The use of foal and studbook traits in the breeding programmes of Finnhorse and Standardbred trotters

Genetic correlations for body measurements and subjectively scored traits between foals and studbook horses were estimated using bivariate linear mixed models. Observations for nine foal and eleven studbook traits in Finnhorses on 6529 foals and 6596 studbook horses and in Standardbred trotters on 3069 foals and 2112 studbook horses were available from the Finnish horse breeding shows. The number of sires with progeny in both foal and studbook data was 203 in Finnhorse and 145 in Standardbred trotters. Estimates of heritability for body measurements in foals and studbook horses using univariate models were high in both breeds (0.41-0.84). Heritability estimates for subjectively scored traits using univariate models were generally higher for foals (0.08-0.46) than for studbook horses (0.06-0.21) in both breeds. Genetic correlations between foals and studbook horses for body measurements were highly positive ranging from 0.74 to 0.96 in Finnhorses and from 0.79 to 0.99 in Standardbred trotters. Low to highly positive genetic correlations between foals and studbook horses for subjectively scored traits were obtained in Finnhorse trotters, whereas in Standardbred trotters genetic correlations for subjectively scored traits varied from moderately negative to highly positive. Higher estimates of heritability for foal traits and generally high genetic correlations between the foal and studbook traits indicate that an early selection for conformation traits would be efficient in the breeding programmes.     

Genetic correlations between competition traits and traits scored at breeding field-tests in Icelandic horses

Relationships between breeding field-test traits and competition traits were studied to investigate whether the latter could be usefully included in the genetic evaluation of Icelandic horses. The current method of genetic evaluation is based on records from breeding field-tests only. The breeding field-test data included 16 401 individual records of Icelandic horses evaluated in 11 countries during 1990–2005. Competition results included 18 982 records of 3790 horses competing in sport and gæðinga competitions in Iceland and Sweden during 1998–2004. In the breeding field-tests, eight conformation traits and eight riding ability traits were scored; height of withers was also recorded. These traits were analysed together with the competition traits tölt(comp), 4-gait, 5-gait and pace test, in bivariate analyses. Animal models were used; the fixed effects for breeding field-test traits included sex by age interaction and country by year interaction. For the competition traits the model included fixed effects of sex, age and event, and a random permanent environmental effect. Estimated heritabilities and genetic correlations for breeding field-test traits were consistent with earlier results; heritabilities ranged from 0.20 to 0.67, and moderate to high genetic correlations were estimated between many of the riding ability traits, and between riding ability traits and some conformation traits. The estimated heritabilities for competition traits were about 0.20, and genetic correlations between competition traits varied from − 0.12 to 1.00. In general, high genetic correlations were estimated between breeding field-test riding ability traits and competition traits. Moderately positive genetic correlations were found between some breeding field-test conformation traits and competition traits. Competition traits add information relating to the breeding goal of the Icelandic horse; they should therefore be added to genetic evaluation in future.     

Genetic and phenotypic parameters for conformation and yield traits in three Swiss dairy cattle breeds

This study presents genetic parameters for conformation traits and their genetic and phenotypic correlations with milk production traits and somatic cell score (SCS) in three Swiss dairy cattle breeds. Data on first lactations from Holstein (67 839), Brown Swiss (173 372) and Red & White breeds (53 784) were available. Analysed conformation traits were stature and heart girth (both in cm), and linear scores of body depth, rump width, dairy character or muscularity, and body condition score (only in Holstein). A sire model, with relationships among sires, was used for all breeds and traits and variance components were estimated using AS‐REML. Heritabilities for stature were high (0.6–0.8), and for the linear type traits ranged from 0.3 to 0.5, for all breeds. Genetic correlations with production traits (milk, fat and protein yield) and SCS differed between the dairy breeds. Most markedly, stronger correlations were found between SCS and some conformation traits in Brown Swiss and Red & White, indicating that a focus on a larger and more ‘dairy’ type in these breeds would lead to increased SCS. Another marked difference was that rump width correlated positively with milk yield traits in Holstein and Red & White, but negative in Brown Swiss. Results indicate that conformation traits generally can be used as predictors for various purposes in dairy cattle breeding, but may require specific adaptation for each breed.     

Genetic analysis of 'breeding field test status' in Icelandic horses

Genetic evaluation of Icelandic horses is currently based on results from breeding field tests where riding ability and conformation of the horses are evaluated over the course of 1-2 days. Only a small part of registered horses attend these field tests, and it can be assumed that these are not a random sample of the population. In this study, the trait test status was introduced, describing whether a horse was assessed in a breeding field test. This trait was analysed to find out whether it has a genetic variation and how it correlates genetically to other traits in the breeding goal. Breeding field test data included 39,443 mares born in Iceland in 1990-2001, of which 7431 were assessed in the period 1994-2007. The trait was defined in relation to age, gender and stud of horses. Variance and covariance components were estimated using the Markov Chain Monte Carlo method by applying the Gibbs sampler procedure in the DMU program. Three multivariate analyses were performed where the test status trait was analysed with breeding field test traits. Animal models and sire models were applied. Based on estimated heritabilities (0.51-0.67) and genetic correlations (0.00-0.87), the test status trait showed significant genetic variation and was strongly correlated to some traits. The test status trait reflects preselection in the breeding field test traits and should be included in the genetic evaluation to enhance the procedure, reduce selection bias and increase accuracy of the estimation.     

Genetic parameters for claw health and feet and leg conformation traits in Finnish Ayrshire cows

Genetic parameters for different claw disorders, overall claw health and feet and leg conformation traits were estimated for Finnish Ayrshire cows. The merged data set with records of claw health and feet and leg conformation traits consisted of 105 000 observations from 52 598 Finnish Ayrshire cows between 2000 and 2010. The binary claw health data and the linearly scored conformation data were analysed using an animal model and restricted maximum likelihood method by applying the statistical package ASReml. Binomial logistic models with mixed effects were used to estimate genetic parameters for sole haemorrhages, chronic laminitis, white‐line separation, sole ulcer, interdigital dermatitis, heel horn erosion, digital dermatitis, corkscrew claw and overall claw health. Estimated heritabilities for different claw disorders using a binomial logistic model ranged from 0.01 to 0.20. Estimated heritability for overall claw health using a binomial logistic model was 0.08. Estimated heritabilities for feet and leg conformation traits ranged from 0.07 to 0.39. The genetic correlations between claw health and feet and leg conformation traits ranged from ?0.40 to 0.42. All phenotypic correlations were close to zero. The moderate genetic correlation, together with higher heritability of feet and leg conformation traits, showed that RLSV (rear leg side view) is a useful indicator trait to be used together with claw trimming information to increase the accuracy of breeding values for claw health in genetic evaluation.     

Multi-trait animal model estimation of genetic parameters for linear type and gait traits in the Belgian warmblood horse

Genetic parameters for the height at withers, 27 linear type and six linear gait traits were estimated for the Belgian warmblood horse. Observations on 987 mares, mostly 3 years old, were analysed using a multi-trait animal model. The statistical model included appraiser, age and location (date × place of appraisal) as fixed effects. Genetic parameters were estimated using a canonical transformation and an expectation-maximization restricted maximum likelihood algorithm with an additional deceleration step. Estimates of heritability for the 33 linear traits were between 0.15 and 0.55. Heritability of the height at withers was 0.34 ± 0.06. Estimated genetic correlations ranged from −0.60 to 0.98 with an average SE of 0.10. The highest positive correlations were found among traits of walk and among traits of trot. Volume and the quality of legs were the most negatively correlated. Estimated genetic parameters indicated that the linear scoring system is a valuable tool to assess conformation. The full (co)variance matrix is now available for breeding value estimation to support selection for conformation and gaits.     

Genetic diversity in an indigenous horse breed: implications for mating strategies and the control of future inbreeding

The Franches-Montagnes is an indigenous Swiss horse breed, with approximately 2500 foalings per year. The stud book is closed, and no introgression from other horse breeds was conducted since 1998. Since 2006, breeding values for 43 different traits (conformation, performance and coat colour) are estimated with a best linear unbiased prediction (BLUP) multiple trait animal model. In this study, we evaluated the genetic diversity for the breeding population, considering the years from 2003 to 2008. Only horses with at least one progeny during that time span were included. Results were obtained based on pedigree information as well as from molecular markers. A series of software packages were screened to combine best the best linear unbiased prediction (BLUP) methodology with optimal genetic contribution theory. We looked for stallions with highest breeding values and lowest average relationship to the dam population. Breeding with such stallions is expected to lead to a selection gain, while lowering the future increase in inbreeding within the breed.     

Genetic parameters in Finnish blue fox population: Pelt character and live animal grading traits

Abstract

Finnish blue fox farmers breed for increased litter size and pelt size, and improved fur quality. Some farmers select pelt size and fur quality indirectly using live animal evaluations (grading traits). In order to be able to define breeding goals properly, heritabilities and genetic correlations were estimated for size traits and fur quality traits. There were four pelt character traits (pelt size, pelt colour darkness, pelt colour clarity and pelt quality) measured on dried skins, and six grading traits (animal size, grading colour darkness, grading colour clarity, underfur density, guard hair coverage and grading quality). The data included 54,680 animals born during the years 1987–2002, originating from seven farms. The heritabilities were high for pelt colour darkness and grading colour darkness, moderate for pelt size and low for other traits. In general, heritability of a pelt character trait was higher than its corresponding grading trait. Genetic correlations within the pelt character traits were low (～0.11) and within the grading traits mainly moderate or high (～0.44). There was high genetic correlation between pelt darkness and grading darkness, pelt quality and grading density, pelt size and animal size; between pelt quality and grading quality and between pelt colour darkness and grading guard hair coverage. This suggests that selection of pelt character traits via grading traits in most cases is relatively effective.     

Exploring the genetic resistance to natural gastrointestinal nematode infection in Indian goats

The present study investigated the genetic component of host resistance to gastrointestinal nematode infections in two goat breeds in a semi-arid climatic region of India. The study was carried out on 888 animals belonging to two goat breeds. Live weight, faecal egg counts (FEC) and packed cell volume (PCV) following natural parasite challenge were measured at 3, 6, 9 and 12 months of age over a 3-year period. Pedigree relationships between goats extending back 3 generations were available. The study estimated the heritabilities of indicator traits (FEC and PCV) in goats and also quantified relationships between indicator traits and growth traits at the genetic, phenotypic and environmental level. It also provided an insight for the inclusion of genetic information on resistance to nematode infection into breeding programmes. The heritabilities of the indicator traits were low to moderate in this population. Genetic correlations between FEC at 6, 9 and 12 months of age were strong (approaching unity) indicating that the trait may be controlled by same genes at these different ages. The genetic correlation between FEC and PCV from 6 months of age onwards was negative and moderate to strong. Correlations between FEC and growth traits tended to be negative. Selection index modeling investigated the use of FEC, PCV and bodyweight in selection schemes. Selection based on the measurements at 9 months of age was proposed as a means of improving productivity as well as reducing pasture contamination, thereby enhancing sustainable livestock production.     

Genetic relationships between calving and carcass traits for Charolais and Hereford cattle in Sweden

The objective of this study was to estimate genetic correlations between calving difficulty score and carcass traits in Charolais and Hereford cattle, treating first and later parity calvings as different traits. Genetic correlations between birth weight and carcass traits were also estimated. Field data on 59,182 Charolais and 27,051 Hereford calvings, and carcass traits of 5,260 Charolais and 1,232 Hereford bulls, were used in bivariate linear animal model analyses. Estimated heritabilities were moderate to high (0.22 to 0.50) for direct effects on birth weight, carcass weight, and (S)EUROP (European Community scale for carcass classification) grades for carcass fleshiness and fatness. Heritabilities of 0.07 to 0.18 were estimated for maternal effect on birth weight, and for direct and maternal effects on calving difficulty score at first parity. Lower heritabilities (0.01 to 0.05) were estimated for calving difficulty score at later parities. Carcass weight was positively genetically correlated (0.11 to 0.53) with both direct and maternal effects on birth weight and with direct effects on calving difficulty score. Carcass weight was, however, weakly or negatively (-0.70 to 0.07) correlated with maternal calving difficulty score. Higher carcass fatness grade was genetically associated with lower birth weight, and in most cases, also with less difficult calving. Genetic correlations with carcass fleshiness grade were highly variable. Moderately unfavorable correlations between carcass fleshiness grade and maternal calving difficulty score at first parity were estimated for both Charolais (0.42) and Hereford (0.54). This study found certain antagonistic genetic relationships between calving performance and carcass traits for both Charolais and Hereford cattle. Both direct and maternal calving performance, as well as carcass traits, should be included in the breeding goal and selected for in beef breeds.     

Genetics of resistance to mastitis in dairy cattle

Genetic variability of mastitis resistance is well established in dairy cattle. Many studies focused on polygenic variation of the trait, by estimating heritabilities and genetic correlation among phenotypic traits related to mastitis such as somatic cell counts and clinical cases. The role of Major Histocompatibility Complex in the susceptibility or resistance to intrammamary infection is also well documented. Finally, development from molecular genome mapping led to accumulating information of quantitative trait loci (QTL) related to mastitis resistance and better understanding of the genetic determinism of the trait. From economic and genetic analyses, and according to welfare and food safety considerations and to breeders and consumer's concern, there is more and more evidence that mastitis should be included in breeding objective of dairy cattle breeds. Many countries have implemented selection for mastitis resistance based on linear decrease of somatic cell counts. Given biological questioning, potential unfavourable consequences for very low cell counts cows are regularly investigated. Improvement of selection accuracy for mastitis resistance is ongoing and includes: advances in modelling, optimal combination of mastitis related traits and associated predictors, such as udder morphology, definition of global breeding objective including production and functional traits, and inclusion of molecular information that is now available from QTL experiments.     

Genetic associations of teat cup attachment failures,incomplete milkings,and handling time in automatic milking systems with milkability,temperament, and udder conformation

Automatic milking systems (AMS) allow recording of alternative milkability measures. Our objectives were to estimate genetic parameters for teat cup attachment failures (AtF), incomplete milkings (IM), and handling time (HT), and their genetic correlations with box time (BT), udder traits and temperament. Teat coordinates were to measure udder conformation and teat placement. Genetic correlations were estimated between these traits and linear classification traits. Data on Swedish Holstein and Swedish Red cows in 19 AMS herds and 74 herds with conventional milking parlors were analyzed. HT and IM had low heritabilities, but that of AtF was 0.21–0.31. Genetic correlations between AtF and temperament were 0.44–0.71 (calm cows having low AtF). Short BT was weakly genetically associated with shallow udders with short and thin teats. High genetic correlations (0.91–0.98) were found between teat coordinate traits and linear classification traits. Thus, AMS records can be effectively used to select for improved milkability and temperament.     

Selection for conformation and conformational homogeneity of litters in the German shepherd dog

Breeding standards of most dog breeds specify tolerable ranges of certain conformation traits. In the German shepherd dog (GSD), current means for withers height (WH) and BW are close to the upper breed limits. Therefore, strategies to avoid a further increase in size and to maximize the proportion of dogs fitting the breeding standard with respect to WH and BW should be compared. Body measurements were available for 14,416 male and 21,612 female GSD from 26,155 litters. Withers height and body mass index (BMI; i.e., BW/WH(2)) were considered direct selection traits. Using information on 17,154 GSD from litters with at least 2 dogs with conformation data, we defined within-litter variances of WH (vWH) and BMI (vBMI) as traits to select for the conformational homogeneity of litters. Officially recorded scores for canine hip dysplasia (CHD) of all dogs were used to monitor possible side effects of conformation selection on CHD. Genetic parameters were estimated multivariately in linear animal models by using Gibbs sampling. Heritabilities ranged between 0.19 and 0.34 for all traits, and additive genetic correlations between WH and vWH were -0.11 and those between BMI and vBMI were 0.11. The expected selection response was studied using the relative breeding values (RBV) of parents, assuming exclusion of sires, dams, or both with RBV larger than 120 and comparing means of WH, BMI, and CHD scores between offspring of all and selected parents. Concurrent selection for small WH and vWH was found to reduce the mean WH in males and females most efficiently while having little effect on CHD distributions. Multiple-trait selection for WH, vWH, BMI, and vBMI was hindered by the negative genetic correlations between the traits, and it tended to interfere with improvement of CHD status. Use of the RBV for WH and vWH for conformation selection is therefore recommended to maximize breeding success with regard to conformation and conformational homogeneity in the GSD.     

A genetic analysis of meat compositions in Japanese Black cattle: Genetic parameters and sex influence

Meat composition in beef is related to eating quality and food functionality. Genetic parameters for several meat compositions including free amino acid, peptide and sugar, however, remain poorly described. In this study, we estimated genetic parameters for 51 meat components, including free amino acids, peptides, sugars and fatty acid compositions, and two carcase traits in 1,354 heifers and 1,797 steers of Japanese Black cattle. Heritability estimates were generally equivalent to or moderately greater than those in previous studies of this breed. Genetic correlations between free amino acids, peptides and sugars and carcase traits were often negative, suggesting a trade‐off between traits. Using two‐trait animal models that treat records from the two sexes as different traits, we estimated sex‐specific heritabilities and cross‐sex genetic correlations which indicate the sex differences in genetic architecture. In these analyses, 12 traits showed significant heritability differences between sexes and cross‐sex genetic correlations occasionally deviated from unity. These results could be used to inform future breeding schemes and investigations of the genetic architecture of meat compositions in beef.     

Morphological analysis and effect of selection for conformation in the Noriker draught horse population

To evaluate the breeding program in the Austrian Noriker draught horse population, which is mostly based on conformation, 31 body measurements from 497 horses in seven breeding areas of Austria were recorded. In addition, the data of 2376 horses (the current breeding population) from the studbook, containing 10 scored conformation traits and 4 body measurements per individual, were analysed. We assumed breeding regions, coat colour strains and breeding classes assigned according to conformation evaluation to be the main factors in phenotypic diversity of this Austrian draught horse breed. Significant differences and distances were found for all of these factors. Whereas differences between breeding areas mostly are due to housing conditions and feeding strategies, the breeding classes provide a very distinct picture of the current trends in Noriker breeding. Breeding organisations favour a long and high Noriker draught horse, a tendency that is the same for all departments. Heritability estimates for morphological traits vary from 0 to 0.67, and from 0.08 to 0.37 for linear type traits.     

Genetic correlations between similar traits in the Danish and Swedish Warmblood sport horse populations

Genetic correlations between phenotypically similar or related traits tested at young horse performance tests for Danish Warmblood (DWB) and Swedish Warmblood (SWB) horses were calculated using Multi-trait Across Country Evaluation (MACE). Data comprised stallions with an estimated breeding value (EBV) from the national genetic evaluations (NGE) based on at least 10 progeny tested in performance tests, and the ancestors of those stallions in two generations. The DWB data included 349 stallions and the SWB data 426 stallions. Of these, 28 had EBVs in both DWB and SWB. Additionally 151 pedigree animals were common between DWB and SWB. The dependent variables used were NGE results of stallions born 1980 and later, which reduced the number of common stallions with EBVs to 23. The genetic correlations were very high for jumping traits (0.99) and dressage related traits (0.89–0.97). For conformation traits correlations varied between 0.10 and 0.98. Because of the high genetic correlations and frequent use of same or closely related foreign stallions, breeders of both DWB and SWB would benefit from using the NGEs for performance traits across countries, although the genetic correlations do not consider differences in genetic merit levels between the populations. It would be feasible to perform a joint genetic evaluation using MACE, which would improve the reliability of estimated breeding values, and enable ranking of all stallions according to the national scale of each country.     

The contribution of migrant breeds to the genetic gain of beef traits of German Vorderwald and Hinterwald cattle

During the past decades, migrant contributions have accumulated in many local breeds. Cross‐breeding was carried out to mitigate the risk of inbreeding depression and to improve the performance of local breeds. However, breeding activities for local breeds were not as intensive and target oriented as for popular high‐yielding breeds. Therefore, even if performance improved, the gap between the performance of local and popular breeds increased for many traits. Furthermore, the genetic originality of local breeds declined due to the increasing contributions of migrant breeds. This study examined the importance of migrant breed influences for the realization of breeding progress of beef traits of German Vorderwald and Hinterwald cattle. The results show that there is a high amount of migrant contributions and their effects on performance are substantial for most traits. The effect of the French cattle breed Montbéliard (p‐value 0.014) on daily gain of Vorderwald bulls at test station was positive. The effects of Vorderwald ancestors (p‐value for daily gain 0.007 and p‐value for net gain 0.004) were positive for both traits under consideration in the population of Hinterwald cattle. Additionally, the effect of remaining breeds (p‐value 0.030) on net gain of Hinterwald cattle in the field was also positive. The estimated effect of Fleckvieh ancestors on net gain of Hinterwald cattle was even larger but not significant. Breeding values adjusted for the effects of the migrant breeds showed little genetic trend.