In silico prediction of Gallibacterium anatis pan-immunogens

The Gram-negative bacterium Gallibacterium anatis is a major cause of salpingitis and peritonitis in commercial egg-layers, leading to reduced egg production and increased mortality. Unfortunately, widespread multidrug resistance and antigenic diversity makes it difficult to control infections and novel prevention strategies are urgently needed. In this study, a pan-genomic reverse vaccinology (RV) approach was used to identify potential vaccine candidates. Firstly, the genomes of 10 selected Gallibacterium strains were analyzed and proteins selected on the following criteria; predicted surface-exposure or secretion, none or one transmembrane helix (TMH), and presence in six or more of the 10 genomes. In total, 42 proteins were selected. The genes encoding 27 of these proteins were successfully cloned in Escherichia coli and the proteins expressed and purified. To reduce the number of vaccine candidates for in vivo testing, each of the purified recombinant proteins was screened by ELISA for their ability to elicit a significant serological response with serum from chickens that had been infected with G. anatis. Additionally, an in silico prediction of the protective potential was carried out based on a protein property prediction method. Of the 27 proteins, two novel putative immunogens were identified; Gab_1309 and Gab_2312. Moreover, three previously characterized virulence factors; GtxA, FlfA and Gab_2156, were identified. Thus, by combining the pan-genomic RV approach with subsequent in vitro and in silico screening, we have narrowed down the pan-proteome of G. anatis to five vaccine candidates. Importantly, preliminary immunization trials indicated an in vivo protective potential of GtxA-N, FlfA and Gab_1309.

Electronic supplementary material

The online version of this article (doi:10.1186/s13567-014-0080-0) contains supplementary material, which is available to authorized users.     

A test of the individual feeding activity and food size preference in rainbow trout using demand feeders

Feeding activity and food size preferences were investigated in three groups of rainbow trout with initial weights ranging from 200 to 1000 g. Fish were given the option of releasing food from either of two demand feeding devices that contained either 6 mm or 9 mm food pellets. Individual biting activity (to activate release of food) was continuously monitored using specially designed passive integrated transponders (PIT-tags). In each of the groups, biting activity was strongly influenced by three individuals, which accounted for 70–85% of the total. Thus, high bite activity by few individuals indicates the development of social dominance hierarchies. There was no statistically significant correlation between number of bites and growth rate, indicating that the fish that operated the demand feeders did not gain any growth advantage. Trout that dominated the actuation of the feeders were found among both medium- and large-sized fish. There was no evidence of active food size selection, and the fish that most frequently operated the feeders defended one area of the tank rather than preferring the trigger that would have delivered food of the optimal size.     

鱼粉质量对中国对虾、真鲷、饲料转化率和蛋白质消化率的影响

IntroductionInherent to the practice of intensive aquaculture is the generation of wastes having immediate and verybroad effects on the aquatic environment.There is a growing consensus about the need to reduce waste pro-duction in aquaculture to minimize the negative impacts on the environment.Nitrogen(N) and phosphorus(P) wastes are major concerns for many aquaculture operations.In the past,formulation of diets in intensive aquaculture was often aimed at meeting requirements formaximum growt…     

A simple and inexpensive spawning and egg collection system for fish with pelagic eggs

A spawning and egg collecting system for fish with pelagic eggs is described and discussed. The spawning unit is a 175 m³ submersible plastic pen supported by a polyethylene floating collar. The eggs are collected by rotating the water column in the pen and placing a net in the rotating water. The system is inexpensive and easy to operate. Temperature and illumination control are feasible.The quantity collected in the 1981 spawning season was 138 million eggs. Obtained eggs were of good quality. The theoretical spawning potential of the brood stock was 271 million eggs. This difference was mainly ascribed to suboptimal collection, but also to incomplete spawning and sinking of unfertilized and dead eggs.     

The cytochrome P450 system of Atlantic salmon (Salmo salar): II. Variations in hepatic catalytic activities and isozyme patterns during an annual reproductive cycle

A group of Atlantic salmon (Salmo salar) was followed through their first year of maturation and spawning. At monthly intervals, starting with juvenile fish in December, 5–7 fish of each sex were killed, and liver and plasma were sampled. The last sampling point was of spawning fish in November a year later. Variables in the cytochrome P450 (P450) system were studied in hepatic microsomes, and estradiol 17 was measured in the plasma of females to assess the maturational status. The P450 1A1-mediated 7-ethoxyresorufin O-deethylase (EROD) started at high levels in winter, but decreased to non-detectable activities in pre-spawning females. Decreases, but not to the same extent, were also observed during this period in total cytochrome P450, cytochrome b₅, NADPH-cytochrome P450 reductase, and in the content of two immunochemically determined P450 isozymes. At the same time, LSI levels increased in maturing females (starting in July), and GSI levels increased in both sexes (starting in May). Sex specific differences were observed in pre-spawning fish in September and October, with levels of total P450, b₅, NADPH-cytochrome P450 reductase, EROD and P450 isozymes significantly lower in females. At the same time, plasma estradiol-17 levels reached peak values in females. The results point to the important role of sex steroids such as estradiol-17 as major factors in the regulation of final sexual maturation. However, this study also indicates that there may be estradiol-17 independent events of equal importance in the early stages of gonadal maturation that may involve the P450 system. The changes observed in the P450 system (as a major drug and steroid metabolizing system) of Atlantic salmon during sexual maturation may be of importance both in the endogenous transduction of hormonal signals, and as a pharmacological basis for designing therapeutic treatment of diseases in the aquaculture industry.Parts of this work were presented at the 5th International Symposium on Responses of Marine Organisms to Pollutants, April 1989 in Plymouth, United Kingdom (Larsen and Goks\/oyr 1989).     

Tenerife's freshwater macroinvertebrates: Status and threats (Canary Islands,Spain)

• 1 This paper lists 171 freshwater macroinvertebrate taxa from Tenerife (excluding chironomids) based on this study and other published information. Canarian endemism and a Mediterranean origin are dominant features in the data set. At least 14 species are Tenerife endemics. Endemism is especially high in the Diptera, Trichoptera and Coleoptera.
• 2 Extensive investigations were carried out at 57 sites in six different habitat categories and from at least two seasons. The most species-rich habitats were those with permanently running water, a biotope that is rare and diminishing in Tenerife.
• 3 The principal threat to freshwater environments is an increase in human exploitation of the water resources, which, if it is not moderated, will cause extinctions in the near future. Taxa that do not favour man-made canals are especially at risk—a risk that is increased by the small number of populations. These include the Canarian endemics Wormaldia tagananana, Tinodes canariensis (Trichoptera), Dixa tetrica (Diptera) and Baetis pseudorhodani (Ephemeroptera). Thirty-nine species were found at five or fewer sites.
• 4 Some species can survive in intermittent streams, although we found less than half of the taxa present in this habitat, indicating the extent of the diversity reductions that might be expected to follow the drying up of permanent streams.
• 5 Species living in the thin film of water in the madicolous habitats are similarly at risk. Three Canarian endemics were found exclusively in this habitat: Hydrotarsus pilosus, Limnebius punctatus (Coleoptera) and Satchelliella binunciolata (Diptera).
• 6 As a first step, protective measures are proposed for five of the most species-rich streams. If these were to be implemented, they would make a significant contribution towards maintaining biodiversity in the fresh waters of Tenerife.

     

摄食促进剂对对虾生长的影响

IntroductionMeasures to assure that all feed offered to animals in commercial operation is consumed and to reduceformulated feed waste pollution,have been considered as some of the most relevant for lowering productioncosts in aquaculture.Considering the importance of chemical stimulant in development of the crustacean lifecircle,it is logical to assume that by adding attractants to the feed,the animal would rapidly find potentialfeed and ingest it.Additionally,measures involving the incorpora…     

Changes in arterial PO₂, physiological blood parameters and intracellular antioxidants in free-swimming Atlantic cod (Gadus morhua) exposed to varying levels of hyperoxia

Free-swimming Atlantic cod (Gadus morhua) were exposed to water oxygen pressures (P _wO₂) ranging from 18.1 to 41.5 kPa and sampled for blood using an indwelling caudal artery cannula. Arterial blood oxygen pressure (P _aO₂) increased with increasing P _wO₂, from 12.0 kPa in normoxia (18.1 kPa) to 34.2 kPa in the highest hyperoxic level tested (41.5 kPa). Blood CO₂ pressure and plasma bicarbonate concentration increased with P _wO₂, indicating reduced ventilation with increased P _wO₂. Plasma glucose, sodium and potassium were not affected by water oxygen level. Blood oxidative stress biomarkers, reduced glutathione, oxidized glutathione and the oxidative stress index (ratio between oxidized and total glutathione) differed intermittently between normoxia and hyperoxia. The oxidative stress index was higher in the blood of exposed compared to unexposed control cod. Together with elevated P _aO₂, these findings suggest increased production of reactive oxygen species and increased oxidative stress in Atlantic cod exposed to hyperoxia.     

The use of historical collections to estimate population trends: A case study using Swedish longhorn beetles (Coleoptera: Cerambycidae)

Long term data to estimate population trends among species are generally lacking. However, Natural History Collections (NHCs) can provide such information, but may suffer from biases due to varying sampling effort. To analyze population trends and range-abundance dynamics of Swedish longhorn beetles (Coleoptera: Cerambycidae), we used collections of 108 species stretching over 100 years. We controlled for varying sampling effort by using the total number of database records as a reference for non-red-listed species. Because the general frequency of red-listed species increased over time, a separate estimate of sampling effort was used for that group. We observed large interspecific variation in population changes, from declines of 60% to several hundred percent increases. Most species showed stable or increasing ranges, whereas few seemed to decline in range. Among increasing species, rare species seemed to expand their range more than common species did, but this pattern was not observed in declining species. Historically, rare species did not seem to be at larger risk of local extinction, and population declines were mostly due to lower population density and not loss of sub-populations. We also evaluated the species’ declines under IUCN red-list criterion A, and four currently not red-listed species meet the suggested threshold for Near Threatened (NT). The results also suggested that species’ declines may be overlooked if estimated only from changes in species range.     

Prey‐type‐dependent foraging of young‐of‐the‐year fish in turbid and humic environments

Abstract – Fish, which are generally visual foragers, experiences reduced reaction distance in visually degraded environments, which has consequences for encounter rates with prey. Small prey is detected at shorter distances than larger prey, and piscivores are therefore predicted to be more strongly affected by visual degradation. In experiments, roach (Rutilus rutilus) were fed two plankton prey types and pike (Esox lucius) were fed Daphnia and larval roach, in clear water, algal turbid water and water coloured brown by dissolved organic matter (DOM). Planktivorous foraging in roach was not affected by visual degradation, while pike foraging on both Daphnia and larval roach was. Pike showed increased reaction distance to Daphnia in visually degraded water, while it was severely reduced with roach as prey even if the visual range was not reduced below pike reaction distances in clear water. Pike foraging on Daphnia was not affected, but when foraging on roach, the reduced search efficiency was counteracted by increased attack rates. However, there was no increase in movement and no difference between turbid and DOM treatments. Effects on piscivores will likely become more pronounced at later life stages as prey size and the reliance on long‐distance detection increases at the same time as changing climatic conditions may further deteriorate the visual conditions in future.