prevalence, but significant heterogeneity precluded reporting of pooled summary effect estimates for many chilling interventions. Investigations into potential sources of heterogeneity among all processing interventions found that the use of other chemical disinfectants, such as organic acids and surfactants might result in larger reductions in Salmonella contamination than more commonly utilized oxidizing agents like chlorine.     

Effects of sensor spatial resolution on landscape structure parameters

We examined the effects of increasing grain size from 20 m to 1100 m on landscape parameters characterizing spatial structure in the northern Wisconsin lake district. We examined whether structural parameters remain relatively constant over this range and whether aggregation algorithms permit extrapolation within this range. Images from three different satellite sensors were employed in this study: (1) the SPOT multispectral high resolution visible (HRV), (2) the Landsat Thematic Mapper (TM), and (3) the NOAA Advanced Very High Resolution Radiometer (AVHRR). Each scene was classified as patches of water in a matrix of land. Spatial structure was quantified using several landscape parameters: percent water, number of lakes (patches), average lake area and perimeter, fractal dimension, and three measures of texture (homogeneity, contrast, and entropy). Results indicate that most measures were sensitive to changes in grain size. As grain size increased from 20 m using HRV image data to 1100 m (AVHRR), the percent water and the number of lakes decreased while the average lake area, perimeter, the fractal dimension, and contrast increased. The other two texture measures were relatively invariant with grain size. Although examination of texture at various angles of adjacency was performed to investigate features which vary systematically with angle, the angle did not have an important effect on the texture parameter values. An aggregation algorithm was used to simulate additional grain sizes. Grain was increased successively by a factor of two from 20 m (the HRV image) to 1280 m. We then calculated landscape parameter values at each grain size. Extrapolated values closely approximated the actual sensor values. Because the grain size has an important effect on most landscape parameters, the choice of satellite sensor must be appropriate for the research question asked. Interpolation between the grain sizes of different satellite sensors is possible with an approach involving aggregation of pixels.     

Vector‐borne disease and its relationship to hematologic abnormalities and microalbuminuria in retired racing and show‐bred greyhounds

BackgroundReference intervals for platelets and white blood cell (WBCs) counts are lower in greyhounds than other breeds. Proteinuria is common. Vector‐borne diseases (VBD) cause thrombocytopenia, leukopenia, and proteinuria. Racing greyhounds are commonly exposed to vectors that carry multiple organisms capable of chronically infecting clinically healthy dogs.Hypothesis/ObjectivesVector‐borne disease prevalence is higher in retired racing greyhounds than in show‐bred greyhounds. Occult infection contributes to breed‐related laboratory abnormalities.AnimalsThirty National Greyhound Association (NGA) retired racing and 28 American Kennel Club (AKC) show‐bred greyhounds.MethodsPeripheral blood was tested for Anaplasma, Babesia, Bartonella, Ehrlichia, hemotropic Mycoplasma, and Rickettsia species using PCR. Antibodies to Anaplasma, Babesia, Bartonella, Ehrlichia, and Rickettsia species and Borrelia burgdorferi were detected using immunofluorescence and ELISA assays. Complete blood counts, semiquantitative platelet estimates, and microalbuminuria concentration were determined.ResultsSeven of 30 NGA and 1/28 AKC greyhounds tested positive for ≥1 VBD (P = .05). More positive tests were documented in NGA (10/630) than in AKC dogs (1/588; P = .02). Exposure to Bartonella species (3/30), Babesia vogeli (2/30), Ehrlichia canis (1/30), and infection with Mycoplasma hemocanis (3/30) occurred in NGA dogs. Platelet counts or estimates were >170 000/μL. White blood cell counts <4000/μL (4/28 AKC; 5/30 NGA, P > .99; 1/8 VBD positive; 8/51 VBD negative, P = .99) and microalbuminuria (10/21 AKC; 5/26 NGA, P = .06; 1/8 VBD positive; 14/25 VBD negative, P = .41) were not associated with VBD.Conclusions and Clinical ImportanceThe prevalence of thrombocytopenia and B. vogeli exposure was lower than previously documented. Larger studies investigating the health impact of multiple VBD organisms are warranted.