Universal PCR primers for ribosomal protein gene introns of fish

Human ribosomal protein (RP) gene sequences with respect to intron/exon structures and corresponding cDNA or genomic data of fish species were obtained from the GenBank database. Based on conserved exon sequences, 128 primer pairs for 41 genes were designed for exon-primed intron-crossing (EPIC) polymerase chain reaction (PCR). In reference to the draft genome sequences of the Pacific bluefin tuna (Thunnus orientalis), 12 primer pairs expected to amplify introns of the bluefin tuna with lengths of 500–1000 bp were selected and applied to six distantly related fish species belonging to the Orders Clupeiformes, Tetraodontiformes, Pleuronectiformes, Perciformes, Scorpaeniformes, and Anguilliformes. PCR amplification was observed for at least four species in each primer pair, and all fragments were larger than those expected for intronless amplification. Single fragment amplification was observed for at least seven primer pairs per species. Fragment sizes of the bluefin tuna for nine primer pairs corresponded to those expected from the genomic data. Thus, our primer pairs are potentially applicable to a wide variety of fish species and serve as an initial step for isolating single-copy nuclear DNA sequences.     

Influence of stock levels, fishing effort and environmental factors on anglers' catches of Atlantic salmon, Salmo salar L., and sea trout, Salmo trutta L.

Abstract. Monthly catches of Atlantic salmon, Salmosalar L., and sea trout, Salmo trutta L., by anglers in a west of Ireland fishery were analysed. Data were available for 50 months from the years 1971 to 1981. The most important single determinant of catch was found to be fishing effort measured in boat-days. An additional 10 boat days were found to correspond to a catch of almost 6 salmon and 23 sea trout. The relationship between catch and stock was weaker, though a relatively high catchability of sea trout at low stock levels was recorded. Slock levels, fishing effort and environmental factors accounted for much, but not all, of the variation in catch from month to month and from year to year. Most of the effect of rainfall, sunshine and water level was attributable to variations in fishing effort associated with these factors.     

Effect of <Emphasis Type="Italic">Lactococcus lactis</Emphasis> K-C2 on the growth performance,amino acid content and gut microflora of amberjack <Emphasis Type="Italic">Seriola dumerili</Emphasis>

This study aimed to evaluate the effect of Lactococcus lactis K-C2 on the growth performance, microbial diversity, and release of free amino acids in the intestinal tract and the edible parts of young amberjack, Seriola dumerili. Fish were fed a diet with or without strain K-C2 (2?×?10¹⁰ cfu/g feed) for 25 days. The results indicated that the growth performance of fish in the treated group was significantly higher than those in the control group (p?<?0.05). The amount of five amino acids (aspartate, sarcosine, taurine, alanine, and arginine) in the gut content and 13 of 21 amino acids in the edible parts of fish in the treated group were significantly higher (p?<?0.05) than those in the control group. Sphingomonas, Propionibacterium, and Mycobacterium were observed in gut microflora of fish in both the control and treated groups. Staphylococcus and Kocuria were detected in one sample from the control and treated groups; Acinetobacter and Acidobacteria were found in one sample from the control group. L. lactis was only found in one sample in the treated group. In conclusion, the dietary administration of probiotic L. lactis stimulated growth, reduced feed consumption, and improved the nutritional value of cultured amberjack.     

不同碳源氮源对腐霉菌株生长的影响

在喀麦隆芋芳根涡病病原研究中，测定了不同碳源、氮源对分离自喀麦隆芋艿田间及来自中国的腐霉菌株生长习性的影响。实验结果表明，除了钟腐霉（Ｐｙｔｈｉｕｍｖｅｘａｎｓ）菌株只能吸收葡萄糖、果糠而不能吸收蔗糖外，其余腐霉菌株均能利葡萄糖、果糖、蔗糖作为碳源。所有试验菌株均不能利用半乳糖、麦芽糖及可溶性淀粉。钟腐霉菌株之形态特征与特殊碳源营养的相关性显示了用碳源作为菌株鉴定辅助标准的可行性，氮源营养试验结果表明，所有腐霉菌株均能利用四种氮源，根据不同氮源对菌丝生长的影响，依次为Ｌ－天门冬氨酸，Ｌ－精氨酸，硝酸铵，硝酸钾。     

Evaluation of a Collagenase Generated Osteoarthritis Biomarker in Naturally Occurring Canine Cruciate Disease

Objective— To determine the clinical value of a novel osteoarthritis (OA) biomarker in detecting canine cruciate disease.
Study Design— Cross sectional clinical study.
Animals— Dogs (n=22) with cranial cruciate ligament (CCL) rupture and 12 control dogs.
Methods— Concentrations of collagenase-generated cleavage epitope of type II collagen (Col2-3/4C_{long mono}, or C2C) in serum, urine, and joint fluid were compared between a group of dogs with CCL rupture and a control group. Correlation of C2C concentrations to the clinical stage of stifle OA was also evaluated.
Results— There were no significant differences in C2C concentrations in serum, urine, and joint fluid between groups ( P >.05). Subjective scores of lameness, joint effusion, osteophytosis were significantly more severe in the CCL rupture group compared with the control group ( P <.05). There was no significant correlation of C2C concentrations with clinical stage of stifle OA ( P >.05).
Conclusion— This OA biomarker did not detect pathology associated with CCL rupture. Our results suggest that collagenase-specific degradation of type II collagen in articular cartilage may not be involved in the early stage of naturally occurring canine cruciate disease, and that pathology associated with naturally occurring CCL rupture is different from that of experimental OA model.
Clinical Relevance— C2C is not clinically useful in detecting CCL rupture in dogs.     

Potato Facing Global Challenges: How,How Much,How Well?

This paper surveys issues and developments emerging from the keynotes and participants’ presentations during the 20th EAPR Triennial Conference, held in Versailles, France, in July 2017, and puts them into the perspective of the general theme of the meeting: potato facing global challenges. It reveals important and far-reaching innovations in many areas of potato research, including breeding (genomic selection, high-throughput phenotyping, genome editing), plant protection (biocontrol) and seed production, but also a general innovation approach that follows an incremental pathway (and maintains many existing lock-in situations), and favours substitution strategies over system re-conceptualisation and testing, however urgently needed these might be to achieve or improve the sustainability of potato production in the medium to long run. While the assets and importance of potato as both a wholesome food and an essential part of future worldwide food systems were once more evidenced and highlighted, the contributions also revealed (i) a growing dichotomy between research activities carried out in high-income vs in low- or moderate-income countries, respectively; (ii) some gaps in the assessment of the sustainability of potato production in the medium to long run (external inputs such as fertilisers or pesticides, land and energy use efficiency); and (iii) persistent weaknesses in the integration of individual solutions into complete, operational potato production systems. Some areas for future investigations are identified.     

Identification of genetic sources with attenuated <Emphasis Type="Italic">Tomato chlorosis virus</Emphasis>-induced symptoms in <Emphasis Type="Italic">Solanum</Emphasis> (section <Emphasis Type="Italic">Lycopersicon</Emphasis>) germplasm

The whitefly-transmitted Tomato chlorosis virus (ToCV) (genus Crinivirus) is associated with yield and quality losses in field and greenhouse-grown tomatoes (Solanum lycopersicum) in South America. Therefore, the search for sources of ToCV resistance/tolerance is a major breeding priority for this region. A germplasm of 33 Solanum (Lycopersicon) accessions (comprising cultivated and wild species) was evaluated for ToCV reaction in multi-year assays conducted under natural and experimental whitefly vector exposure in Uruguay and Brazil. Reaction to ToCV was assessed employing a symptom severity scale and systemic virus infection was evaluated via RT-PCR and/or molecular hybridization assays. A subgroup of accessions was also evaluated for whitefly reaction in two free-choice bioassays carried out in Uruguay (with Trialeurodes vaporariorum) and Brazil (with Bemisia tabaci Middle-East-Asia-Minor1—MEAM1?=?biotype B). The most stable sources of ToCV tolerance were identified in Solanum habrochaites PI 127827 (mild symptoms and low viral titers) and S. lycopersicum ‘LT05’ (mild symptoms but with high viral titers). These two accessions were efficiently colonized by both whitefly species, thus excluding the potential involvement of vector-resistance mechanisms. Other promising breeding sources were Solanum peruvianum (sensu lato) ‘CGO 6711’ (mild symptoms and low virus titers), Solanum chilense LA1967 (mild symptoms, but with high levels of B. tabaci MEAM1 oviposition) and Solanum pennellii LA0716 (intermediate symptoms and low level of B. tabaci MEAM1 oviposition). Additional studies are necessary to elucidate the genetic basis of the tolerance/resistance identified in this set of Solanum (Lycopersicon) accessions.     

Solute recycling by crops and leaching in a drained arable soil

Preferential flow, as it bypasses the soil matrix, can greatly enhance the leaching of chemicals. When a soil is drained there is the risk that such short‐circuiting results in more or less direct passage of polluting chemicals from the soil to the groundwater. If the groundwater table is shallow the chemicals could be transferred back into the surface soil by hydraulic lift through roots and subsequent release by exudation or from decaying plant residues and again become exposed to leaching by preferential flow, thus strongly enhancing the chance of export via the drains. We investigated the leaching of bromide in a tile‐drained arable field over 2 years of crop rotation. The site was a former wetland, artificially drained a century ago for agriculture. Bromide was applied over 1.6 ha at a dosage of 10 g Br per m² in August 1995 after the harvest of wheat. During the 2 years 18% of the applied bromide was exported via the drainage system, most of it in preferential flow events and more than half of it in a single winter storm 5 months after the application. Within 7 months 56% of the applied tracer was leached out of the main root zone into the groundwater. Subsequently the tracer re‐emerged in water taken up by sugar beet in the following season. The beet accumulated 50% of the initially applied bromide in their leaves and released it again after harvest when the leaves were left as green manure on the field. Our results show that this recycling of solutes to the topsoil can have an important influence on their leaching as the solutes are thus again exposed to preferential transport into drains in the course of preferential flow events.     

Sample size and power determination for detecting interactions in mixtures of chemicals

In the analysis of mixtures of drugs/chemicals it is often of interest to test for the presence of interaction. If the hypothesis of no interaction (additivity) is not rejected, then the analyst may reasonably claim additivity if and only if the study is powered to a desired (e.g., biologically meaningful) level. The objective of this article is to address the sample size and power issues related to testing the hypothesis of additivity at specified mixture points. The study of disinfectant by-products (DBPs) found in drinking water, described in earlier literature, is used to illustrate the procedures for estimating power and sample sizes for detecting interactions at specified mixtures. The four trihalomethanes used in the study are bromodichloromethane (BDCM), chlorodibromomethane (CDBM), chloroform (CHCl₃), and bromoform (CHBr₃)     

Hydraulic Retention Time Influence on Improving Flocculation in the Activated Sludge Processes Through Polyelectrolytes

Hydraulic retention time (HRT) influence improving sludge flocculation with adding the polyelectrolytes (non-ionic, anionic, and cationic) was studied on an activated sludge (AS) system fed with synthetic domestic wastewater (SDW), dairy industry wastewater (DIW), and caramel industry wastewater (CIW). The sludge volumetric index, food/microorganism ratio (F/M), and mixed liquor volatile suspended solids at different HRTs (6, 8 and 10 h) were monitored on an experimental model. Results showed that both SDW and IW had the best sludge flocculation conditions at 8 h and 100 mL of non-ionic polyelectrolyte (0.2 mg L^?1). In addition, this phenomenon reached the organic matter removal efficiencies of 95.9, 95.7, and 94.2% for SDW, DIW, and CIW, respectively. Therefore, optimum HRT increased the organic matter removal efficiencies by 10%, sludge concentration by 37% (22–55%), and F/M ratio by 70%. Moreover, the polyelectrolytes used in AS improved the sludge flocculation by 2.9 times.