Karyotype analysis and chromosomal evolution in Asian species of Corchorus (Malvaceae s. l.)

Here, we report the karyotypes and mean haploid idiograms of the ten Asian Corchorus species (2n = 2x = 14). Chromosomes were small, with a mean chromosome length of 2.30 μm. The largest chromosome was recorded in C. pseudo-olitorius (3.50 μm) and the shortest in C. pseudocapsularis (1.60 μm). The karyotypes of the two cultivated species (C. capsularis and C. olitorius) and C. pseudo-olitorius were the most diverse and specialized, whereas those of C. depressus and C. trilocularis were the least diverse. C. fascicularis had the most asymmetrical and C. urticifolius the most symmetrical karyotypes. An increase in genome size was accompanied by increasing karyotype diversity in terms of morphologically distinct chromosome types and interchromosomal asymmetry, with uneven distribution of additional DNA throughout the karyotype. A positive correlation between interchromosomal asymmetry and dispersion index suggested that size differences between chromosomes were mainly associated with karyotype asymmetry. Karyotypes of the Corchorus species became progressively asymmetrical in the course of evolution. Relationships among the ten Corchorus species were defined by using a neighbor-joining tree inferred from inter-simple sequence repeat data. C. fascicularis and C. pseudocapsularis, with shorter karyotypes and smaller genomes, were closely related to C. pseudo-olitorius and C. capsularis, respectively, which were characterized by relatively longer karyotypes and larger genomes. However, the two cultivated species with different levels of interchromosomal asymmetries, dispersion indices and genome sizes were distantly related. Taking this molecular evidence into consideration, we have discussed chromosomal evolution in relation to karyological data including genome size.     

LONG‐TERM MANURING AND FERTILIZER EFFECTS ON DEPLETION OF SOIL ORGANIC CARBON STOCKS UNDER PEARL MILLET‐CLUSTER BEAN‐CASTOR ROTATION IN WESTERN INDIA

Soil organic carbon (SOC) pools are important for maintaining soil productivity and reducing the net CO₂ loading of the atmosphere. An 18‐year old long‐term field experiment involving pearl millet‐cluster bean‐castor sequence was conducted on an Entisol in western India to examine the effects of chemical fertilizers and manuring on carbon pools in relation to crop productivity and C sequestration. The data showed that even the addition of 33.5 Mg ha⁻¹ C inputs through crop residues as well as farm yard manure could not compensate the SOC depletion by oxidation and resulted in the net loss of 4.4 Mg C ha⁻¹ in 18 years. The loss of SOC stock in the control was 12 Mg C ha⁻¹. Conjunctive use of chemical fertilizers along with farm yard manure produced higher agronomic yields and reduced the rate of SOC depletion. The higher average seed yields of pearl millet (809 kg ha⁻¹), cluster bean (576), and castor (827) over six cropping seasons were obtained through integrated use of fertilizers and manure. For every Mg increase in profile SOC stock, there was an overall increase of 0.46 Mg of crop yield, comprising increase in individual yield of pearl millet (0.17 Mg ha⁻¹ y⁻¹ Mg⁻¹ SOC), cluster bean (0.14) and castor (0.15). The magnitude of SOC build up was proportional to the C inputs. Carbon pools were significantly correlated with SOC, which increased with application of organic amendments. Threshold C input of 3.3 Mg C ha⁻¹ y⁻¹ was needed to maintain the SOC stock even at the low antecedent level. Copyright © 2011 John Wiley & Sons, Ltd.     

Influence of irrigation frequencies and phosphate fertilization on actual evapotranspiration rate, yield and water use pattern of rajmash (Phaseolus vulgaris L.)

The hypothesis was tested, whether soil wetness and phosphorus status could regulate the evapotranspiration rate (ET_R), which is of special interest in the lower Gangetic Plain. Rajmash was grown during November-February of 2003-2004 and 2004-2005 on a sandy loam soil, and was irrigated when cumulative pan evaporation (CPE) attained the value of 33 mm (CPE₃₃); 44 mm (CPE₄₄) and 66 mm (CPE₆₆). Four levels of phosphate application were 0 kg P₂O₅ ha⁻¹ (P₀); 30 kg P₂O₅ ha⁻¹ (P₃₀); 60 kg P₂O₅ ha⁻¹ (P₆₀) and 90 kg P₂O₅ ha⁻¹ (P₉₀). Seed yield under CPE₃₃ was 1.37 Mg ha⁻¹ and reduced by 18% and 35%, respectively under CPE₄₄ and CPE₆₆. Continuous increasing trend in yield was recorded with an increase in phosphate level (PL). Irrespective of growth stages, similar trends were recorded for leaf area index (LAI). Maximum variation in LAI among the treatments was recorded at 60 days after sowing. On average, actual ET_R was 1.37 mm day⁻¹ under CPE₃₃ and declined by 13% and 16% under CPE₄₄ and CPE₆₆, respectively. Variation in ET_R under different PL was highest under CPE₃₃ and lowest under CPE₄₄. Except P₉₀, irrespective of PL, highest value of water use efficiency (WUE) was obtained under CPE₄₄. However, magnitude of net evapotranspiration efficiency (WUE_ET) and irrigation efficiency (WUE_I) attained the highest level under CPE₃₃ regime. All water use indices showed an increasing trend with the increase in phosphate level from 0 to 90 kg ha⁻¹. Impact of phosphorus on various parameters was pronounced under CPE₃₃.     

Growth and reproduction of the vermicomposting earthwormPerionyx excavatus as influenced by food materials

An outdoor study was undertaken using polyethylene containers to assess the suitability of different organic residues, soybean straw (Glycine max L. Merril.), wheat straw (Triticum aestivum L.), maize stover (Zea mays L.), chickpea straw (citer arietinum L.) and city garbage, as food for the tropical epigeic earthwormPerionyx excavatus, and to assess the influence of this earthworm on the decomposition of these materials. Maize stover was found to be the most suitable of the food materials used. Population growth ofP. excavatus was enhanced by addition of these organic materials in the temperature range 24°-30°C, while the population was adversely affected above 30°C in a vermiculture system. Addition of earthworms accelerated the breakdown of residues, which ultimately resulted in a lowering of the C:N ratio, water-soluble carbon and carbohydrates, and increased ash percentage and cation exchange capacity compared with their respective controls.     

Use of RAPD-PCR for genetic analysis of Nicobari fowl of Andamans

1. The present study was conducted to estimate genetic relatedness among Nicobari fowls (Brown, Black and White) and an exotic bird (White Leghorn) using random amplified polymorphic DNA (RAPD) polymorphism. 2. A total of 25 decamer primers were screened among all the breeds of which 24 primers amplified the genomic DNA, generating 2000 to 200 bp bands. Ten primers generated reproducible and distinct RAPD profiles and were used for further analysis. 3. A total of 94 bands were amplified and 30 polymorphic bands (32%) were produced. The number of polymorphic loci ranged from 1 to 5 with an average of 3.0. 4. Among the native breeds Brown Nicobari showed higher genetic similarity (0.85) than Black Nicobari (0.80) and White Nicobari fowl (0.82). 5. Brown Nicobari showed high genetic similarity with Black Nicobari (0.87 +/- 0.029); least similarity was between White Nicobari and White Leghorn (0.77 +/- 0.028). 6. The RAPD profile of all Nicobari fowls on amplification with the primers PBG5 and PBA12 showed specific bands of molecular size 1050 and 785 bp, respectively. 7. The native breeds showed the least genetic distance with each other while White Leghorn appeared to be most distant from the native breeds.     

Optimizing Seed Sample Size for Zinc and Iron Analysis of Wild and Cultivated Lentil

Zinc and iron deficiencies affect billions of people globally and have direct impact on human health. Zinc and iron concentrations in plant materials are commonly analyzed by flame atomic absorption spectrometry (F-AAS). This research describes the optimal analysis method for precise zinc (Zn) and iron (Fe) analysis of seeds from the seven species of genus Lens. Estimation of Zn and Fe concentration in whole lentil seeds by F-AAS is destructive, using nitric acid digestion of seeds prior to instrument analysis. The procedure proposed for the determination of Zn and Fe concentration uses the minimum amount of lentil seed of all lentil species with suitable standard reference materials. The relative standard deviations of the method were about 5% for both Zn and Fe. The minimum sample amount 0.3 g of wild and 0.5 g of cultivated lentil seed samples was identified for accurate and precise estimation of Zn and Fe concentration.     

Net oxidative addition of C(sp3)-F bonds to iridium via initial C-H bond activation

Carbon-fluorine bonds are the strongest known single bonds to carbon and as a consequence can prove very hard to cleave. Alhough vinyl and aryl C-F bonds can undergo oxidative addition to transition metal complexes, this reaction has appeared inoperable with aliphatic substrates. We report the addition of C(sp(3))-F bonds (including alkyl-F) to an iridium center via the initial, reversible cleavage of a C-H bond. These results suggest a distinct strategy for the development of catalysts and promoters to make and break C-F bonds, which are of strong interest in the context of both pharmaceutical and environmental chemistry.     

Characterization of Tolerance Limit in Spirulina platensis in Relation to Nanoparticles

A study was carried out under in vitro conditions to characterize the growth of blue green alga, Spirulina platensis, in standard CFTRI medium containing different nanoparticles of copper oxide (CuO) (50 nm, 10 ppm), zinc oxide (ZnO) (50 nm, 10 ppm), tricalcium phosphate (TCP) (<100 nm, 90 ppm), and hydroxy apatite (HA) (<200 nm, 90 ppm). S. platensis exhibited significant higher growth in standard CFTRI medium containing 90 ppm phosphorus as nanoparticles of TCP and HA. On the other hand, calcium phosphate nanoparticles caused significant reduction in nitrate reductase activity as well as in protein content of the alga. Marked change in chlorophyll-a/b ratio was also noted when phosphorus was supplied through nano tricalcium phosphate and nano hydroxy apatite particles as compared to ionic form (K₂HPO₄). The study revealed that the growth of Spirulina in the presence of ZnO nanoparticles was retarded, while no growth was observed with CuO nanoparticles. It was concluded that alga Spirulina showed much sensitivity to nanoparticles of zinc and copper (<50 nm) and was able to tolerate the toxicity of nanophosphate (tricalcium phosphate <100 nm; hydroxy apatite <200 nm).     

Direct monitoring of Rhizobium sp. (Cicer) in nodules and soil using lac Z fusions

We constructed lacZ fusions in Rhizobium sp. (Cicer) by random Tn5-lacZ mutagenesis. The lacZ⁺ fusants formed blue colonies on a Rhizobial minimal medium containing 5-bromo-4-chloro-3-indolyl--D-galactopyranoside (X-gal). Rhizobium sp. (Cicer) fusant HSL-2 was identified in nodules and soil in a mixed population on the basis of the lacZ⁺ phenotype. Nodule occupancy of inoculated Rhizobium sp. (Cicer) HSL-2 (lacZ⁺) was assessed by directly streaking the nodule sap on X-gal plates. This method revealed differences between rhizobia carrying identical antibiotic markers. The rhizobial population in soil was estimated by direct plate counts using a medium containing X-gal. Introduction of lacZ into the Rhizobium sp. thus provided a simple and direct method for identifying strains from nodules and soil.