Modeling spatial variability in the life-cycle costs of low-volume forest roads

Cost estimation is probably the most decisive factor in the process of computer-aided, preliminary planning for low-volume road networks. However, the cost of construction is normally assumed to be route-independent for a specific project area, resulting in sub-optimal layouts. This is especially true for mountainous terrain and in areas with unstable subsoil. Here, we present a model for more accurately estimating spatial variability in road life-cycle costs, based on terrain surface properties as well as geological properties of the subsoil. This parametric model incorporates four structural components: embankment, retaining structures, pavement, and drainage and stream-crossing structures. It is linked to a geo-database that allows users to derive location-specific parameter values as input. In applying this model, we have demonstrated that variability in costs ranges widely for mountainous areas, with the most expensive construction being approximately five times greater there than on more favorable sites. This variability strongly affects the optimal layout of a road network. First, when location-specific slope gradients are considered, costs are reduced by about 17% from those calculated via currently available engineering practices; when both slope gradient and geotechnical formations are included, those costs are decreased by about 20%. Second, the length of the road network is increased by about 4% and 10% respectively, compared with current practices.     

Nitrogen uptake from 15N-enriched fertilizer by four tree crops in an Amazonian agroforest

Mixed tree cropping systems have been proposed for sustainable nutrient management in the humid tropics. Yet, the nutrient interactions between intercropped trees have not been addressed sufficiently. In the present study we compare the temporal and spatial patterns of the uptake of applied ¹⁵N by four different tree crops in a mixed tree cropping system on a Xanthic Ferralsol in central Amazônia, Brazil, during one year. Most of the N uptake occurred during the first two weeks. Very little N was recovered by peach palm (Bactris gasipaes), more by cupuassu (Theobroma grandiflorum) and annatto (Bixa orellana) and most by Brazil nut (Bertholletia excelsa). Due to tree pruning the total accumulation of applied ¹⁵N in the above-ground biomass of annatto decreased throughout the year. It remained constant in cupuassu and peach palm and increased in Brazil nut. Brazil nut showed an extensive root activity and took up more fertilizer N applied to neighboring trees than from the one applied under its own canopy in contrast to the other three tree crops. Therefore, trees with wide-spread root systems may not need to receive N fertilizer directly but can take up N applied to other trees in the mixed cropping system. This means that such trees may effectively decrease N leaching when intercropped with trees that have dormant periods or places with low N uptake, but also exert considerable resource competition.This revised version was published online in November 2005 with corrections to the Cover Date.     

Homogeneous shear stress field of wood in an Arcan shear test configuration measured by means of electronic speckle pattern interferometry: description of the test setup

Wood Science and Technology - Several studies have dealt with the problem of how to measure the shear modulus of small clear wood specimens, avoiding bias from normal compression, bending, tension...     

Associations among Haemophilus parasuis,Mycoplasma hyorhinis,and porcine reproductive and respiratory syndrome virus infections in pigs with polyserositis

The objective of this study was to determine the associations among Haemophilus parasuis, Mycoplasma hyorhinis, and porcine reproductive and respiratory syndrome (PRRS) virus (EU-field strain) infections in 95 pigs with polyserositis. A significant association between H. parasuis and M. hyorhinis was identified. H. parasuis and M. hyorhinis were significantly more often detected in PRRS virus positive pigs.     

Breast cancer prevention by green tea catechins and black tea theaflavins in the C3(1) SV40 T,t antigen transgenic mouse model is accompanied by increased apoptosis and a decrease in oxidative DNA adducts

Tea consumption is associated with a reduced risk of mammary cancer as reflected by epidemiological studies and experiments in carcinogen-induced rodent models of mammary carcinogenesis. We tested the hypothesis that green tea catechins (GTC) or theaflavins from black tea (BTT) interfere with mammary carcinogenesis in C3(1) SV40 T,t antigen transgenic multiple mammary adenocarcinoma (TAg) mice and that GTC/BTT affect tumor survival or oxidation status. TAg mice received GTC/BTT (0.05%) in drinking water for their lifetime. As compared to control mice, they survived longer and had smaller tumors. On microscopic inspection, the size of the largest tumor per mouse was decreased by 40-42% (p<0.01). GTC (0.01%) and BTT (0.05%) increased levels of cleaved caspase 3 in tumor tissue by 67 and 38%, respectively (p<0.05), intimating increased apoptosis. Tumor levels of the malondialdehyde-DNA adduct M1dG in mice receiving GTC or BTT (0.05%) were reduced by 78 (p<0.001) or 63% (p<0.05), respectively, as compared to controls. The results render the exploration of the breast cancer chemopreventive properties of tea preparations in humans worthwhile.     

Application of a headspace sorptive extraction method for the analysis of volatile components in South African wines

A headspace sorptive extraction (HSSE) in combination with thermal desorption gas chromatography-mass spectrometry (TD-GC-MS) method for the analysis of volatile components (alcohols, esters, carbonyls, acids, phenols and lactones) in wine samples was developed. Extraction conditions such as salting-out effects, sorption time, stirring speed, phase ratio, extraction temperature, and effect of pH were thoroughly evaluated as part of method validation. The method was very sensitive with LODs and LOQs between 50 pg/L to 299 microg/L and 0.2 ng/L to 0.996 microg/L, respectively. Repeatability for all the compounds was between 3 and 22%. The intermediate repeatability was obtained within the acceptable range. Out of 39 volatile compounds selected, 37 were detected and quantitated. The method was found to be simple, cost-effective, sensitive, and use a small sample volume. The method was successfully applied for the routine analysis of 79 young red and white wine samples from various South African districts.     

Correction to: Nordic forest management towards climate change mitigation: time dynamic temperature change impacts of wood product systems including substitution effects

European Journal of Forest Research -     

Nordic forest management towards climate change mitigation: time dynamic temperature change impacts of wood product systems including substitution effects

European Journal of Forest Research - Climate change mitigation trade-offs between increasing harvests to exploit substitution effects versus accumulating forest carbon sequestration complicate...     

In silico prediction of Gallibacterium anatis pan-immunogens

The Gram-negative bacterium Gallibacterium anatis is a major cause of salpingitis and peritonitis in commercial egg-layers, leading to reduced egg production and increased mortality. Unfortunately, widespread multidrug resistance and antigenic diversity makes it difficult to control infections and novel prevention strategies are urgently needed. In this study, a pan-genomic reverse vaccinology (RV) approach was used to identify potential vaccine candidates. Firstly, the genomes of 10 selected Gallibacterium strains were analyzed and proteins selected on the following criteria; predicted surface-exposure or secretion, none or one transmembrane helix (TMH), and presence in six or more of the 10 genomes. In total, 42 proteins were selected. The genes encoding 27 of these proteins were successfully cloned in Escherichia coli and the proteins expressed and purified. To reduce the number of vaccine candidates for in vivo testing, each of the purified recombinant proteins was screened by ELISA for their ability to elicit a significant serological response with serum from chickens that had been infected with G. anatis. Additionally, an in silico prediction of the protective potential was carried out based on a protein property prediction method. Of the 27 proteins, two novel putative immunogens were identified; Gab_1309 and Gab_2312. Moreover, three previously characterized virulence factors; GtxA, FlfA and Gab_2156, were identified. Thus, by combining the pan-genomic RV approach with subsequent in vitro and in silico screening, we have narrowed down the pan-proteome of G. anatis to five vaccine candidates. Importantly, preliminary immunization trials indicated an in vivo protective potential of GtxA-N, FlfA and Gab_1309.

Electronic supplementary material

The online version of this article (doi:10.1186/s13567-014-0080-0) contains supplementary material, which is available to authorized users.     

Effects of the needle bladder rust (Chrysomyxa rhododendri) on Norway spruce: implications for subalpine forests

Norway spruce trees in the subalpine forests of the European Alps are frequently attacked by the needle rust Chrysomyxa rhododendri. The obligate parasite undergoes a complex life cycle with a host shift between rhododendrons (Rhododendron sp.) and Norway spruce [Picea abies (L.) Karsten] and causes a yellowing and defoliation of the current-year needles in summer. Infected trees show several anatomical, morphological and physiological modifications, including a decrease in pigment content and net photosynthesis of infected needles, lower biomass production and reduced radial and height growth. The consequences are diminished timber yield and cripple growth. Because of repeated heavy infections in recent years, forest managers report increasing difficulties in both natural regeneration and afforestation at high elevation sites, where rhododendrons occur. This review gives a summary of the present knowledge about the effects of C. rhododendri infections on Norway spruce, including so far unpublished findings and with particular attention to the phenomena of resistant trees. Implications for subalpine forests and counter strategies are discussed.