Inheritance and linkage relationship of scent in rice

Summary The inheritance of scent in rice and linkage relationship of genes governing scent with those controlling leaf sheath colour, ripening hull colour and apiculus pigmentation were studied in a cross between Pankaj (nonscented) and Kalabhat (scented) rice cultivars. The scent was identified by leaf analysis.Two dominant complementary genes Sk ₁ and Sk ₂ were found to be responsible for controlling scent. Either of the genes produce mild scent, the presence of both Sk ₁ and Sk ₂ is necessary for production of parental type scent. The genes were independent of other genes controlling leaf sheath colour, ripening hull colour and apiculus pigmentation.     

Linkage studies in rice (Oryza sativa L.): Flowering,awning and awn colour,panicle density and exsertion,liguleless, bent node and pigmentation

Summary The cross of two indica types of rice T9 and M35, provided scope for the inheritance study of 16 characters such as flowering, awning and awn colour, panicle density and panicle exsertion, presence of ligule, bent node, and pigmentation in ten other characters. Besides the purple colour, yellow and chalky white were studied for their inheritance. Two to five pairs of factors were found to govern the 16 characters under study. Complementary, duplicate, complementary duplicate, inhibitory complementary and inhibitory duplicate action of genes was observed. Independent dominant action of individual genes which is equivalent to the action of two or three genes is recorded in respect of panicle density and awning and awn colour. Inheritance of the 16 characters shows the involvement of 59 genes unreported in the past. Out of them 19 are inhibitors. Combined segregation data have revaled the existence of many pleiotropic genes acting on two or more characters and exhibiting differential expression in some of them, which is an interesting part of the present study. Linkage analysis has resulted in the assignment of the record number of 17 genes to a single group, nine of them being inhibitors. The linkage map constructed in the order of genes as suggested by the cross over values shows a good agreement. This linkage group is concluded not to form part of any group propounded by Misro et al. (1966) in indica rice.     

Linkage of genes for anthocyanin pigmentation in rice (Oryza sativa L.)

Summary The inheritance of anthocyanin pigmentation and the interrelationship between genes governing anthocyanin pigmentation in different parts of the rice plant and genes governing panicle density were studied in the cross Suma × Wanar-1. A ratio of 45 pigmented: 19 non pigmented was realised for anthocyanin accumulation in sheath, nodal ring, internode, leaf tip, leaf margin and apiculus whereas a ratio of 3 normal:1 laxy was observed for panicle density. Pleiotropic action of a basic gene (A) and each of the two complementary duplicate genes (P _a or P _b) was detected. A linkage group of genes localising pigment in six plant parts was identified, the sequence of genes being P _nr-P _lm-P _la-P _a-P _sh-P _in. This may form part of the III S _p group of Misro et al. (1966), in which case the genes P _nr and P _la are proposed to be additions to this group.     

Linkage studies in indica rice,Oryza sativa L.

Summary It has been found that long palea, an easily identifiable trait, is attributable to two duplicate recessive genes designated lp ₁ and lp ₂. A new character, uneven kernel has been described, the espression of which is controlled by two dominant complementary genes, Un _a and Un _b. Two dominant complementary genes, Cl _a and Cl _b have been found controlling clustered habit.One of the complementary genes for clustered habit, Cl _a was linked with one of the complementary genes for uneven kernel, Un _a with a c.o. value of 22.1 per cent. This linkage has been assigned to I linkage group in indica rice.The long glume gene g showed 22.2 per cent linkage with oed rice gene, Rc. It was further found linked with one of the complementary genes for uneven kernel, Un _b (17.8 per cent) and one of the duplicate recessive genes for long palea, lp ₁ (30.2 per cent). The cross-over value between Ub _b and lp ₁ was 11.5 per cent. The gene order appeared to be lp ₁-Un _b-g-Rc. These linked genes have tentatively been assigned to IV linkage group in indica rice.     

An association between resistance to root aphid (Pemphigus bursarius L.) and downy mildew (Bremia lactucae Regel) in lettuce

Summary Many lettuce cultivars (Lactuca sativa L.) with high resistance to lettuce root aphid (Pemphigus bursarius L.) also carried the gene Dm-6 for specific resistance to downy mildew (Bremia lactucae Regel). This suggests the possibility of linkage between this gene and root aphid resistance. The origin of this association is discussed.     

The mildew resistance gene Sph 2in relation to gall mite resistance in the black currant

Summary In black currant progenies derived from parents heterozygous for resistance to American gooseberry mildew. Sphaerotheca mors-uvae (Schw.) Berk., and to gall mite, Cecidophyopsis ribis Westw. (genes Sph ₂from the Swedish cultivar Öjebyn and Ce from Ribes grossularia L., respectively), there is invariably a defieit of mildew resistant plants. Linkage in repulsion between Sph ₂and Ce would account for the significantly greater deficit of mildew resistants in the gall mite resistant class. In contrast with published data for the mildew resistance gene Sph ₃, there is no evidence of linkage of Sph ₂with the leafing out gene Lf ₁, suggesting that the gene order is Sph ₂-Ce-Lf ₁-Sph ₃.     

Complete or incomplete dominance of resistance of the oat cultivar Delphin as a function of crown rust culture

Summary In oat cv. Delphin (Bonda x Carstens Vii) two complementary genes were found conferring resistance to sixteen cultures of ten crown rust (Puccinia coronata Cda. var. avenae Fraser ET Led.) races. The complementary genes showed full dominance to eight races and incomplete dominance to two races.     

A linkage group in rice (Oryza sativa L.) involving anti-inhibitory genes

Summary Inheritance studies of purple pigmentation in T-160 x AC-177 revealed that purple colour in the coleoptile is based on four genes (Pc ₁ , Pc₂, I-Pc, Ai-Pc), in the internode on two genes (Pin _a1 , Pin _a2 ), in the junctura on three genes (Pja, Pjb ₁ , Pjb ₂ ) and in the apiculus on three genes (Pa, I-P, Ai-P). For panicle density monogenic segregation (Lx) was obtained. Linkage was established between the genes for the apiculus (Pa and Ai-P), panicle density (Lx), the internode (Pin _a ), the coleoptile (Ai-Pc) and the junctura (Pja), in that sequence. This linkage group forms part of the IV mp group of Misro et al. (1966) which corresponds to the g group of japonica.The two anti-inhibitory genes Ai-Pg and Ai-Pau of the linkage group Ai-Pg=Ai-Pc=Ai-Pau reported earlier (Dhullappanavar et al., 1975) are also allotted to the IV linkage group of Misro et al. (1966) since Ai-Pc is placed in that group in the present studies.     

Identification of microsatellite markers linked to the blast resistance gene <Emphasis Type="Italic">Pi-1(t)</Emphasis> in rice

The present work was conducted to identify microsatellite markers linked to the rice blast resistance gene Pi-1(t) for a marker-assisted selection program. Twenty-four primer pairs corresponding to 19 microsatellite loci were selected from the Gramene database (www. gramene.org) considering their relative proximity to Pi-1(t) gene in the current rice genetic map. Progenitors and DNA bulks of resistant and susceptible families from F₃ segregating populations of a cross between the near-isogenic lines C101LAC (resistant) and C101A51 (susceptible) were used to identify polymorphic microsatellite markers associated to this gene through bulked segregant analysis. Putative molecular markers linked to the blast resistance gene Pi-1(t) were then used on the whole progeny for linkage analysis. Additionally, the diagnostic potential of the microsatellite markers associated to the resistance gene was also evaluated on 17 rice varieties planted in Latin America by amplification of the specific resistant alleles for the gene in each genotype. Comparing with greenhouse phenotypic evaluations for blast resistance, the usefulness of the highly linked microsatellite markers to identify resistant rice genotypes was evaluated. As expected, the phenotypic segregation in the F₃ generation agreed to the expected segregation ratio for a single gene model. Of the 24 microsatellite sequences tested, six resulted polymorphic and linked to the gene. Two markers (RM1233*I and RM224) mapped in the same position (0.0 cM) with the Pi-1(t) gene. Other three markers corresponding to the same genetic locus were located at 18.5 cM above the resistance gene, while another marker was positioned at 23.8 cM below the gene. Microsatellite analysis on elite rice varieties with different genetic background showed that all known sources of blast resistance included in this study carry the specific Pi-1(t) allele. Results are discussed considering the potential utility of the microsatellite markers found, for MAS in rice breeding programs aiming at developing rice varieties with durable blast resistance based on a combination of resistance genes. Centro Internactional de Agricultura Tropical (CIAT) institute where the research was carried out     

Inheritance of resistance to powdery mildew Sphaerotheca macularis (Fr.)Jaczewski in the red raspberry,Rubus idaeus L.

Summary The varieties Lloyd George and Burnetholm (and probably Malling Promise) are heterozygous for three genes governing resistance to mildew (S. macularis (FR.) Jaczewski, syn. S. humuli (DC.) BUrr.), Sp ₁ and Sp ₂ being dominant complementaries and sp ₃ recessive. Resistance whether of Sp ₁, Sp ₂ or sp ₃ sp ₃ origin is epistatic to susceptibility. Sp ₃ is linked with the fruit colour gene T with a crossover value of ca. 25%, the gene order in this linkage group being B-Sx ₃-T-Sp₃.Evidence suggesting linkage between H (hairy canes) and resistance is presented.     

Wide compatibility in rice (Oryza sativa L.)

Summary Wide compatible varieties (WCVs) show normal spikelet fertility in crosses with Indica and Japonica rice varieties. Crosses of Indica and Japonica varieties frequently show high spikelet sterility which prevents exploitation of heterosis for grain yield. We screened 41 rice varieties for the wide compatibility trait by crossing each with three Indica and three Japonica testers. Varieties giving fertile F₁ hybrids with both groups of testers were classified as WCVs. Seven varieties viz., BPI-76 (Indica); N 22; Lambayeque-1 and Dular (Aus); Moroberekan, Palawan and Fossa HV (Japonicas), were identified as WCVs. The frequency of WCVs was higher among Aus and Japonicas. The wide compatibility trait in varieties: Dular and Moroberekan was controlled by a single dominant gene linked with the Est-2 and Amp-3 loci (mean recombination 32.0%). Est-2 and Amp-3 showed complete linkage. Pgi-2 was found to be linked with Est-2 and Amp-3 (mean recombination 16.1%). Est-2 and Amp-3, showed a tighter linkage with C ⁺ (mean recombination 4.1%). Pgi-2 showed a lower linkage with C ⁺ (mean recombination 17.3%). The recombination values between the WC gene in Dular and C ⁺ was much higher than those reported in Japan for the WC gene (S₅ ⁿ) from Ketan Nangka. It is possible that the WC gene from Dular is different from that in Ketan Nangka. Linkage intensities with the WC gene were not strong enough to be of use for indirect selection for the wide compatibility trait. A search for a more closely linked isozyme or DNA marker was proposed.     

Detection of quantitative trait locus for leaffolder (Cnaphalocrocis medinalis (Guenée)) resistance in rice on linkage group 1 based on damage score and flag leaf width

Rice leaffolder (RLF) (Cnaphalocrocis medinalis (Guenée) is a destructive and widespread insect pest throughout the rice growing regions in Asia. The genetics of resistance to RLF in rice is very complex and not thoroughly explored. The present study was conducted to detect the quantitative trait loci (QTL) associated with RLF resistance involving 176 recombinant inbred lines (RILs) of F₈ generation derived from a cross between IR36, a leaffolder susceptible variety and TNAULFR831311, a moderately resistant indica rice culture. Simple sequence repeat (SSR) markers were used to construct specific linkage groups of rice. All the RILs were screened to assess their level of resistance to RLF by measuring the leaf area damaged. Besides this, the length and width of the flag leaf of each RIL were measured since these two parameters were considered as correlated traits to the RLF resistance in rice. All the above parameters observed across the RILs showed quantitative variation. Correlation analysis revealed that damage score based on greenhouse screening was positively correlated with length and width of the flag leaf. Out of 364 SSR markers analysed, 90 were polymorphic between the parents. Multi-point analysis carried out on segregating 69 SSR marker loci linkage group wise resulted in construction of linkage map with eleven groups of 42 SSR markers. Through single marker analysis, 19 SSR markers were found to have putative association with the three phenotypic traits studied. Of these markers, RM472 was identified as a locus having major effect on RLF resistance trait based on length of the flag leaf. Interval mapping detected two QTLs on linkage group 1. Among these QTLs, the QTL flanked by RM576–RM3412 were found to be associated with width of the flag leaf and RLF resistance. The putative SSR markers associated with leaffolder resistance identified in the present study may be one of the loci contributing resistance to RLF in rice.     

Identification of SCAR markers linked to <Emphasis Type="Italic">or</Emphasis>, a gene inducing beta-carotene accumulation in Chinese cabbage

The or mutation in Chinese cabbage (Brassica rapa L. ssp. pekinensis) is a recessive, single-locus mutation that causes the head leaves of the plant to accumulate carotenoids and turn orange. In China, considerable attention has been focused in recent years on breeding the variety with orange head leaves. In this study, sequence-characterized amplified region (SCAR) markers linked to the or gene were identified based on random amplified polymorphic DNA (RAPD) and amplified fragment length polymorphism (AFLP) by performing a bulked segregant analysis (BSA) using a doubled haploid (DH) population derived from the F₁ cross between 91-112 (white head leaves) and T12-19 (orange head leaves) via microspore culture. Two RAPD markers—OPB01-845 and OPAX18-656—and 1 AFLP marker, namely, P67M54-172, were identified to be linked to the or gene, and they were successfully converted into the SCAR markers SCR-845, SCOR204, and SCOR127, respectively. In a linkage analysis, these 3 SCAR markers and 2 previously published simple sequence repeat markers, namely, BRMS-51 and Ni4D09 (located on R9 linkage group), were mapped to the same linkage group with the or gene at a LOD score of 6.0, indicating that the or gene should be located on the linkage group R9 of the A genome. In addition, accuracies of 92%, 90%, and 89.1% were obtained when 110 different inbred breeding lines of Chinese cabbage were used for investigation with these 3 SCAR markers, indicating that these makers could be used in marker-assisted selection in orange head leaf breeding programs for Chinese cabbage.     

RFLP/AFLP mapping of a brown planthopper (Nilaparvata lugens Stål) resistance gene Bph1 in rice

We have constructed a linkage map of the rice brown planthopper (BPH)resistance gene, Bph1. RFLP and AFLP markers were selected by thebulked segregant analysis and used in the mapping study of 262 F₂sthat were derived from a cross of `Tsukushibare', a susceptible japonica cultivar, and `Norin-PL3', an authentic japonicaBph1-introgression line. Twenty markers were mapped within a 28.9-cMregion containing the Bph1 locus on the long arm of rice chromosome12. Combining the result of segregation analysis of BPH resistance by themass seedling test and that of the markers, the Bph1 locus wasmapped within a 5.8-cM region between two flanking markers. The closestAFLP markers, em5814N and em2802N, was at 2.7 cM proximal to theBph1 locus. Together with the previously constructed high-resolutionmap of bph2 locating the locus at ca. 10 cM proximal to the Bph1 locus, this improved version of the linkage map would facilitatepyramiding these two important BPH resistance genes.     

Correlated resistance of cassava to mosaic and bacterial blight diseases

Summary The two most serious diseases of cassava (Manihot esculenta Crantz) are cassava mosaic disease (CMD) and cassava bacterial blight (CBB) (Xanthomonas manihotis Starr). Clone 58308, derived from the third backcross of the interspecific cross of cassava (M. esculenta) x ceara rubber (M. glaziovii), showed a high level of resistance to both diseases. Crosses of 58308 with several other clones which varied from susceptible to moderately susceptible to both diseases gave progenies with a significant genotypic correlation between resistance to both diseases (r=0.90), apparently due to linkage. The heritabilities of resistance to the diseases were estimated at 50–70% for CMD and 25–65% for CBB. Resistance to both diseases is assumed to be polygenic. The correlated response to selection for CMD and for CBB was estimated.     

RFLP mapping of an aphid resistance gene in cowpea (Vigna unguiculata L. Walp)

Summary Restriction fragment length polymorphism (RFLP) analysis has several advantages over traditional methods of genetic linkage mapping, one of these being the starting point for map-based cloning. The recent development of an RFLP map of cowpea (Vigna unguiculata L. Walp) has allowed the investigation of associations between genes of interest and RFLP markers. A cross between an aphid (Aphis craccivora Koch) resistant cultivated cowpea, TT84S-2246-4, and an aphid susceptible wild cowpea, NI 963, was screened for both aphid phenotype and RFLP marker segregation. One RFLP marker, bg4D9b, was found to be tightly linked to the aphid resistance gene (Rac ₁) and several flanking markers in the same linkage group (linkage group 1) were also identified. The close association of Rac ₁ and RFLP bg4D9b presents a real potential for cloning this insect resistance gene.     

Resistance to the gall mite and American gooseberry mildew in black currants in relation to season of leafing out

Summary In black currant (Ribes nigrum) backcross progenies segregating for resistance to the gall mite, Cecidophyopsis ribis Westw. (gene Ce from Ribes grossularia L.), and to American gooseberry mildew, Sphaerotheca mors-uvae (Schw.) Berk. (gene Sph ₃from R. glutinosum), significant differences in season of leafing out occurred between the resistant and susceptible classes. The data are consistent with the hypothesis that two additive genes, Lf ₁and Lf ₂, controlled season of leafing out and that Ce and Sph ₃ were linked with Lf ₁.     

Genetics of five hairy phenotypes and a linkage group of Pennisetum americanum

Summary In pearl millet hairy lamina, hairy sheath and hairy stem were inherited as monofactorial recessives while hairy leaf margin and hairy node were inherited as monogenic dominant traits. The gene for hairy lamina hl showed independent assortment from the gene for hairy node, Hn, and showed linkage with the genes hst (hairy stem), hs (hairy sheath) and Hm (hairy leaf margin). Furthermore, Hl was observed to have an epistatic effect on the expression of hs. The percentages of recombination between the gene pairs hl-hst, hl-hs and hl-Hm were 0.0, 8.30±0.44 and 19.81±0.98 respectively. Thus the genes hl-hst-hs Hm form one linkage group.     

Inheritance of resistance to Pseudoperonospora cubensis Rost. In cucumber (Cucumis sativus L.)

Summary Since June 1973 Pseudoperonospora cubensis (Berk & Curt) Rost., which causes downy mildew in cucumber, occurs in the Netherlands. The resistance against this disease appears to be based on one recessive gene in linkage with the dominant gene D for dull green fruit skin colour. It is demonstrated that this recessive gene is also linked with one of the genes for resistance to powdery mildew present in the variety Ashley.The powdery mildew resistant lines tested are also resistant against downy mildew, the linkage with the gene D having been broken.Stationed at Breeding Station Pannevis B.V., De Lier, the Netherlands.     

The transfer of a gene for glutinous endosperm to Oryza glaberrima Steud. From a japonica variety of O. sativa L.

Summary In common rice, Oryza sativa L. (n=12), the gene Am for non-glutinous is dominant over the gene am for glutinous. In African rice, O. glaberrima Steud. (n=12), no spontaneous glutinous strain has been found, but recently a glutinous strain of glaberrima was induced by EMS-treatment.The interspecific cytoplasm substitution line with sativa cytoplasm and glaberrima nucleus is male sterile. It has been confirmed that the complete restoration of pollen fertility in this male sterile line is attributed to a single dominant nuclear gene Rf _j.Trial to transfer gene am from sativa to glaberrima was commenced with backcrosses of the F₁ hybrid (glutinous sativa cv. Iwai-mochi × glaberrima ) to glaberrima type plants of the substitution line homozygous for Rf _j,using the latter as the pollen parent. At the B₁ step, highly fertile glaberrima type Am/am plants were obtained. Thereafter plants of this type were backcrossed to normal glaberrima as the recurrent pollen parent to complete the nuclear substitution. It was confirmed that the EMS-induced glutinous character of glaberrima was a monogenic recessive and that the same gene controls the expression of glutinous character in the different rice species, sativa and glaberrima.