Seasonal and spatial bank habitat use by fish in highly altered rivers – a comparison of four different restoration measures

Pander J, Geist J. Seasonal and spatial bank habitat use by fish in highly altered rivers – a comparison of four different restoration measures.
Ecology of Freshwater Fish 2010: 19: 127–138. © 2009 John Wiley & Sons A/S
Abstract –  River regulations have resulted in substantial modifications of the characteristics and the diversity of stream ecosystems. Fish habitat use in the context of species life histories and temporal habitat dynamics are crucial for the development of sustainable measures of habitat restoration in degraded rivers. The objective of this study was to compare the effects of introducing four different in-stream structures (bank ripp-rapp, benched bank ripp-rapp, successively grown riparian wood and artificial dead wood, nine replicates each) on the seasonal fish community distribution in a heavily modified stream ecosystem. Species richness and diversity, fish biomass and density showed strong variation (i) between habitat types, (ii) among replicates of the same habitat type, and (iii) in different seasons. The current low abundance of historical widespread rheophilic and migratory fish species in the study stream suggests that technical bank habitat restoration measures are only of limited use for the restoration of highly specialised target species in conservation such as Barbus barbus and Chondrostoma nasus . However, introduction of particular artificial stream structures (in particular of artificial dead-wood fascines) was found to concentrate biomass and density of none-specialised fish species like Squalius cephalus , Alburnus alburnus , Gobio gobio or Rutilus rutilus .     

Shining a light on the loss of rheophilic fish habitat in lowland rivers as a forgotten consequence of barriers,and its implications for management

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Evaluation of the removal of impassable barriers on anadromous salmon and steelhead in the Columbia River Basin

Despite the popularity of barrier removal as a habitat restoration technique, there are few studies that evaluate the biological effects of restored stream crossings. An extensive post‐treatment study design was used to quantify fish populations (e.g. species, life stage, abundance) and habitat attributes (e.g. gradient, geomorphic channel units) at 32 culvert removal or replacement projects to determine their effectiveness in restoring habitat access for juvenile salmon, Oncorhynchus spp., and steelhead, O. mykiss (Walbaum), in the Columbia River Basin, USA. Anadromous fish (steelhead, Chinook salmon O. tshawytscha [Walbaum]) abundance, juvenile steelhead abundance and habitat conditions were not significantly different between paired reaches (i.e. upstream and downstream of former barrier sites), suggesting these sites are no longer full barriers to movement. This suggests that barrier removal projects on small Columbia Basin streams provide adequate fish passage, increased habitat availability and increased juvenile anadromous fish abundance immediately upstream of former barriers.     

The influence of environmental factors on the upstream movements of rheophilic cyprinids according to their position in a river basin

Throughout their lives, fish accomplish frequent movements between functional habitats that are often triggered by environmental signals. We aimed to determine if rheophilic cyprinids (barbel, Barbus barbus and chub Squalius cephalus), living in different places of the same river basin, may develop similar movement periodicities and react identically to environmental cues to carry out their spawning migration. We used the capture data of three modern fish passes that were monitored continuously during three consecutive years (2010 to 2012) in three rivers of the Meuse basin in Belgium. We captured 418 individuals at adult stage, and the capture number per species was greater (80%) in spring (during the spawning migration period). The spawning migration of the barbel occurred earlier (median = 122nd day of the year) and at lower temperatures (median = 14.5°C) in the lowland rivers compared to the upland river (140th day of the year and 18.4°C). For the barbel, migration initiation differed depending on the river but finished under similar environmental conditions. In contrast, for the chub, no significant difference between rivers was observed regarding spawning migration periodicity and environmental cues. Within the same river basin, rheophilic cyprinids demonstrate flexibility in their responses to environmental variables and may optimise the start date of migration to spawning grounds depending on their local environment and individual experiences. This phenomenon was more pronounced in the barbel, which has more specific ecological requirements.     

Re‐introduction of structurally complex wood jams promotes channel and habitat recovery from overwidening: Implications for river conservation

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River modification reduces climate resilience of brown trout (Salmo trutta) populations in Ireland

This study investigated interactions between eco‐hydromorphological state, riparian vegetation cover, water temperature and fish community composition in lowland rivers in Ireland. Physical habitat modification of study sites corresponded with degraded eco‐hydromorphological state (degree of ecological and physical modification) and reduced thermal buffering capacity (greater temperature fluctuation and increased frequency of extreme temperature events). This impact was reflected in the fish community, with a shift from a brown trout‐dominated (Salmo trutta L.) fish assemblage to predominance of the more thermally plastic minnow, Phoxinus phoxinus (L.), and stone loach, Barbatula barbatula (L.). Eco‐hydromorphological state may be a central factor affecting the ability of temperate rivers to resist temperature change in a warming climate and to maintain suitable conditions for salmonids and other cold‐water biota. Strategies aimed at climate change proofing of temperate rivers should focus on preserving or re‐establishing the eco‐hydromorphological processes that create habitat complexity and buffer stream temperature.     

Spatiotemporal ecology of juvenile Muskellunge (Esox masquinongy) and Northern Pike (Esox lucius) in upper St. Lawrence River nursery bays during their inaugural fall and winter

Understanding the spatial ecology of juvenile freshwater fish beyond summer months is an essential component of their life history puzzle. To this end, declines in the natural populations of sympatric Muskellunge (Esox masquinongy) and Northern Pike (Esox lucius) in the upper St. Lawrence River prompted study of spatiotemporal patterns and habitat requirements associated with earlier life stages of these congeneric, freshwater predators in fall and overwinter periods. Over 75 age-0 esocids were tagged and passively monitored using acoustic telemetry in four nursery embayments in fall and winter months from 2015 and 2017 months to elucidate spatiotemporal ecology and test hypotheses related to emigration. Presence, residency, space and habitat use were assessed and modelled against key environmental (i.e. water temperature and level) and biological (total length) covariates using mixed effect models. Muskellunge were found to spend more time in deeper, littoral regions with canopy-forming, submerged aquatic vegetation while Northern Pike aggregated in the deepest, highly vegetated region of their nursery embayment. Results suggest fish may exhibit transitionary movements in fall months and may span outwards into nearshore regions along the main river channel. Studies informing coastal restoration initiatives to increase Muskellunge production are encouraged to assess sympatric habitat use relative to prominent embayment structures and further explore depth partitioning by these young predators. With a substantial influence from water-level regulation on use of nursery habitat, future studies must work in concert with management plans aimed at producing more natural riverine cycles and thus increased recruitment of Esox species.     

Biodiversity values of remnant freshwater floodplain lagoons in agricultural catchments: evidence for fish of the Wet Tropics bioregion,northern Australia

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Microhabitat preferences of fish assemblages in the Udzungwa Mountains (Eastern Africa)

Environmental flow assessment (EFA) involving microhabitat preference models is a common approach to set ecologically friendly flow regimes in territories with ongoing or planned projects to develop river basins, such as many rivers of Eastern Africa. However, habitat requirements of many African fish species are poorly studied, which may impair EFAs. This study investigated habitat preferences of fish assemblages, based on species presence–absence data from 300 microhabitats collected in two tributaries of the Kilombero River (Tanzania), aiming to disentangle differences in habitat preferences of African species at two levels: assemblage (i.e. between tributaries) and species (i.e. species‐specific habitat preferences). Overall, flow velocity, which implies coarser substrates and shallower microhabitats, emerged as the most important driver responsible of the changes in stream‐dwelling assemblages at the microhabitat scale. At the assemblage level, we identified two important groups of species according to habitat preferences: (a) cover‐orientated and limnophilic species, including Barbus spp., Mormyridae and Chiloglanis deckenii, and (b) rheophilic species, including Labeo cylindricus, Amphilius uranoscopus and Parakneria spekii. Rheophilic species preferred boulders, fast flow velocity and deeper microhabitats. At the species level, we identified species‐specific habitat preferences. For instance, Barbus spp. preferred low flow velocity shallow depth and fine‐to‐medium substratum, whereas L. cylindricus and P. spekii mainly selected shallow microhabitats with coarse substrata. Knowledge of habitat preferences of these assemblages and species should enhance the implementation of ongoing and future EFA studies of the region.     

The local responses of aquatic ecosystems to adjacent grassland conservation: Can streams of dreams exist in a degraded riverscape?

1. Landscape homogenization and the removal of riparian areas have altered stream ecosystems worldwide. Numerous conservation programmes attempt to improve water quality and increase instream habitat heterogeneity to elicit desired biological responses. However, the effectiveness of many conservation efforts on isolated stream fragments remains unknown, especially in grassland regions.
2. The effects of grassland conservation practices and the re-establishment of riparian corridors in the James River basin, South Dakota (USA) on stream water quality, habitat availability and aquatic macroinvertebrate and fish assemblages were studied in an agriculturally dominated prairie landscape.
3. Grassland conservation efforts may have repaired riparian condition, reduced turbidity and created more diverse instream habitat complexes at conservation sites based on comparisons with paired reference reaches. Reference sites were relatively homogeneous, with prevalent siltation, bank erosion and disturbances to the riparian vegetation. Owing to significant riparian vegetation development, overhanging and aquatic vegetation, benthic detritus and woody materials were significantly more common at conservation reaches.
4. Restoration efforts that assume ‘if you (re-)build it, they will come’ (i.e. the ‘field of dreams’ hypothesis) underestimate other important barriers to biodiversity restoration in dynamic, grassland riverscapes. Although aquatic organisms in grassland ecosystems are adapted to rapidly inhabit available habitats, the development of niche space at conservation reaches did not directly result in colonization by aquatic life.
5. Grassland management actions did not address stream connectivity issues or overcome land use influences elsewhere in the riverscape that may govern the responses of aquatic macroinvertebrates and fish. Stream fragmentation and continuing, damaging land use patterns seemed to exceed the positive effects of restoring isolated stream reaches in these heavily degraded catchments. Catchment-scale management strategies that combine reach-level restoration actions with efforts to improve connectivity are likely to be more successful in degraded riverscapes.

     

Spatial arrangement and physical characteristics of structural woody habitat in a lowland river in south‐eastern Australia

• 1. The importance of structural woody habitat (SWH) as instream fish habitat in eastern Australia has been well documented. In response, many native fish restoration programmes are returning SWH to rivers where it had previously been removed. However, there is little information to direct the placement of this SWH within a river landscape.
• 2. Low‐level, high‐resolution aerial photographs were used to investigate the spatial pattern of SWH in the Murray River between Lake Mulwala and Tocumwal. It was found that SWH occurred in aggregations that were closely associated with eroding banks on meanders.
• 3. The physical characteristics of the SWH in these aggregations varied (basal diameter range 0.44–2.45 m, length range 1–44 m); however, small‐ to medium‐sized trees (basal diameter range 0.7–1.4 m, length range 5–20 m) were most common.
• 4. The association between eroding banks and SWH suggests that bank erosion may be an important determinant in the formation of SWH aggregations.

Copyright © 2004 John Wiley & Sons, Ltd.     

Larval and early juvenile fish dynamics in main channel and backwater lake habitats of the Illinois River ecosystem

The spatial and temporal complexity of large river ecosystems likely promotes biological diversity within riverine larval fish assemblages. However, the focus of most previous riverine studies of larval fish distribution has tended to concentrate mainly on backwater habitats. There has been less focus on the value of the main channel for larval fishes. We sampled two habitats types (three main channel sites and three backwater lakes) along 20 km of the Illinois River ecosystem during 2 years to compare the larval fish distribution along both spatial and environmental gradients between these habitats. Across the 2 years of this study, we found similar trends in the spatial and temporal distribution of larval fish, although there were some differences in densities between years. The relative abundance and size of many of the different fish taxa varied among habitats. Centrarchids, clupeids, poeciliids, cyprinids (excluding common carp) and atherinids were more abundant within backwater lake habitat. In contrast, common carp (Cyprinus carpio), sciaenids, moronids and catostomids were more abundant in main channel habitats. Furthermore, sciaenid and clupeid larvae captured in the backwater lake habitat were larger as the season progressed than those captured in the main channel. Our study suggests that larval fish show habitat specialisation, similar to adults, indicating that both the backwater lakes and the main channel are both important for larval fish and preserving the diversity of the fish assemblages in large floodplain rivers.     

Controls of local young-of-the-year fish species richness in flood plain water bodies: potential effects of habitat heterogeneity, productivity and colonisation–extinction events

Abstract –  This study reports on the relationships between young-of-the-year (YOY) fish species richness and landscape and local factors in 20 backwaters of the Seine River flood plain. Using multiple linear regression, we tested the importance of three types of variable for explaining total species richness (TSR), phytophil species richness (PSR) and lithophil species richness (LSR): (1) colonisation–extinction processes, (2) habitat heterogeneity and (3) productivity. At the local scale, no variables describing habitat heterogeneity correlated with TSR, PSR or LSR. Productivity was correlated only with TSR according to a polynomial model. In contrast, variables relating to the colonisation–extinction process correlated with TSR, PSR and LSR: TSR varied mainly with backwater size, which is a surrogate of extinction, whereas PSR and LSR correlated with the relative longitudinal position of backwaters and the size of their connection to the main channel. In conclusion, it seems that the total fish richness varies as a function of local factors, whereas the components of fish diversity are rather influenced by landscape factors.     

River damming drives population fragmentation and habitat loss of the threatened Danube streber (Zingel streber): Implications for conservation

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Incidence and timing of wild and escaped farmed Atlantic salmon (Salmo salar) in Norwegian rivers inferred from video surveillance monitoring

Run timing of escaped farmed Atlantic salmon Salmo salar vs. wild fish was compared by the use of video camera surveillance in 15 rivers over several years, covering 1600 km of the Norwegian coastline (from 58°N to 69°N). Annual runs of wild salmon varied among rivers from <200 fish to more than 10 000. During the surveillance period that for most rivers extended from late May to early October, larger‐sized salmon (fish ≥ 65 cm) generally entered the rivers earlier than small fish. The percentage of salmon identified as escaped farmed fish ranged from 0.1% to 17% across rivers with an average of 4.3%. Estimates of escapees are, however, assumed to represent minimum values because an unknown number of farmed fish passing the video cameras may have been misclassified as wild fish. By the use of a linear mixed model and generalised additive mixed models, it was found that the relationship between run timing and fish length differed significantly between farmed and wild salmon. While small‐sized farmed and wild fish (<65 cm) entered the river at about the same time, wild large salmon returned on average 1–2 weeks earlier than similarly sized escapees. The proportion of large‐sized farmed escapees also increased until late August and decreased thereafter. In contrast, there was a relatively constant and lower proportion of small‐sized escapees throughout the season. Within the surveillance period, there was no evidence of any exceptionally late runs of fish classified as escaped farmed salmon.     

Summer microhabitat use by adult and young‐of‐year snail darters (Percina tanasi) in two rivers

Ashton MJ, Layzer JB. Summer microhabitat use by adult and young‐of‐year snail darters (Percina tanasi) in two rivers. Ecology of Freshwater Fish 2010: 19: 609–617. © Published 2010. This article is a US Government work and is in the public domain in the USA. Abstract – We characterised microhabitat availability and use by adult and young‐of‐year (YOY) snail darters (Percina tanasi Etnier 1976 ) while snorkelling in the French Broad and Hiwassee rivers, TN, USA. Both age groups of snail darters disproportionately used most microhabitat variables compared to their availability. Snail darters primarily occupied moderately deep, swift water over gravel substrates with little macrophyte coverage and no silt. Univariate comparisons indicated that adult and YOY darters occupied different habitat, but there was no marked differences between principal components analysis plots of multivariate microhabitat use within a river. Although the availability of microhabitat variables differed between the French Broad and Hiwassee rivers, univariate means and multivariate plots illustrated that the habitats used were generally similar by age groups of snail darters between rivers. Because our observations of habitat availability and use were constrained to low flow periods and depths <1 m, the transferability of our results to higher flow periods may be limited. However, the similarity in habitat use between rivers suggests that our results can be applied to low‐normal flow conditions in other streams.     

Functional vs scenic restoration – challenges to improve fish and fisheries in urban waters

Abstract Two rehabilitation projects were compared to determine their feasibility for successfully improving habitat for fish in urban waters. The first re‐meandering project involved channel reconstruction in the Müggelspree upstream of Berlin to create an aesthetically pleasing, stable, meandering channel. The second project addressed a typical habitat bottleneck for fish found in urban waterways; that of nursery habitats lost due to river engineering works. Rehabilitated and control sites were sampled before and after in the Müggelspree and once in the urban Spree River. A total of 30 303 fish belonging to 27 species were collected. The fish assemblage was dominated by generalist species with 81% roach, Rutilus rutilus (L.), and perch, Perca fluviatilis L. Species diversity did not improve in either the rural or urban stretch. In the Müggelspree, the loss of riverine habitats was mirrored by significant declines in the densities of chub, Leuciscus cephalus (L.), ide, Leuciscus idus (L.), gudgeon, Gobio gobio (L.), rheophilic and lithophilic species. By contrast, densities of rheophilic species around the artificial structures created in the urban Spree River, although the main effect was an overwhelming increase in roach and perch. The results suggest that if underlying bottlenecks can be identified, artificial structures can provide functional fish habitat that replaces the natural equivalent in urban river stretches. Consequently, even the most heavily degraded waters provide opportunities to improve fish diversity and fisheries using artificial habitat structures.     

The significance of meandering channel morphology on the diversity and abundance of macroinvertebrates in a lowland river in Japan

• 1. Many rivers and streams across the world have been channelized for various purposes. Channel cross‐sections of meandering rivers are asymmetrical and have cross‐sectional diversity in their physical environment; cross‐sections of a channelized river are typically trapezoidal and have little cross‐sectional diversity, both in physical and ecological conditions. Several programmes to restore stream meanders have been undertaken to improve river ecosystems degraded by channelization. However, the association between diversification in the physical environment due to meander restoration and the macroinvertebrate community structure is poorly known.
• 2. This study of a lowland river in Japan assessed how the cross‐sectional diversity of the physical environment changed with restoration of a meander in a channelized river, and how the macroinvertebrate communities responded to the changes in physical habitat variation. Comparisons were made between the macroinvertebrate communities of a channelized reach, the restored meandering reach, and a natural meandering reach.
• 3. Natural meandering and restored meandering reaches showed higher cross‐sectional diversity in physical variables and total taxon richness across a reach than did the channelized reach. Almost all taxa observed in the natural and restored meandering reaches were concentrated in the shallowest marginal habitats near the banks. Shear velocity increasing with water depth had a negative association with macroinvertebrate density and richness.
• 4. This study demonstrated that the shallow river bed along the inside of bends formed point bars that provided a highly stable substrate, a suitable habitat for macroinvertebrates in a lowland river. It is concluded that meander restoration could be an effective strategy for in‐stream habitat restoration in lowland meandering rivers.

Copyright © 2007 John Wiley & Sons, Ltd.     

Habitat variability in young-of-the-year winter flounder, Pseudopleuronectes americanus, in Maine estuaries

The Magnuson-Stevens Fishery Conservation and Management Act defines essential fish habitat (EFH) as “the waters and substrate necessary to fish for spawning, breeding, feeding, and growth to maturity” and the protection of nursery areas has become a key element in US Federal fisheries management. Distribution and abundance by habitat for age-0, young-of-the-year (YOY) winter flounder, Pseudopleuronectes americanus, were compared for 28 Maine estuaries to help define essential fish habitat for this life history stage. The Maine coast was divided into three broad geographic zones based upon geological features and sampled over 5 consecutive years; during April–November of 2000 in the Mid-coast, in 2001 and 2002 along the Southwest coast and in 2003 and 2004 along the Eastern Maine coast. One beam trawl (2.0 m width, 3 mm mesh) sample was collected in one to four habitats in estuaries: eelgrass (Zostera marina), kelp (Laminaria longicruris), drift algae (Phyllophora sp.) and unvegetated sand/mud. Fish were sampled every 2 weeks, April–November 2000–2004. Abundance of YOY winter flounder was greatest in Mid-coast estuaries between Casco and Penobscot Bays and was significantly lower in Southwest and Eastern estuaries. Abundance was similar across all four habitats in Mid-coast estuaries in 2000. In the other years, YOY were found in higher abundance in eelgrass relative to other habitats. A logistic regression model based on nearshore habitat characteristics was developed to predict the distribution of this species along the three broad geological zones of the Maine coast with the physical and biological variables most important in discriminating between habitats with and without individual fish identified. This logistic regression model correctly classified winter flounder 72.4% of the time based on the year, zone, the physical habitat variables (temperature, salinity, depth) and the presence–absence of submerged aquatic vegetation (eelgrass, kelp or algae). These results indicate that the type of habitat most important to YOY winter flounder varies among estuaries and EFH for this species and life stage must be defined with care.