Genome-wide association analysis for stripe rust resistance in spring wheat(Triticum aestivum L.) germplasm

Stripe rust is a continuous threat to wheat crop all over the world. It causes considerable yield losses in wheat crop every year. Continuous deployment of adult plant resistance(APR) genes in newly developing wheat cultivars is the most judicious strategy to combat this disease. Herein, we dissected the genetics underpinning stripe rust resistance in Pakistani wheat germplasm. An association panel of 94 spring wheat genotypes was phenotyped for two years to score the infestation of stripe rust on each accession and was scanned with 203 polymorphic SSRs. Based on D' measure, linkage disequilibrium(LD) exhibited between loci distant up to 45 c M. Marker-trait associations(MTAs) were determined using mixed linear model(MLM). Total 31 quantitative trait loci(QTLs) were observed on all 21 wheat chromosomes. Twelve QTLs were newly discovered as well as 19 QTLs and 35 previously reported Yr genes were validated in Pakistani wheat germplasm. The major QTLs were QYr.uaf.2 AL and QYr.uaf.3 BS(PVE, 11.9%). Dissection of genes from the newly observed QTLs can provide new APR genes to improve genetic resources for APR resistance in wheat crop.     

Soil amendments and seed priming influence nutrients uptake,soil properties,yield and yield components of wheat (Triticum aestivum L.) in alkali soils

The effects of soil amendments [i.e., control, gypsum, farmyard manure (FYM), and gypsum?+?FYM] and seed priming (i.e., unprimed, seed soaked in water for 10?hr prior to sowing, and seed soaked in 0.4% gypsum solution for 10?hr prior to sowing) were assessed on growth and yield of wheat (Triticum aestivum L.) crop in alkali soil in northwestern Pakistan. A split plot design was used, keeping priming methods in main plots and soil amendments in sub-plots. The results showed that the effects of soil amendments and seed priming on grain yield, straw yield, harvest index and number of spikes were significant but their interactive effect was non-significant. The highest crop yields and yield index were obtained with gypsum?+?FYM amendments, and seed priming with gypsum solution. The effect on seed emergence, plant height and number of grains per spike was, however, not significant. Grain yield increased by 104% in gypsum?+?FYM treatment over control and by 16.8% with seed primed in water, followed by 8.5% with priming in gypsum solution, as compared to non-priming. The weight of 1000 grains was significantly increased by 35% in gypsum?+?FYM treatment and by 15.8% in gypsum priming. The phosphorus (P) and potassium (K) content increased with soil amendments. Soil pH and gypsum requirement reduced significantly with soil amendments. The blend of gypsum and FYM has improved the properties of salt-affected soil and enhanced fertility for optimum production of wheat in addition to the beneficial effect of seed priming in gypsum solution on crop yield. Using these amendments could be ameliorative in removing the adverse effect of the salt-affected soils, rendering the soil a good medium for plant growth.     

Thermal,swelling and stability kinetics of chitosan based semi-interpenetrating network hydrogels

The present study is focused on studying the swelling kinetics, thermal and aqueous stabilities, and determination of various forms of water in the chitosan (CS) and polyacrylonitrile (PAN) blend and semi-interpenetrating polymer network (sIPN). CS/PAN blend hydrogel films were prepared by solution casting technique. The blend film with optimum swelling properties was selected for the synthesis of sIPN. CS in the blend was crosslinked with the vapors of Glutaraldehyde (GTA) to prepare sIPN. The fabricated CS/PAN blend and sIPN hydrogels films were characterized with Fourier transform infrared (FTIR), thermal gravimetric analysis (TGA) and field emission scanning electron microscope (FESEM). The kinetics of swelling, bound and unbound waters and aqueous stability were determined experimentally. FESEM showed good miscibility between CS and PAN, FTIR showed no chemical interaction between CS and PAN; however, it did show a doublet for the sIPN, TGA showed improved thermal stability and swelling kinetic followed second order kinetics. The degree of swelling of the sIPN hydrogels samples at room temperature varied from ~2200 % (with a fair degree of stability (~30 %)) to ~1000 % (with high degree of aqueous stability (43 %)) with increase in the crosslinking time. The calculated unbound water (W_UB) max., for the blend was 52.3 % whereas for the bound (W_B) the max., was 41.9 %. However, for sIPN hydrogel films, the W_UB water decreased (max. 21.0 %) where as the W_B increased (max. 52.0 %). The decrease in W_UB and increase in the W_B is attributed to the formation of a compact structure and increase in the contact area between the water and polymers in sIPN hydrogels due to the induction of new water contacting point in these hydrogel films, respectively.     

Inorganic and organic carbon dynamics in forested soils developed on contrasting geology in Slovenia—a stable isotope approach

Purpose

Soil carbon dynamics were studied at four different forest stands developed on bedrocks with contrasting geology in Slovenia: one plot on magmatic granodiorite bedrock (IG), two plots on carbonate bedrock in the karstic-dinaric area (CC and CD), and one situated on Pleistocene coalluvial terraces (FGS).

Materials and methods

Throughfall (TF) and soil water were collected monthly at each location from June to November during 2005–2007. In soil water, the following parameters were determined: T, pH, total alkalinity, concentrations of Ca²⁺ and Mg²⁺, dissolved organic carbon (DOC), and Cl^? as well as δ¹³C_DIC. On the other hand, in TF, only the Cl^? content was measured. Soil and plant samples were also collected at forest stands, and stable isotope measurements were performed in soil and plant organic carbon and total nitrogen and in carbonate rocks. The obtained data were used to calculate the dissolved inorganic carbon (DIC) and DOC fluxes. Statistic analyses were carried out to compare sites of different lithologies, at different spatial and temporal scales.

Results and discussion

Decomposition of soil organic matter (SOM) controlled by the climate can explain the ¹³C and ¹⁵?N enrichment in SOM at CC, CD, and FGS, while the soil microbial biomass makes an important contribution to the SOM at IG. The loss of DOC at a soil depth of 5 cm was estimated at 1 mol m^?2 year^?1 and shows no significant differences among the study sites. The DOC fluxes were mainly controlled by physical factors, most notably sorption dynamics, and microbial–DOC relationships. The pH and pCO₂ of the soil solution controlled the DIC fluxes according to carbonate equilibrium reactions. An increased exchange between DIC and atmospheric air was observed for samples from non-carbonate subsoils (IG and FGS). In addition, higher δ¹³C_DIC values up to ?19.4?‰ in the shallow soil water were recorded during the summer as a consequence of isotopic fractionation induced by molecular diffusion of soil CO₂. The δ¹³C_DIC values also suggest that half of the DIC derives from soil CO₂ indicating that 2 to 5 mol m^?2 year^?1 of carbon is lost in the form of dissolved inorganic carbon at CC and CD after carbonate dissolution.

Conclusions

Major difference in soil carbon dynamics between the four forest ecosystems is a result of the combined influence of bedrock geology, soil texture, and the sources of SOM. Water flux was a critical parameter in quantifying carbon depletion rates in dissolved organic and inorganic carbon forms.

     

Growth and fatty acid composition of sesame (<Emphasis Type="Italic">Sesamum indicum</Emphasis> L.) genotypes as influence by planting dates and nitrogen fertilization in semiarid region of Northwest,Pakistan

A field experiment was conducted on silty clay loam soil in the years 2011–2012. Two sesame (Sesamum indicum L.) cultivars (Local Black and Local White) were evaluated using various 3 different sowing dates (20th June, 10th and 30th July) and four agrotechnical level (0, 40, 80 and 120 kg N ha^–1) at New Developmental Farm The University of Agriculture, Peshawar, Pakistan. The objective of this study was to evaluate the effects of sowing dates on growth, yield and oil fatty acid composition of two sesame cultivars grown under different nitrogen fertilization. Results showed that cv. Local Black was characterized by significantly higher content of oil (47%), seed yield (696 kg ha^–1) and oil yield (335 kg ha^–1) while cv. Local White had higher palmitic acid (8%) and linoleic acid (38.7%). Yield and its main components were positively affected by the earlier sowing date. With regard to fatty acid composition, a decrease in oleic and stearic acid and an increase in linoleic and palmitic acid were observed. At early sowing, oleic and palmitic acid decreased whereas linoleic and stearic acid increased. The decrease in the oleic/linoleic acid ratio observed at early sowing, suggests a possible role of temperature on the activity of oleate desaturase in the developing seeds. Intensive technology of cultivation (120 kg N ha^–1), compared to the economical technology (40 kg N ha^–1), significantly increased the seed yield of both sesame cultivars. This was due to higher number of branches, Capsules m^–2, capsules plant^–1, seeds capsule^–1 and 1000 seed weight (g). The intensive technology of cultivation had a beneficial effect on the content of palmitic acid, linolenic acid and oleic acid in sesame seed.     

Soil C and N dynamics and maize (Zea may L.) yield as affected by cropping systems and residue management in North-western Pakistan

This paper presents the results of irrigated rotation experiment, conducted in the North West Frontier Province (NWFP), Pakistan, during 1999–2002 to evaluate effects of residues retention, fertilizer N and legumes in crop rotation on yield of maize (Zea mays L.) and soil organic fertility. Chickpea (Cicer arietinum L) and wheat (Triticum aestivum L) were grown in the winters and mungbean (Vigna radiata) and maize in the summers. Immediately after grain harvest, above-ground residues of all crops were either completely removed (−residue), or spread across the plots and incorporated by chisel plough by disc harrow and rotavator (+residue). Fertlizer N rates were nil or 120 kg ha⁻¹ for wheat and nil or 160 kg ha⁻¹ for maize. Our results indicated that post-harvest incorporation of crop residues significantly (p < 0.05) increased the grain and stover yields of maize during both 2000 and 2001. On average, grain yield was increased by 23.7% and stover yield by 26.7% due to residue incorporation. Residue retention also enhanced N uptake by 28.3% in grain and 45.1% in stover of maize. The soil N fertility was improved by 29.2% due to residue retention. The maize grain and stover yields also responded significantly to the previous legume (chickpea) compared with the previous cereal (wheat) treatment. The legume treatment boosted grain yield of maize by 112% and stover yield by 133% with 64.4% increase in soil N fertility. Similarly, fertilizer N applied to previous wheat showed considerable carry over effect on grain (8.9%) and stover (40.7%) yields of the following maize. Application of fertilizer N to current maize substantially increased grain yield of maize by 110%, stover yield by 167% and soil N fertility by 9.8% over the nil N fertilizer treatment. We concluded from these experiments that returning of crop residues, application of fertilizer N and involvement of legumes in crop rotation greatly improves the N economy of the cropping systems and enhances crop productivity through additional N and other benefits in low N soils. The farmers who traditionally remove residues for fodder and fuel will require demonstration of the relative benefits of residues return to soil for sustainable crop productivity.     

Relationship between in vitro production of auxins by rhizobacteria and their growth-promoting activities in Brassica juncea L.

Rhizobacteria were isolated from the rhizosphere of different Brassica species and assayed for their ability to produce auxins in vitro. The isolates varied greatly in their potential for auxin production (ranging from 0.33 to 11.40 µg ml^-1). L-Tryptophan (an auxin precursor) addition to the media increased the auxin production by several fold. Based upon in vitro auxin production and growth promotion of B. juncea seedlings caused by various isolates under gnotobiotic conditions, promising isolates were selected and tested in pot trial to observe their effects on growth, yield and oil content of the same Brassica species. Results showed that seed inoculation with different isolates of rhizobacteria significantly increased plant height (up to 56.5%), stem diameter (up to 11.0%), number of branches (up to 35.7%), number of pods per plant (up to 26.7%), 1,000-grain weight (up to 33.9%), grain yield (up to 45.4%) and oil content (up to 5.6%) over the uninoculated control. Isolate S54 gave the most promising and consistent results. Highly significant correlations between L-TRP-derived auxin production by plant growth-promoting rhizobacteria (PGPR) in vitro and grain yield (r =0.77^**), number of pods (r =0.78^**) and number of branches per plant (r =0.77^**) of B. juncea were found. It was hypothesized that these PGPR may influence the growth and yield of inoculated plants by production of auxins in the rhizosphere of inoculated plants from the L-TRP present in the root exudates, although other mechanisms of action might have also contributed.     

Responses of energy balance, physiology, and production for transition dairy cows fed with a low-energy prepartum diet during hot season

Twenty multiparous Chinese Holstein dairy cows calving in hot summer (S group), were compared with 20 similar control cows calving in cool autumn (C group). Diets were the same for both groups; prepartum diets had relatively low energy density. Average temperature–humidity index was 76.5 and 53.0 in summer and autumn, respectively. S group cows had significantly higher rectal temperatures (39.6 vs. 39.0 °C) and respiration rates (79.0 vs. 31.3 breaths/min) than C group, and consumed less feed (prepartum 8.0 vs. 12.3 kg/day, postpartum 16.3 vs. 21.2 kg/day). Calculated energy balance (EB) was ?7.98 vs. ?5.15 Mcal/day for S group prepartum and postpartum, respectively. In contrast, EB was 1.36 vs. ?2.03 Mcal/day for C group prepartum and postpartum, respectively. S group produced significantly less milk than C group by 15.4 % (5.2 kg/day) and 26.8 % (10.2 kg/d) for milk yield and energy-corrected milk, respectively. Percentages of milk fat (3.28 vs. 4.29 %), protein (3.08 vs. 3.33 %), and solids-not-fat (8.46 vs. 8.78 %) were significantly lower for S group. Milk urea nitrogen (19.54 vs. 13.31 mg/dL) was significantly higher in S group. Significantly lower feed efficiency was observed in S group (1.56 vs. 1.66). During the entire transition period, S group had significantly lower circulating glucose levels. S group had significantly higher levels of nonesterified fatty acids (NEFA) prepartum, but after 14 days in milk, NEFA was significantly lower. We conclude that increasing dietary energy density during transition period (especially prepartum) is necessary to minimize adverse effects of hot season.     

Novel and simple approach using synthesized nickel nanoparticles to control blood-sucking parasites

The present study was on assessment of the anti-parasitic activities of nickel nanoparticles (Ni NPs) against the larvae of cattle ticks Rhipicephalus (Boophilus) microplus and Hyalomma anatolicum (a.) anatolicum (Acari: Ixodidae), fourth instar larvae of Anopheles subpictus, Culex quinquefasciatus and Culex gelidus (Diptera: Culicidae). The metallic Ni NPs were synthesized by polyol process from Ni-hydrazine as precursor and Tween 80 as both the medium and the stabilizing reagent. The synthesized Ni NPs were characterized by Fourier transform infrared (FTIR) spectroscopy analysis which indicated the presence of Ni NPs. Synthesized Ni NPs showed the X-ray diffraction (XRD) peaks at 42.76°, 53.40°, and 76.44°, identified as 1 1 1, 2 2 0, and 2 0 0 reflections, respectively. Scanning electron microscopy (SEM) analysis of the synthesized Ni NPs clearly showed that the Ni NPs were spherical in shape with an average size of 150 nm. The Ni NPs showed maximum activity against the larvae of R. (B.) microplus, H. a. anatolicum, A. subpictus, C. quinquefasciatus and C. gelidus with LC₅₀ values of 10.17, 10.81, 4.93, 5.56 and 4.94 mg/L; r² values of 0.990, 0.993, 0.992, 0.950 and 0.988 and the efficacy of Ni-hydrazine complexes showed the LC₅₀ values of 20.35, 22.72, 8.29, 9.69 and 7.83 mg/L; r² values of 0.988, 0.986, 0.989, 0.944 and 0.978, respectively. The findings revealed that synthesized Ni NPs possess excellent larvicidal parasitic activity. To the best of our knowledge, this is the first report on larvicidal activity of blood feeding parasites using synthesized Ni NPs.     

Comparison of Iodide and Iodate Accumulation and Volatilization by Filamentous Fungi during Static Cultivation

Five common fungal strains, Cladosporium cladosporioides, Aspergillus clavatus, Penicillium citrinum, Fusarium oxysporum, and Alternaria alternata, were cultivated in presence of iodide and iodate to evaluate their efficiency in iodine biovolatilization and bioaccumulation. Our results suggest that iodide and iodate bioaccumulation by microscopic filamentous fungi is similar although the biological transformation into volatile iodine compounds is driven by various pathways resulting in higher volatilization efficiency of iodate. Thus, the mobilization of iodate by filamentous fungi is superior to iodide mobilization. Our paper is also the first to compare the iodide and iodate volatilization efficiency by microorganisms. Our results highlight the significant role of filamentous fungi in biogeochemistry of iodine, especially in formation of environmentally reactive volatile forms that may contribute to ozone layer destruction.