Utilizing the accuracy of estimated breeding values to improve selection response

SUMMARY: Stochastic simulation was used to evaluate the increase in selection response by incorporating accuracies of estimated breeding values (ebvs) in an index to form indexed breeding values (ibvs). Simulations were made using a standard population with a selected proportion of 5%, with 10 000 selection candidates and an average accuracy of breeding value determination, r? = 0.4 with variance, σ(r) (2) = 0.075(2) . In the standard population, candidates selected on ibvs showed an 8.4 % increase in average true breeding values (tbvs) compared to selection using ebvs. Using the same standard population, but changing the proportion selected to 1.0 % and 10 %, the relative increase in the average tbvs from ibv selection was 13.5 % and 5.5 % respectively. Similarly, changing r? to 0.22, 0.32 and 0.55, the relative increase from ibv selection was 48 %, 19 % and 1.3 % respectively. As σ(r) was changed to 0.025 and 0.125, the relative increase from ibv selection was 0.6 % and 24 % respectively. In general, the average accuracy in candidates chosen for selection using ibvs was lower than that from selection using ebvs. In the standard population the accuracy was 0.38 from ibv selection and 0.43 from ebv selection. As a result the increase in inbreeding will be lower with ibv than with ebv selection. ZUSAMMENFASSUNG: Verwendung von Genauigkeiten gesch?tzter Zuchtwerte zur Verbesserung des Selektionserfolges Durch stochastische Simulation wurde Steigerung des Selektionserfolges durch Einschlu? von Genauigkeiten gesch?tzter Zuchtwerte (ebvs) in einen Index indizierter Zuchtwerte (ibvs) untersucht. Simulationen wurden mit einer Standardpopulation 5% selektierter von 10 000 Kandidaten und einer durchschnittlichen Genauigkeit der Zuchtwertsch?tzung r = 0.4; σ(r) (2) = 0.075(2) durchgeführt. In der Standardpopulation hatten Kandidaten, mit ibvs selektiert, eine Steigerung des durchschnittlichen wahren Zuchtwertes (tbvs) von 8.4 % verglichen mit Selektion auf ebvs-Basis. Bei Verwendung derselben Standardpopulation, aber Remontierung von 1 % bzw. 10 %, war der relative Zuwachs im durchschnittlichen tbvs bei ibvs-Selektion 13.5 und 5.5%. Die relative Zunahme von der ibvs-Selektion, mit r von 0.22, 0.32 oder 0.55, war 48 %, 19 % und 1.3 %. Bei Ver?nderungen von σ(r) auf 0.25 und 0.125 betrug die relative Zunahme 0.6 und 24 %. Im allgemeinen waren die durchschnittlichen Genauigkeiten bei Selektionskandidaten auf der Basis von ibvs geringer als bei Verwendung von ebvs. In der Standardpopulation waren diese Genauigkeiten 0.38 bei ibvs und 0.43 bei ebvs. Daher sollte die Zunahme der Inzucht mit ibvs geringer sein als mit ebvs.     

Persistence of Salmonella Typhimurium DT120 in abattoir paddocks holding sheep

In the summer of 1999 there was an outbreak of Salmonella Typhimurium DT120 in people in the north of England which was unusual in being sensitive to antimicrobial drugs. The outbreak was linked to mutton and lamb from a local abattoir, and attention focused on four holding paddocks used to retain sheep before slaughter. In November 1999, samples of soil and faeces were taken from these paddocks and samples of faeces were taken from the concrete race leading from them. Salmonella Typhimurium was isolated from 59 of the 100 samples. Between January 2000 and October 2000 seven visits were made to the abattoir at each of which 100 samples were taken from the paddocks and concrete race and examined for the presence of Salmonella. The paddocks remained heavily contaminated with S Typhimurium DT120 until April when there was a marked reduction in the recovery of the organism. By June the contamination was minimal and by August it had disappeared, and the organism was not recovered in September or October.     

The role of European starlings in the spread of coccidia within concentrated animal feeding operations

To investigate the relationship between European starlings and bovine coccidiosis we collected samples from European starlings, cattle feed bunks, cattle water troughs, and cattle feces within concentrated animal feeding operations (CAFOs). These samples were screened for coccidia spp. to investigate (i) the prevalence of coccidia in starlings using CAFOs; (ii) if there is a relationship between bovine coccidiosis and starling numbers; (iii) if coccidia contamination of cattle feed and water is related to the number of starlings observed on CAFOs. Coccidia belonging to the genus Eimeria were detected in cattle feces and one water sample but no Eimeria spp. were detected in European starlings or cattle feed. However, many European starling samples were positive for Isospora. Starling use of CAFOs did not appear to be associated with coccidia spp. shedding by cattle and there was no correlation between starling numbers and contamination of cattle feed and water, suggesting that starling do not contribute to the amplification and spread of Eimeria in CAFOs.     

A Burkholderia pseudomallei toxin inhibits helicase activity of translation factor eIF4A

The structure of BPSL1549, a protein of unknown function from Burkholderia pseudomallei, reveals a similarity to Escherichia coli cytotoxic necrotizing factor 1. We found that BPSL1549 acted as a potent cytotoxin against eukaryotic cells and was lethal when administered to mice. Expression levels of bpsl1549 correlate with conditions expected to promote or suppress pathogenicity. BPSL1549 promotes deamidation of glutamine-339 of the translation initiation factor eIF4A, abolishing its helicase activity and inhibiting translation. We propose to name BPSL1549 Burkholderia lethal factor 1.     

Use of a three-drill-tract technique for arthrodesis of the distal tarsal joints in horses with distal tarsal osteoarthritis: 54 cases (1990-1999)

OBJECTIVE: To assess the long-term clinical outcome of horses with distal tarsal osteoarthritis (OA) in which a 3-drill-tract technique was used to induce arthrodesis of the affected joints, identify any preoperative or operative factors associated with outcome, and describe any complications associated with the technique. DESIGN: Retrospective study. ANIMALS: 54 horses. PROCEDURE: Medical records were reviewed for information on signalment, use, history, physical and lameness examination findings, surgical technique, and postoperative care. Radiographs were examined, and severity of OA was graded. Follow-up information was obtained through telephone interviews with owners at least 13 months after the procedure. RESULTS: 32 (59%) horses had a successful outcome, 6 (11%) improved but were not sound after surgery, and 16 (30%) did not improve following surgery. Outcome was negatively associated with the previous use of intra-articular injections. Few postoperative complications were evident. CONCLUSIONS AND CLINICAL RELEVANCE: Results suggest that distal tarsal OA in horses can be successfully treated by means of distal tarsal arthrodesis with a 3-drill-tract technique. Horses with advanced distal tarsal OA are likely to have poorer outcomes, and the procedure will likely be of minimal benefit in horses with concomitant causes of hind limb lameness prior to surgery and in horses with preexisting proximal intertarsal joint disease.     

Precursors to damascenone: synthesis and hydrolysis of isomeric 3,9-dihydroxymegastigma-4,6,7-trienes

A series of four isomeric 3,9-dihydroxymegastigma-4,6,7-trienes, 8, has been prepared. The (3S,6R,9S) isomer of 8 proved to be identical to an isomer of this compound tentatively identified as an intermediate in the formation of damascenone from an allene triol. Each of the four isomers, when hydrolyzed independently of each other at pH 3.0 and 25 degrees C, produced product mixtures in which the major product was damascenone (1). Contrary to expectation, 3-hydroxydamascone (5) was not observed in any of the hydrolyses. Consequently, the mechanism of formation of damascenone proposed earlier requires modification. In each hydrolysis, the product mixtures showed the presence of a second isomer of 8, produced by epimerization during hydrolysis. Chiral analysis on a Cyclosil B column revealed that this epimerization was occurring at C(3) in each of the hydrolyses.