Genetical relationships between reactions to bacterial leaf spot,yellow mosaic and Cercospora leaf spot diseases in mungbean (Vigna radiata)

Summary Studies on the inheritance pattern of bacterial leaf spot (BLS), yellow mosaic (YM) and Cercospora leaf spot (CLS) reactions in crosses of BLS and YM resistant/tolerant but CLS susceptible × CLS resistant but BLS and YM susceptible parents indicated that resistances to BLS and CLS were governed by single dominant genes, whereas YM tolerance was a monogenic recessive character. The studies also indicated that these three genes were inherited independently. The simple inheritance pattern and independent assortment of the genes governing resistance/tolerance to these diseases suggest that the usual breeding methods will be adequate to develop multi-disease resistant mungbean cultivars.Paper XII in the series Studies on resistance in crops to bacterial diseases in India.     

Characterization of the long-term immune response to vaccination against Mycobacterium avium subsp. paratuberculosis in Danish dairy cows

Vaccination of cattle against Mycobacterium avium subsp. paratuberculosis (MAP) provides partial protection by delayed shedding of MAP and reduced numbers of clinically affected animals. The duration of vaccine induced immune response is not known. The primary objective of this study was therefore to characterize the long-term effect of whole-cell based vaccination against MAP on the immune response. A secondary objective was to evaluate whether immunodiagnosis of MAP and Mycobacterium bovis infections is affected by MAP vaccination. Two studies were performed: (1) A retrospective longitudinal study including 895 vaccinated and 2526 non-vaccinated dairy cows in 9 Danish dairy herds aiming at characterizing the long-term antibody-response to vaccination; and (2) a cross-sectional study of responses in the IFN-γ assay carried out in 140 vaccinated animals in two herds to evaluate the effect of vaccination on the cell-mediated immune response and to evaluate a possible interference with the diagnosis of M. bovis infections. The results showed that 37% of samples from vaccinated animals and 5% of samples from non-vaccinated animals, respectively, were test positive in the milk antibody ELISA. The prevalence of antibody responses of the vaccinated animals was relatively constant from 2 to 6 years of age, but decreased in older animals. Among the 140 vaccinated animals 88% tested positive with the IFN-γ test to johnin PPD and 50% responded to PPDb with IFN-γ production above a similar cut-off. Although Denmark is free of M. bovis, two of the vaccinated animals responded with higher IFN-γ levels when cultured with PPDb compared to PPDa. In conclusion, immunization with whole-cell MAP vaccines elicits both humoral and cell-mediated immune reactions, which may interfere with surveillance and diagnosis of both MAP and M. bovis infections using currently available tests.     

Longitudinal study comparing the dynamics of Clostridium difficile in conventional and antimicrobial free pigs at farm and slaughter

Clostridium difficile is the leading cause of nosocomial diarrhea in humans and a major cause of enteritis in neonatal piglets, foals and calves. The aim of this longitudinal study was to determine and compare the prevalence, antimicrobial susceptibility, and toxinotype profiles of C. difficile isolated from pigs and their environment in the indoor conventional and outdoor antimicrobial free (ABF) production systems. Ten conventional and eight ABF cohorts of 35 pigs each and their environment were sampled at different stages of production at farm and slaughter. C. difficile prevalence in pigs was highest at the farrowing stage in both conventional (34%, 120/350) and ABF (23%, 56/244) systems, and decreased with age. This reduction in C. difficile prevalence in pigs at later stages of production mirrored the decreased prevalence in the farm environment. At slaughter, C. difficile was isolated at a low frequency from the carcasses and processing environment in both production systems. All but three isolates were resistant to ciprofloxacin (99%, 505/508), while 1.0% (5/508) and 6.0% (23/508) of isolates exhibited resistance to tetracycline and erythromycin, respectively. Toxinotype V (tcdA(+)tcdB(+)) was the predominant strain identified in both systems (conventional: 94%, 376/401; ABF: 82%, 88/107), while the rest were toxinotype XIII (tcdA(+)tcdB(+)). To conclude, we isolated antimicrobial resistant C. difficile regardless of antimicrobial use on the farm. Based on the phenotypic and genotypic similarity of C. difficile isolated in this study, we conclude that the unique production practices employed in conventional and ABF production systems have no impact on the pathogen population.     

Design standards for experimental and field studies to evaluate diagnostic accuracy of tests for infectious diseases in aquatic animals

Design and reporting quality of diagnostic accuracy studies (DAS) are important metrics for assessing utility of tests used in animal and human health. Following standards for designing DAS will assist in appropriate test selection for specific testing purposes and minimize the risk of reporting biased sensitivity and specificity estimates. To examine the benefits of recommending standards, design information from published DAS literature was assessed for 10 finfish, seven mollusc, nine crustacean and two amphibian diseases listed in the 2017 OIE Manual of Diagnostic Tests for Aquatic Animals. Of the 56 DAS identified, 41 were based on field testing, eight on experimental challenge studies and seven on both. Also, we adapted human and terrestrial‐animal standards and guidelines for DAS structure for use in aquatic animal diagnostic research. Through this process, we identified and addressed important metrics for consideration at the design phase: study purpose, targeted disease state, selection of appropriate samples and specimens, laboratory analytical methods, statistical methods and data interpretation. These recommended design standards for DAS are presented as a checklist including risk‐of‐failure points and actions to mitigate bias at each critical step. Adherence to standards when designing DAS will also facilitate future systematic review and meta‐analyses of DAS research literature.     

Comparative Performance of Rice with System of Rice Intensification (SRI) and Conventional Management using Different Plant Spacings

The System of Rice Intensification (SRI) reportedly enhances the yields of rice (Oryza sativa L.) through synergy among several agronomic management practices. This study was conducted to investigate the effects on rice plant characteristics and yield by comparing the plants grown with different methods of cultivation – SRI vs. recommended management practices (RMP) focusing on the impact of different plant spacings. Performance of individual hills was significantly improved with wider spacing compared with closer‐spaced hills in terms of root growth and xylem exudation rates, leaf number and leaf sizes, canopy angle, tiller and panicle number, panicle length and grain number per panicle, grain filling and 1000‐grain weight and straw weight, irrespective of whether SRI or RMP was employed. Both sets of practices gave their highest grain yield with the spacing of 20 × 20 cm; however, SRI yielded 40 % more than the recommended practice. At this spacing, canopies also had the highest leaf area index (LAI) and light interception during flowering stage. The lowest yield was recorded at 30 × 30 cm spacing under both the practices, as a result of less plant population (11 m^?2), despite improved hill performance. During the ripening stage, hills with wider spacing had larger root dry weight, produced greater xylem exudates, and transported these towards shoot at faster rates. These features contributed to the maintenance of higher chlorophyll levels, enhanced fluorescence and photosynthesis rates of leaves and supported more favourable yield attributes and grain yield in individual hills than in closely‐spaced plants. Moreover, these parameters further improved in SRI, apart from the enhanced percentage of effective tillers and showed substantial and positive impacts on grain yield (17 %) compared with recommended practice. In conclusion, wide spacing beyond optimum plant density, however, does not give higher grain yield on an area basis and for achieving this, a combination of improved hills with optimum plant population must be worked out for SRI.     

Assessment of biomass and net primary productivity of a dry tropical forest using geospatial technology

This study quantifies biomass, aboveground and belowground net productivity, along with additional environmental factors over a 2-3 year period in Barnawapara Sanctuary of Chhattisgarh, India through satellite remotesensing and GIS techniques. Ten sampling quadrates20×20, 5×5 and 1×1 m were randomly laid for overstorey (OS), understorey (US) and ground vegetation(GS), respectively. Girth of trees was measured at breast height and collar diameters of shrubs and herbs at 0.1 m height. Biomass was estimated using allometric regression equations and herb biomass by harvesting. Net primary productivity (NPP) was determined by Ssumming biomass increment and litter crop values. Aspect and slope influenced the vegetation types, biomass and NPP in different forests. Standing biomass and NPP varied from 18.6 to101.5 Mg ha^-1 and 5.3 to 12.7 Mg ha^-1 a^-1, respectively,in different forest types. The highest biomass was found in dense mixed forest, while net production recoded in Teak forests. Both were lowest in degraded mixed forests of different forest types. OS, US and GS contributed 90.4, 8.7and 0.7%, respectively, for the total mean standing biomass in different forests. This study developed spectral models for the estimation of biomass and NPP using Normalized Difference Vegetation Index and other vegetation indices.The study demonstrated the potential of geospatial tools for estimation of biomass and net productivity of dry tropical forest ecosystem.     

Cell wall polysaccharides from chalkumra (Benincasa hispida) fruit. Part I. Isolation and characterization of pectins

Pectic polysaccharides were obtained from chalkumra (Benincasa hispida) fruit by sequential extraction with ammonium oxalate (fraction BOX), dilute acid (fraction BHCl), and cold dilute alkali (fraction BOH). The highest yield of polysaccharides was obtained with oxalate and HCl. BOX was enriched in partly methyl-esterified galacturonic acid, whereas BHCl and BOH contained mostly galactose. All of the extracts showed similar elution patterns in size exclusion chromatography although the intrinsic viscosities (eta) were different (132 +/- 6, 100 +/- 5, and 285 + 10 mL/g for BOX, BHCl, and BOH, respectively). From fractionation by anion exchange chromatography, homogalacturonan (as seen from sugar analysis and Fourier transform infrared spectrum) accounted for more than half of BOX and 11% of BHCl. Methylation analyses and hydrolysis of BHCl with endo-beta-(1-->4)-d-galactanase showed the presence of beta-(1-->4)-d-galactan. The neutral galactan represented more than 76% of BHCl and approximately 40% of BOH. The other polysaccharides were complex galactans in BOH and an acidic arabinan (<1%) in BOX and BHCl.     

Inheritance of plant elongation ability at seedling stage in rice

Summary In a comparison of methods to study inheritance of plant elongation ability, 15-, 20-, 25-, 30-, and 35-day-old F₂ populations of a cross between Baisbish (floating variety) and IR42 (nonelongating semidwarf modern variety) of rice, (Oryza sativa L.) were subjected to 65 cm water depth for 7 days. Frequency distribution of plant height before and after submergence was obtained. Bimodal curves in 15-, 20- and 25-day-old populations gave good fits to 9:7 elongating: nonelongating plants, suggesting that elongation was due to two dominant complementary genes. Segregation in the 30-day-old population was not clear-cut. A seedling age of 20 days was subsequently chosen for further studies.Two F₂'s involving floating rice and a nonelongating semidwarf; four F₂'s involving floating rice and an elongating semidwarf; and two F₂'s involving elongating and nonelongating semidwarf parents were studied with 20-day-old seedlings in the same way. Floating rice combinations with nonelongating semidwarf parents as well as with elongating semidwarf parents segregated into 9:7 elongating: nonelongating ratio. It is possible that because elongating and nonelongating dwarf parents did not differ much in elongation ability at seedling age, their combination with floating rice parents provided similar segregation. The F₂ distributions for height in elongating and nonelongating dwarf cross combinations were continuous with one peak.Genetic constitution of parents proposed are Sd1 Sd1 El El for floating parents, sd1 sd1 El El for semidwarf elongating, and sd1 sd1 el el for dwarf nonelongating.     

Lysimeter study on the use of biodrainage to control waterlogging and secondary salinization in (canal) irrigated arid/semi-arid environment

The study describes the capacity of trees to control the rise in water table and thus prevent the formation of waterlogged soils and development of secondary salinization in canal irrigated areas. It was conducted in RCC lysimeters of 1.2 m dia. and 2.5 m depth filled with sandy loam alluvial soil (Typic Ustochrept), with provisions to maintain water table depth at 1, 1.5 and 2 m from the surface and groundwater salinity at 0.4, 3, 6, 9 and 12 dS m-1. The amount of water biodrained by eucalyptus (Eucalyptus tereticornis) and bamboo (Bambusa arundinacea) at the given water table depths and groundwater salinity levels was monitored over four years by daily measuring the water needed for maintaining the water table. The trees continued to absorb and transpire water throughout the year, the capacity being more in summer and rainy than that was in the winter season. The eucalyptus plant could biodrain 2880, 5499, 5518 and 5148 mm of water in the first, second, third and fourth year of study period, from non-saline groundwater and a water table depth of 1.5 m. The amount of water biodrained was more at 1.5 m as compared to 1 and 2 m water table depths. The biodrainage capacity of trees was significantly affected by the salinity of the groundwater. However, even at salinity of 12 dS m-1, the eucalyptus plant biodrained 53% of that under non-saline conditions. It was calculated that biodrainage could control water table rises upto 1.95, 3.48, 3.76 and 3.64 m in first, second, third and fourth year, respectively. The secondary salinity developed in the root zone, upto 45 cm depth, did not exceed 4 dS m-1 even at water table depth of 1 m with salinity of 12 dS m-1. The volume of water biodrained by bamboo increased with time and could control water table rises upto 1.09, 1.86, 2.46 and 2.96 m in first, second, third and fourth year of growth, respectively.This study indicates that due to high transpiration capacity and an ability to extract water from deeper layers containing saline groundwater, the trees can control the rise in water table in irrigation command areas and prevent the formation of waterlogged and eventually the saline wastelands.