Predicting lean growth while accounting for correlated traits.

Lean tissue growth rate is usually estimated from indirect measurements including growth rate. A procedure to determine prediction equations for lean tissue growth rate is proposed. The procedure restricts the regression of fat growth rate on predicted lean growth rate to be equal to the regression of fat growth rate on actual lean growth rate. The restriction can be phenotypic or genetic if suitable parameter estimates are available. When applied phenotypically, selection on predicted lean tissue growth rate will result in selection differentials for both fat and lean tissue growth rates that are proportional to those obtained by direct selection for lean tissue growth rate. This restriction is desirable because expected correlated changes in fat are used to justify selection for lean tissue growth. Conventional prediction procedures have ignored correlated changes and obscured the original intent of using lean tissue growth rate as a biological selection criterion. When using conventional procedures to predict a biological selection criterion from indirect measurements, changes in important correlated traits may depend more on the choice of indirect measurements than on the choice of selection criterion.     

Do regional gradients in land-use influence richness, composition and turnover of bird assemblages in small woods?

Small patches of natural or semi-natural habitat have an important role in the conservation of biodiversity in human-dominated environments. The values of such areas are determined by attributes of the patch as well as its context in the surrounding land mosaic. There is a need for better understanding of the ways in which assemblages are influenced by patch context and the scale over which this occurs. Here we examine the influence of regional environmental gradients on the richness, annual turnover and composition of breeding bird species in small woods in south-eastern England. Regional gradients were defined independently of woods by an ordination of attributes for 5 km × 5 km landscape units across a 2100 km² region. Patch-level attributes, particularly area, were the most important predictors for most bird variables. For woodland migrants and woodland-dependent species, variables representing the context of each wood, either at a local or regional scale, explained significant additional variance in species richness after accounting for wood area, but did not do so for species turnover. Significant context effects for woodland-dependent species related to the extent of hedges and woodland cover in the local vicinity (<1 km radius), whereas for woodland seasonal migrants the best predictors of richness after patch area were two regional environmental gradients. The initial cue to settlement for migrants may be at a coarse regional scale, with selection for suitable landscapes that have a greater extent of woodland cover. Edge species showed different responses: they were influenced by the diversity of structural features in woods, and were a more-dominant component of the avifauna in isolated woods in open fenland environments of the region. Significant relationships between coarse regional gradients (25 km² units) and bird assemblages in small woods (0.5-30 ha) suggest that population and community processes in the avifauna operate across a broader scale than local patch neighbourhoods. They also highlight the importance of adopting a landscape or regional perspective on potential changes to land-use in rural environments, and on the conservation management of small reserves.     

Primary and secondary metabolite composition of kernels from three cultivars of Portuguese chestnut (Castanea sativa Mill.) at different stages of industrial transformation

Chestnut (Castanea sativa) is an important basic food in rural diets and a major starch crop used in a similar way to potatoes. Chestnuts are a fundamental economic resource in the "chestnut regions" not only for the fruit but also for the chestnut wood. Chestnuts have become increasingly important with respect to human health, for example, as an alternative gluten-free flour source. Chestnuts are also a rich source of other beneficial compounds, but there have been few studies on the composition during processing. In this study, we analyzed the chemical composition of three Portuguese cultivars at different stages of industrial processing. The chestnut cultivars were Longal, Judia, and Martaínha. All three cultivars had high moisture contents but were low in ash, crude fat, and crude protein contents, with high starch and low fiber contents. The free amino acid contents, including various essential amino acids, varied depending on the cultivar. All three cultivars also had a significant content of polyphenolics with gallic acid; ellagic acid was predominant among hydrolyzable and condensed tannins. Many of these compounds are known to exert significant positive effects on human health. The one-way analysis of variance for fresh chestnut shows significant differences among the three cultivars for most of the studied parameters. The same statistical analysis applied to each one of the two cultivars (Judia and Longal) sampled for the four processing steps analyzed indicates a significant effect of this factor in practically all of the constituents. On the other hand, the two-way analysis of variance shows that, besides the residual, the processing step and the interaction cultivar x processing step were the factors that more contributed for the total variation observed in the constituents analyzed, while the contribution of cultivar was much less significant.     

Lignin degradation by Agaricus bisporus accounts for a 30% increase in bioavailable holocellulose during cultivation on compost

The common mushroom Agaricus bisporus is a non-white rot saphrophytic fungus that can degrade lignin to free and utilize holocellulose embedded in fermented straw as present in compost. A new method is described to estimate the actual amount of bioavailable holocellulose in 3.8 kg compost cultures spawned with A. bisporus Horst U1 prior to and during a cultivation with two cycles of mushroom harvesting. The method shows that the initial amount of bioavailable holocellulose per culture, accounting for 130 +/- 22 g, is lower than the total holocellulose consumption by A. bisporus accounting for 182 +/- 15 g. This difference is explained by a 30% increase in bioavailable holocellulose. The increase is caused by the degradation of 95 +/- 3 g of holocellulose-shielding lignin. The results are discussed within the scope of the A. bisporus mushroom yield and lignin degradation by white rot fungi during growth on lignocellulose-containing materials.     

Influence of four soil maintenance practices on Collembola communities in a Mediterranean vineyard

We studied the influence of four soil maintenance practices on Collembola communities in the soil of a Mediterranean vineyard: (a) postemergence herbicide with glyphosate; (b) postemergence and pre-emergence herbicides with glyphosate, terbuthylazine, diuron and oryzalin; (c) natural flora and (d) tillage to a depth of 10–15 cm. Total Collembola abundance, species diversity and species richness significantly varied between the four practices. Notably, the practice using postemergence and pre-emergence herbicides had significantly lower values. Identification of Collembola at species level allowed an interspecies comparison and revealed significant differences for the most common species between the four practices, with each practice being characterized by a different set of species. None of the species were found to be significantly more abundant in the plots treated with postemergence and pre-emergence herbicides.     

抗稻瘿蚊品种多抗1的抗性遗传分析及抗性基因定位

稻瘿蚊是亚洲稻区主要害虫,采用抗虫品种进行防治是最理想的方法。1993～1995年,广东省农科院与国际水稻研究所有关专家紧密合作,对能抗华南4个稻瘿蚊生物型的品种多抗1作进一步抗性遗传分析,确认多抗1对中国稻瘿蚊生物型1和4的抗性受显性单基因控制,这个基因暂定名为GM—6(t)。以多抗1×丰银占1组合的F3代160个家系作基因标记,据DNA库分离个体分析(BSA)原理,用随机扩增多态性DNA(RAPD)标记物OPM6(1.4kb),首次成功地标记了这个抗性基因。随后多态性扩增产物经~(32)p标记,用作探针,检测另一个参考作图群体IR64×Azucena,将这个抗性基因定位在水稻第4条染色体上,位于RG214和RG163两个DNA限制性片段长度多态性(RFLP)标记之间。应用这些分子标记辅助选择有可能不必通过稻瘿蚊的直接筛选,快速准确地选育抗稻瘿蚊品种或进行抗性基因累加。     

Bovine arsenic toxicosis.

A ranch in central South Dakota had a number of dead calves because of arsenic poisoning. The clinical picture included diarrhea, central nervous system signs, and death. Gross necropsy findings included adequate body fat, stomachs full of normal-appearing ingesta, and large amounts of greenish brown watery fluid in the intestine and colon. Microscopically there was severe lymphoid tissue necrosis in the mesenteric lymph nodes and gut-associated lymphoid tissue. Chemical analysis of kidneys showed no significant amounts of lead; however, kidney arsenic concentrations were 25 to 44 ppm. The source was a small pile of Paris Green (common name for cupric acetoarsenite) found in an old dump site in the pasture.     

The crystal structure of human Argonaute2

Argonaute proteins form the functional core of the RNA-induced silencing complexes that mediate RNA silencing in eukaryotes. The 2.3 angstrom resolution crystal structure of human Argonaute2 (Ago2) reveals a bilobed molecule with a central cleft for binding guide and target RNAs. Nucleotides 2 to 6 of a heterogeneous mixture of guide RNAs are positioned in an A-form conformation for base pairing with target messenger RNAs. Between nucleotides 6 and 7, there is a kink that may function in microRNA target recognition or release of sliced RNA products. Tandem tryptophan-binding pockets in the PIWI domain define a likely interaction surface for recruitment of glycine-tryptophan-182 (GW182) or other tryptophan-rich cofactors. These results will enable structure-based approaches for harnessing the untapped therapeutic potential of RNA silencing in humans.     

First report on Meloidogyne chitwoodi hatching inhibition activity of essential oils and essential oils fractions

The Columbia root-knot nematode (CRKN), Meloidogyne chitwoodi, is an EPPO A2 type quarantine pest since 1998. This nematode causes severe damage in economically important crops such as potato and tomato, making agricultural products unacceptable for the fresh market and food processing. Commonly used nematicidal synthetic chemicals are often environmentally unsafe. Essential oils (EOs) may constitute safer alternatives against RKN. EOs, isolated from 56 plant samples, were tested against CRKN hatching, in direct contact bioassays. Some of the most successful EOs were fractionated and the hydrocarbon molecules (HM) and oxygen-containing molecules (OCM) fractions tested separately. 24 EOs displayed very strong hatching inhibitions (≥90 %) at 2 µL mL^?1 and were further tested at lower concentrations. Dysphaniaambrosioides, Filipendula ulmaria, Ruta graveolens, Satureja montana and Thymbra capitata EOs revealed the lowest EC₅₀ values (<0.15 µL mL^?1). The main compounds of these EOs, namely 2-undecanone, ascaridol, carvacrol, isoascaridol, methyl salicylate, p-cymene and/or γ-terpinene, were putatively considered responsible for CRKN hatching inhibition. S. montana and T. capitata OCM fractions showed hatching inhibitions higher than HM fractions. The comparison of EO and corresponding fractions EC₅₀ values suggests interactions between OCM and HM fractions against CRKN hatching. These species EOs showed to be potential environmentally friendly CRKN hatching inhibitors; nonetheless, bioactivity should be considered globally, since its HM and OCM fractions may contribute, diversely, to the full anti-hatching activity.     

A phenetic analysis and lateral key of the genus Lolium (Gramineae)

88 herbarium specimens of the genus Lolium were scored for 22 characters, comprising 7 vegetative, 8 inflorescence and 7 seed characters. The aim was to review the species relationship and to produce a lateral key to the genus. The data were analysed using principal components analysis, discriminant function analysis and cluster analysis. All analyses separated L. perenne, L. multiflorum and L. temulentum from each other. The 2 varieties of L. rigidum showed varying degrees of separation from each other and from L. multiflorum. Their distinction as a species and as 2 varieties is discussed. L. perenne and L. rigidum were shown to contain the greatest similarity between species and L. temulentum was found to be the most distinct. A lateral key is proposed that separates the species on the basis of 11 morphological characters that are easily scored in the field.