A real-time polymerase chain reaction assay for the detection of the myxozoan parasite Henneguya ictaluri in channel catfish

Proliferative gill disease (PGD), caused by the myxozoan parasite Henneguya ictaluri, is the most prevalent parasitic infection affecting commercial channel catfish (Ictalurus punctatus) aquaculture. There are currently no effective chemotherapeutic or biological control measures for PGD, which often peaks during the spring and fall when water temperatures are between 16-25 degrees C. The current diagnostic techniques of gross examination of gill clip wet mounts and histopathology are subject to false-negatives during the early stages of infection, and the quantifiable nature of end-point polymerase chain reaction (PCR) is subjective. Consequently, a rapid and more sensitive quantitative real-time PCR assay was developed for the detection of H. ictaluri during the early stages of infection in channel catfish. A 23 base-pair TaqMan probe was designed based on previously published H. ictaluri PCR protocols. The sensitivity of the assay was the equivalent of a single H. ictaluri actinospore, and in a pond challenge study, quantitative real-time PCR proved to be more sensitive than gross examination, microscopic examination of gill clip wet mounts, and histopathologic examination of gill tissue sections. Future applications of this assay will focus on developing methodologies to be used in conjunction with current pond-monitoring protocols to evaluate potential treatments and better manage this significant seasonal disease.     

Field variability and vulnerability index to identify regional precision agriculture opportunity

Innovations in precision agriculture (PA) have created opportunities to achieve a greater understanding of within-field variability. However, PA adoption has been hindered by uncertainty about field-specific performance and return on investment. Uncertainty could be better addressed by using innovative analyses that provide insights into variability among fields and across a region. The objectives of this research were to: (1) generate a within-field soil clay-content variability index (VI_c), (2) create a regional-scale growing-season precipitation variability index (VI_p), and (3) integrate the soil and weather indices with the USDA NRCS soil erosion vulnerability index (SVI) to produce a final index that incorporated both variability and vulnerability (VVI). The interpretation of the outcomes represented by each objective supports unique decisions that land managers may consider for reducing uncertainty about implementing PA. All indices were derived using publically available information for Missouri, USA. The VI_c was the ratio between the maximum and minimum clay content within fields. The VI_p was calculated as the standard deviation of the total growing-season precipitation from 2006 to 2015. Significant clustering of VI_c and VI_p were observed along the Missouri River corridor, northeast and northwest Missouri. Fields with high VVI were mostly in the claypan soil region of northeast Missouri, and along a portion of the Missouri River dominated by loess soils on steep slopes. Southeast Missouri displayed the greatest diversity in soil and weather variability, but had low vulnerability. This research could be used as a decision-support tool to aid producers and PA service and product providers in determining where PA opportunities exist.     

Molecular and biological characterisation of Cryptosporidium in pigs

OBJECTIVE: Genetic and biological characterisation of 12 isolates of Cryptosporidium from pigs and comparing them with Cryptosporidium isolates from humans and cattle. DESIGN: Cryptosporidium isolates from pigs were compared with those obtained from human and cattle using rDNA sequence analysis. The infectivity of two of the porcine isolates was determined in neonatal mice and the clinical history of the infected pigs recorded. RESULTS: Pig-derived isolates of Cryptosporidium exhibited two distinct genotypes; a porcine genotype and a bovine genotype, which is common to cattle and other livestock. The porcine genotype did not produce any infection in neonatal mice whereas the bovine genotype did. CONCLUSION: Two distinct genetically and biologically differing strains of Cryptosporidium appeared to be associated with acute diarrhoea in pigs. Whether Cryptosporidium was a primary or secondary pathogen is unclear but warrants further investigation. As the bovine genotype is known to infect humans, the results suggest that pigs can act as reservoirs of cryptosporidial infections for humans and other live-stock. The zoonotic potential of the pig-adapted genotype is uncertain and requires further study.     

Rain forest recovery from dieback,Queensland, Australia

We present a detailed account of a dieback episode in tropical rain forest. The dieback episode took place from 1977 to 1989 within a 0.5 ha long-term demography plot monitored for stem growth and mortality from 1975 to 2005. In total 770 m² of rain forest was affected causing 13 trees >10 cm diameter at breast height (dbh) to die, and others to sicken. The dead trees came from four families, though 14 families were represented in the area. Trees of the family Elaeocarpaceae suffered significantly higher mortality. Larger trees were significantly more likely to die than small trees, but smaller trees were more likely to recover. Recruitment to >10 cm dbh size class after dieback was greater in areas that had been affected, and in 2005 stem density and basal area were higher than in 1977, before the dieback episode started. There were no significant trends in biodiversity change between affected and non-affected parts of the plot. Dieback may have dramatic effects at onset but over the medium term its impact appears to be less serious. Longer term monitoring will permit re-evaluation of this observation in the future.     

Flux partitioning in an old-growth forest: seasonal and interannual dynamics

Turbulent fluxes of carbon, water and energy were measured at the Wind River Canopy Crane, Washington, USA from 1999 to 2004 with eddy-covariance instrumentation above (67 m) and below (2.5 m) the forest canopy. Here we present the decomposition of net ecosystem exchange of carbon (NEE) into gross primary productivity (GPP), ecosystem respiration (R(eco)) and tree canopy net CO(2) exchange (DeltaC) for an old-growth Douglas-fir (Pseudotsuga menziesii (Mirb.) Franco)-western hemlock (Tsuga heterophylla (Raf.) Sarg.) forest. Significant amounts of carbon were recycled within the canopy because carbon flux measured at the below-canopy level was always upward. Maximum fluxes reached 4-6 micromol m(-2) s(-1) of CO(2) into the canopy air space during the summer months, often equaling the net downward fluxes measured at the above-canopy level. Ecosystem respiration rates deviated from the expected exponential relationship with temperature during the summer months. An empirical ecosystem stress term was derived from soil water content and understory flux data and was added to the R(eco) model to account for attenuated respiration during the summer drought. This attenuation term was not needed in 1999, a wet La Ni?a year. Years in which climate approximated the historical mean, were within the normal range in both NEE and R(eco), but enhanced or suppressed R(eco) had a significant influence on the carbon balance of the entire stand. In years with low respiration the forest acts as a strong carbon sink (-217 g C m(-2) year(-1)), whereas years in which respiration is high can turn the ecosystem into a weak to moderate carbon source (+100 g C m(-2) year(-1)).