Bayesian comparison of test-day models under different assumptions of heterogeneity for the residual variance: the change point technique versus arbitrary intervals

Test‐day milk yields from Spanish Holstein cows were analysed with two random regression models based on Legendre polynomials under two different assumptions of heterogeneity of residual variance which aim to describe the variability of temporary measurement errors along days in milk with a reduced number of parameters, such as (i) the change point identification technique with two unknown change points and (ii) using 10 arbitrary intervals of residual variance. Both implementations were based on a previous study where the trajectory of the residual variance was estimated using 30 intervals. The change point technique has been previously implemented in the analysis of the heterogeneity of the residual variance in the Spanish population, yet no comparisons with other methods have been reported so far. This study aims to compare the change point technique identification versus the use of arbitrary intervals as two possible techniques to deal with the characterization of the residual variance in random regression test‐day models. The Bayes factor and the cross‐validation predictive densities were employed for the model assessment. The two model‐selecting tools revealed a strong consistency between them. Both specifications for the residual variance were close to each other. The 10 intervals modelling showed a slightly better performance probably because the change point function overestimates the residual variance values at the very early lactation.     

Can treatment of <Emphasis Type="Italic">Brachiaria decumbens</Emphasis> (signal grass) improve its utilisation in the diet in small ruminants?—a review

Brachiaria decumbens is an extremely productive tropical grass due to its aggressive growth habit and its adaptation to a varied range of soil types and environments. As a result of the vast availability, treated B. decumbens demonstrates as a promising local material that could be utilised as an improved diet for sheep and goats. Despite the fact that the grass significantly increases weight gains in grazing farm animals, there were many reports of general ill-thrift and sporadic outbreaks of photosensitivity in livestock due to the toxic compound of steroidal saponin found in B. decumbens. Ensiling and haymaking were found to be effective in removing toxin and undesirable compounds in the grass. Biological treatments using urea, activated charcoal, polyethylene glycol, and effective microorganisms were found to be useful in anti-nutritional factor deactivation and improving the nutritive values of feedstuffs. Besides, oral administration of phenobarbitone showed some degree of protection in sheep that fed on B. decumbens pasture. In this review, we aim to determine the effect of B. decumbens toxicity and possible treatment methods on the grass to be used as an improved diet for small ruminant.     

Genomic characterization of the first oral avian papillomavirus in a colony of breeding canaries (<Emphasis Type="Italic">Serinus canaria</Emphasis>)

Papillomaviruses are non-enveloped, DNA viruses that infect skin and mucosa of a wide variety of vertebrates, causing neoplasias or simply persisting asymptomatically. Avian papillomaviruses, with six fully sequenced genomes, are the second most studied group after mammalian papillomaviruses. In this study, we describe the first oral avian papillomavirus, detected in the tongue of a dead Yorkshire canary (Serinus canaria) and in oral swabs of the same bird and other two live canaries from an aviary in Madrid, Spain. Its genome is 8,071 bp and presents the canonical papillomavirus architecture with six early (E6, E7, E1, E9, E2, E4) and two late open reading frames (L1 and L2) and a long control region between L1 and E6. This new avian papillomavirus L1 gene shares a 64% pairwise identity with FcPV1 L1, so it has been classified as a new species (ScPV1) within the Ethapapillomavirus genus. Although the canary died after showing breathing problems, there is no evidence that the papillomavirus caused those symptoms so it could be part of the oral microbiota of the birds. Hence, future investigations are needed to evaluate the clinical relevance of the virus.     

Concentration variations of several ions in stream after a wildfire

In May 2006, a high intensity wildfire occurred in Songling forest region in Daxing＇an Mountains, China. The concentration changes of eight ions （K^＋, Na^＋, Ca^2＋, Mg^2＋, Cl^-, Br^-, NO3^- and SO4^2-） were measured in burned and tmbumed streams after fire from May to Oct., 2006. Results show that the most ions flux were higher in burned stream than that in unburned stream during the sampling period, and the greatest concentrations of most ions transported from burned stream occurred in July. After fire, the most amplitude chemical ion was Ca^2＋, whose average concentration was 5.50 mg·L^-1 higher than that in unburned stream, and the total concentration of every chemical ion presents a trend Ca^2＋〉SO4^2- 〉Na^＋〉Mg^2＋〉NO3^- . The average concentrations of Ca^2＋, SO4^2- , Na^＋＇Mg^2＋,NO3^- showed an increase trend, but those of K^＋, Cl^- , Br had a decreased trend. SO4^2- had the largest loss among these anions, followed by NO3^-. Overall, the increase degree of cation was greater than that of anion after burning.     

Influence of Ammoniacal Copper Quaternary treatments on mechanical properties of blue-stained Lodgepole Pine wood

Three concentrations （2.8%, 2.0%, 1.2%） of Ammoniacal Copper Quaternary （ACQ） was selected to treat Lodgepole pine wood for evaluating ACQ treatment on mechanical properties of blue-stained wood. The bending modules of elasticity （MOE）, modules of rupture （MOR）, toughness and shearing strength parallel to grain on tangential surface, are tested according to the criteria GB1927-1943-91. Non-treated sample were also tested according to the same procedure. The results showed that the three groups specimen impregnated by different concentrations of ACQ solution met the AWPA standard 2003 of America （UC4A 6.4g/cm^3）. There were significant difference of toughness between treated wood and non-treated wood （p=0.01）, but there were no statistically significant differences among three concentrations in terms of toughness, and toughness of treated wood was approximately 20% lower than non-treated. MOR, MOE as well as sheafing strength parallel to grain were found to be not significantly different between treated wood and non-treated one, and there were no statistically significant difference among three concentrations of ACQ too. Toughness, MOR, MOE and sheafing strength parallel to grain increased with decrease of concentration of ACQ, but they were hardly affected by ACQ preservatives.     

Farm Forestry Prospects Among Some Local Communities in Rachuonyo District,Kenya

Deforestation and degradation of productive lands are serious threats to the sustainability of forestry/agricultural practices in Kenya. In the last two decades farm forestry (FF) has been promoted through pilot projects among local communities as an example of sustainable land use. However adoption of FF is limited outside the project locations because FF improvement measures focused mainly on biological (e.g. succession, biodiversity and traditional industrial timber production) and technical concerns (e.g. material input delivery such as providing free tree seedlings for field planting) rather than local values, and interests and the constraints facing farmers. This study examined the local farm priorities and constraints and the prospects for the wider implementation of farm-level tree planting in four communities in Rachuonyo District. Using interviews with 597 randomly selected household heads, the study assessed farmer’s production assets and activities, land tenure, priority tree species and the constraints to growing trees on farms. Results show that farm labour is represented by a young population, 56.3% under the age of forty. They are mainly engaged in small-scale mixed cropping integrated with multipurpose trees and some livestock. Tree products contribute about 32% to household cash income, more than any other source (agricultural products, labour sales, etc). Females were more often household heads and had considerable influence over productive activities, making them an important target group in FF development. Farmers preferred exotic tree species due to their ability to provide short-term cash income, fuel and shade. Farmers’ concerns included population pressure on limited farmlands and the problem of credit for agricultural inputs. Given the feeling of secured tenure arrangement and influence of tree products on the household economy, farmers are likely to invest more in efficient land uses such as FF if consideration is given to local priorities.     

Using leaf tip necrosis as a phenotypic marker to predict the presence of durable rust resistance gene pair <Emphasis Type="Italic">Lr34</Emphasis>/<Emphasis Type="Italic">Yr18</Emphasis> in wheat

Fifty wheat varieties along with Jupateco-73 and Morocco were studied for the expression of leaf tip necrosis (LTN), a trait linked with the durable rust resistance gene pair Lr34/Yr18. LTN was frequent (i.e., ≥6) in nine replications of a field experiment over 3 years in 17 genotypes, and the varieties were considered positive for LTN. In molecular analyses of these varieties, having relative severity values up to 78 for yellow rust and 45 for leaf rust, the 150-bp Lr34/Yr18-linked allele was consistently amplified. Expression of LTN in six of nine replications is an appropriate threshold for predicting the presence of Lr34/Yr18 gene pair, and genotypes can be selected using this trait.     

Dietary roughage sources affect lactating Holstein x Zebu cows under experimental conditions in Brazil: a meta-analysis

Tropical Animal Health and Production - To reduce costs, lactating cows are often fed a higher proportion of roughage and alternative feeds; however, such protocols may not lead to optimal milk...     

Rice <Emphasis Type="Italic">terpene synthase 18</Emphasis> (<Emphasis Type="Italic">OsTPS18</Emphasis>) encodes a sesquiterpene synthase that produces an antibacterial (<Emphasis Type="Italic">E</Emphasis>)-nerolidol against a bacterial pathogen of rice

Plant volatile compounds, including terpenes, are known to be involved in the rice defense system. In the present analysis of a terpene synthase, OsTPS18, in rice, we found that OsTPS18 was localized in the cytoplasm and synthesized the sesquiterpenes (E)-nerolidol and (E)-β-farnesene. The amounts of (E)-nerolidol and (E)-β-farnesene increased after jasmonic acid (JA) treatment. (E)-Nerolidol had significant antibacterial activity against Xanthomonas oryzae pv. oryzae (Xoo). These results suggest that (E)-nerolidol plays an important role in JA-induced resistance against Xoo and that it functions as an antibacterial compound in rice.