Genetic improvement of the Pacific oyster Crassostrea gigas (Thunberg) in Australia

The Pacific oyster industry in Australia is derived from importations from Japan in the late 1940s and early 1950s to Tasmania and is almost completely hatchery based. This makes it a good target for developing and deploying genetically improved strains. An allozyme survey comparing hatchery stocks with self‐recruiting Tasmanian stocks and with two collections from Japan found abundant variation and no significant evidence of allele loss. The subsequent selection programme (initiated in the summer of 1996/97) had several strands. We wanted to take advantage of the increased power that marker‐assisted selection could bring and, therefore, needed to develop a linkage map and isolate flanking markers around quantitative trait loci (QTLs). Several types of markers (allozymes, microsatellites and AFLPs) were used, and single‐pair crosses were set up; QTLs have been detected. Conventional selection programmes, one based on mass selection and one on family selection, have been established. Triploid Pacific oysters produced via chemical means have been available for several years, but rates of triploidy achieved by such means are usually less than 100%. In 1999, we will assess whether our tetraploid 2‐year‐old broodstock can be crossed with diploids to give 100% triploid offspring.     

Energy Boom and Gloom? Local Effects of Oil and Natural Gas Drilling on Subjective Well‐Being

Prior to the precipitous drop in oil prices in 2014, the U.S. had experienced a substantial increase in oil and natural gas extraction due to technological advancements including horizontal drilling and hydraulic fracturing. This increased energy development likely created both benefits and costs, but the net effects for local residents are not well understood. This paper examines the effects of conventional and horizontal oil and natural gas drilling in Texas on subjective assessments of life‐satisfaction and bad mental health days for nearby residents. Horizontal drilling has statistically significant deleterious effects on well‐being, but the effects are driven by the Dallas‐Fort Worth (DFW) metropolitan area, an area with both very high levels of horizontal drilling and a large urban population.     

Novel Fertilizer as an Alternative for Supplying Manganese and Boron to Soybeans

Soybean (Glycine max) commonly experience Mn deficiencies in the coarse-textured soils of Coastal Plain Virginia, especially under high pH conditions. The objective of this study was to investigate the ability of a novel coated fertilizer to provide Mn and B to soybeans in soils where Mn deficiency is common and B deficiency, although far less common than with Mn, is possible. A 60-d greenhouse experiment was conducted with three treatments: control, uncoated KCl, and Mn +B coated KCl applied to Bojac and Dragston sandy loams. Soil and whole plant tissue samples were collected throughout the experiment. Bojac and Dragston soils treated with the coated KCl contained 12.0 mg kg^?1 and 15.8 mg kg^?1 more Mehlich 1 – Mn, 21.7 mg kg^?1 and 23.0 mg kg^?1 more Mehlich 3 Mn, and 4.5 mg kg^?1 and 4.6 mg kg^?1 CaCl₂ – Mn than the control and uncoated KCl, respectively. Coated KCl increased above ground tissue Mn by 42.9 mg kg^?1 compared to the control and the uncoated KCl treatments in the Bojac soil, while the Dragston soil showed no significant differences in Mn tissue concentration between treatments. Above ground tissue, Mn was much lower in the Dragston soil than the Bojac, probably due to greater organic matter which chelates Mn keeping it less plant available. Boron concentrations did not differ in plant tissue or soil, regardless of the extraction method. Results indicate that the coated KCl product could consistently provide increased Mn concentration in acidic sandy soils despite varying levels of organic matter, but is not effective for B.     

Textural Stability of Intermediate‐Moisture Extrudates: Effects of Formulation

Effects of formulation on the textural stability of intermediate‐moisture, flour‐based, “jerky”‐type extrudates were assessed. Potato‐based extrudates containing various particulate‐meat concentrations and different plasticizers (sucrose, fructose, glycerol, and glucose) were produced and subjected to accelerated storage for three weeks. The elastic modulus of the samples was measured before storage and then weekly. The relative fluidity and moisture mobility of the specimens were assessed by dynamic mechanical spectrometry (DMS), electron spin resonance (ESR), and nuclear magnetic resonance (NMR). Samples were also evaluated by fluorometry and X‐ray diffraction to determine the extent of browning reaction and degree of molecular ordering, respectively. While elastic modulus increased appreciably during storage, firming was progressively reduced by entrained meat content and also by plasticizers, especially glycerol; plasticized and meat‐containing samples had correspondingly lower tan δ peak temperatures as measured by DMS. Textural results were also in keeping with fluidity and local viscosity as assessed by ESR measurements. NMR T1 relaxation values, reflecting moisture mobility, increased during storage. Diffraction spectra were consistent with published observations of hydrated starch, suggesting that water may have been released due to increased association of proteinaceous constituents. Fluorescence measurements confirmed moderate Maillard browning in all samples and significant chlorogenic browning in glucose‐containing samples, although these effects were unrelated to degree of firming. It was concluded that textural stability was optimized by interruption of the matrix by dispersed meat or by plasticization by low molecular weight constituents.     

Estimation of the phosphorus sorption capacity of acidic soils in Ireland

The test for the degree of phosphorus (P) saturation (DPS) of soils is used in northwest Europe to estimate the potential of P loss from soil to water. It expresses the historic sorption of P by soil as a percentage of the soil's P sorption capacity (PSC), which is taken to be α (Al_ox + Fe_ox), where Al_ox and Fe_ox are the amounts of aluminium and iron extracted by a single extraction of oxalate. All quantities are measured as mmol kg soil^?1, and a value of 0.5 is commonly used for the scaling factor α in this equation. Historic or previously sorbed P is taken to be the quantity of P extracted by oxalate (P_ox) so that DPS = P_ox/PSC. The relation between PSC and Al_ox, Fe_ox and P_ox was determined for 37 soil samples from Northern Ireland with relatively large clay and organic matter contents. Sorption of P, measured over 252 days, was strongly correlated with the amounts of Al_ox and Fe_ox extracted, but there was also a negative correlation with P_ox. When PSC was calculated as the sum of the measured sorption after 252 days and P_ox, the multiple regression of PSC on Al_ox and Fe_ox gave the equation PSC = 36.6 + 0.61 Al_ox+ 0.31 Fe_ox with a coefficient of determination (R²) of 0.92. The regression intercept of 36.6 was significantly greater than zero. The 95% confidence limits for the regression coefficients of Al_ox and Fe_ox did not overlap, indicating a significantly larger regression coefficient of P sorption on Al_ox than on Fe_ox. When loss on ignition was employed as an additional variable in the multiple regression of PSC on Al_ox and Fe_ox, it was positively correlated with PSC. Although the regression coefficient for loss on ignition was statistically significant (P < 0.001), the impact of this variable was small as its inclusion in the multiple regression increased R² by only 0.028. Values of P sorption measured over 252 days were on average 2.75 (range 2.0–3.8) times greater than an overnight index of P sorption. Measures of DPS were less well correlated with water‐soluble P than either the Olsen or Morgan tests for P in soil.     

Soil Nutrient and Fescue (Festuca spp.) Responses To Compost and Hydroseed on a Disturbed Roadside

Inadequate nutrients and poor soil quality pose challenges for turfgrass establishment on disturbed soils. Compost amendment has been shown to mitigate poor soil quality. This research was conducted to compare surface applications of compost to standard hydroseeding for improving soil chemical properties and turfgrass establishment. Plots established with either hydroseed or compost in spring 2007 were evaluated for soil pH, Mehlich-I extractable K, Mg, Zn, P, total N, organic C, and percent ground cover, fescue coverage and biomass production of tall (Festuca arundinacea Schreb.) and chewing's fescue [Festuca rubra L. ssp. fallax (Thuill.) Nyman]. Two years after plot establishment, the compost treatment had significantly increased Mehlich-I extractable soil P, K and Zn. Phosphorus increased 566% in the compost soil but only 17% in the hydroseeded soil. Higher percentages of ground coverage were reported in the compost than the hydroseed treatments with coverage in treatments declining from 2008 to 2009. Although the surface additions of compost initially enhanced the establishment and growth of fescue, vegetation may be limited in the long run by soil conditions in the root zone and competing broadleaf weeds.     

Annualized diameter and height growth equations for Pacific Northwest plantation-grown Douglas-fir, western hemlock, and red alder

Simulating the influence of intensive management and annual weather fluctuations on tree growth requires a shorter time step than currently employed by most regional growth models. High-quality data sets are available for several plantation species in the Pacific Northwest region of the United States, but the growth periods ranged from 2 to 12 years in length. Measurement periods of varying length complicate efforts to fit growth models because observed growth rates must be interpolated to a common length growth period or those growth periods longer or shorter than the desired model time step must be discarded. A variation of the iterative technique suggested by Cao [Cao, Q.V., 2000. Prediction of annual diameter growth and survival for individual trees from periodic measurements. Forest Sci. 46, 127–131] was applied to estimate annualized diameter and height growth equations for pure plantations of Douglas-fir, western hemlock, and red alder. Using this technique, fits were significantly improved for all three species by embedding a multi-level nonlinear mixed-effects framework (likelihood ratio test: p < 0.0001). The final models were consistent with expected biological behavior of diameter and height growth over tree, stand, and site variables. The random effects showed some correlation with key physiographic variables such as slope and aspect for Douglas-fir and red alder, but these relationships were not observed for western hemlock. Further, the random effects were more correlated with physiographic variables than actual climate or soils information. Long-term simulations (12–16 years) on an independent dataset using these annualized equations showed that the multi-level mixed effects models were more accurate and precise than those fitted without random effects as mean square error (MSE) was reduced by 13 and 21% for diameter and height growth prediction, respectively. The level of prediction error was also smaller than an existing similar growth model with a longer time step (ORGANON v8) as the annualized equations reduced MSE by 17 and 38% for diameter and height growth prediction, respectively. These models will prove to be quite useful for understanding the interaction of weather and silviculture in the Pacific Northwest and refining the precision of future growth model projections.     

Branch mortality and potential litterfall from Douglas-fir trees in stands of varying density

Forest floor characteristics influence nutrient cycling and energy flow properties of forest ecosystems, and determine quality of habitat for many forest plants and animals. Differential crown recession and crown development among stands of differing density suggest that an opportunity may exist to control the input of fine woody litter into the system by manipulating stand density. The objective was to measure the rate of branch mortality among stands of differing density and to estimate the range in total per hectare necromass inputs. Although litter traps are reliable for estimating per hectare rates of litterfall, branch mortality dating on sectioned stems uniquely allows assessment of several other litterfall components: (1) individual tree contributions to total litterfall; (2) the amount of branch material released by mortality, regardless of whether the branches are shed to the forest floor; (3) the distribution of basal diameters characterizing the litterfall from a given tree and stand. Twenty-four trees were felled and sectioned on permanent plots that were part of a silvicultural study of stand density regimes in Douglas-fir (Pseudotsuga menziesii (Mirbel) Franco.). Whorl branches were dissected out of bole sections to determine the dates of mortality, and a branch biomass equation was applied to estimate potential rate of litterfall. Periodic annual rates were expressed in four ways: (1) number of branches per tree; (2) mass of branches per tree; (3) mass of branches per unit of crown projection area; (4) mass of branches per hectare. For the growth periods investigated, larger trees and trees growing on denser plots tended to release a greater necromass through branch mortality. Average branch basal diameter generally decreased with increasing stand density. Annual branch mortality ranged from 33 to 430 g m⁻² crown projection area for individual trees, and from 236 to 1035 kg ha⁻¹ for individual plots. These rates approached the low end of the range of previously published fine litterfall rates for Douglas-fir. Rates on these plots were relatively low owing to the temporary delay in crown recession imposed by artificial thinning. A conceptual model of branch litter dynamics is presented to depict consistencies with crown development among stands managed under different density regimes.     

Modeling the spatial structure of topical forests

The spatial structure of tropical forest stands under different management conditions was modeled as a series of different spatial point processes. Spatial patterns were first assessed by K-function analyses to help choose a point process appropriate for observed patterns. The homogenous Neyman–Scott process accurately described live tree distribution in clear cut areas, where tree patterns tended to be aggregated. Parameters were estimated by minimizing Diggle's modified least squares criterion, and goodness-of-fit was assessed by comparison to confidence envelopes constructed by Monte Carlo simulation. Parameter estimates can be interpreted to help understand the ecological processes influencing re-colonization of disturbed areas. The inhomogeneous Poisson process was investigated for simulating the spatial pattern of ingrowth trees in lower canopy strata. The intensity function of this process was inversely proportional to variables representing canopy density. As assessed by Monte Carlo generation of confidence envelopes, the inhomogeneous Poisson process successfully portrayed the influence of canopy structure on understory plant distribution in most stands. Tree mortality was modeled as a thinning process in which the probability of individual tree mortality was conditional on subject tree attributes and competitive environment. The thinning function took the form of a generalized linear model with a binomial error distribution and logit link function. In most stands, tree neighborhood variables were powerful predictors of mortality, but they were not important predictors in all plots. This suggests that the surrounding forest structure of a subject tree has considerable influence on its morality, but competition is not the sole cause of tree morality in tropical forests.