Longitudinal serological surveys of Atlantic salmon, Salmo salar L., using a rapid immunoperoxidase-based neutralization assay for salmonid alphavirus

Longitudinal serological surveys for salmon pancreas disease virus (SPDV), the causal agent of pancreas disease (PD), were conducted on multiple caged populations of Atlantic salmon, Salmo salar L., on two farms over a 77-week period (farm 1, freshwater and marine stages) and a 36-week period (farm 2, marine stage only), using a microtitre-based virus neutralization (VN) assay. Collected sera were also screened for viraemia with SPDV, and pancreas, heart and muscle tissues were examined for lesions consistent with PD. Outbreaks of PD occurred during the marine phase on both farms, as demonstrated by seroconversion, the isolation of virus and progressive histopathological changes consistent with a PD outbreak. All populations monitored showed a progressive increase in seroprevalence of 90-100%, typically accompanied by rises in geometric mean antibody titres. With the exception of one caged population, which showed a marked biphasic seroprevalence pattern, the seroprevalence figures in the remaining four monitored populations remained high (> or =70%) until the end of the study period. Peak VN titres of > or =1/1280 were detected on both farms. The results provide essential baseline information for the interpretation of SPDV VN serology results, and indicate that this methodology is suited to both the diagnosis and seroepidemiology of SPDV infections.     

Geographical distribution of salmonid alphavirus subtypes in marine farmed Atlantic salmon, Salmo salar L., in Scotland and Ireland

Sequence data from salmonid alphavirus (SAV) strains obtained from farmed marine Atlantic salmon, Salmo salar L. , over a 20-year period between 1991 and 2011 was reviewed to examine the geographical distribution of the genetically defined SAV subtypes in twelve regions across Ireland and Scotland. Of 160 different Atlantic salmon SAV strains examined, 62 belonged to subtype 1, 28 to subtype 2, 34 to subtype 4, 35 to subtype 5 and 1 to subtype 6. SAV subtypes 1, 4 and 6 were found in Ireland, while subtypes 1, 2, 4 and 5 were found in Scotland. In the majority of regions, there was a clear clustering of subtypes, with SAV subtype 1 being the dominant subtype in Ireland overall, as well as in Argyll and Bute in Scotland. SAV subtype 2 predominated in the Shetland and Orkney Islands. The emergence in Atlantic salmon of subtype 2 strains typically associated with sleeping disease in rainbow trout in Argyll and Bute, strongly suggesting transmission of infection between these species, was noted for the first time. SAV subtype 4 was the most common subtype found in the southern Western Isles, while SAV subtype 5 predominated in the northern Western Isles and north-west mainland Scotland. No single strain was dominant on sites in the western Highlands, with a number of sites in this region in particular having more than one subtype detected in different submissions. The significance of these results in relation to aspects of the epidemiology of infection, including transmission, biosecurity and wildlife reservoirs are discussed and knowledge gaps identified.     

A comparison of catchment based salmonid habitat survey techniques in three river systems in Northern Ireland

Three survey techniques, a fully quantitative, multivariate study; a shorter or truncated fully quantitative method and a Geographical Information System (GIS) based, semi-quantitative, survey technique, were developed to assess in-river salmonid habitats on a catchment wide basis. These methods were tested and compared on three river systems in Northern Ireland: the Blackwater, the Bush and the Main. The research indicated that the fully quantitative method generated an accurate habitat database but required a high investment in time and resources to complete. The truncated survey approach often produced an inaccurate habitat database. The semi-quantitative technique generated a more accurate habitat dataset with greater productivity and efficiency for the resources invested in the survey.     

Macroinvertebrate frequency data for the RIVPACS III sites in Northern Ireland and some comparisons with equivalent data for Great Britain

1. A total of 313 macroinvertebrate taxa were recorded from the 70 running‐water sites in the R iver I nV ertebrate P rediction A nd C lassification S ystem (RIVPACS III) dataset for Northern Ireland, after the application of a standardization procedure to ensure that all samples were identified to the same taxonomic level. The listing includes a small number of oligochaetes not previously reported from Ireland. The frequency of occurrence of the 313 taxa within the Northern Ireland dataset is also presented. 2. The taxonomic composition and frequency of occurrence of taxa in the Northern Ireland dataset were then compared with the 614 site dataset for Great Britain, which included 637 taxa, and a 75 site subset within Britain at a similar latitude to Northern Ireland with 333 taxa. 3. The macroinvertebrate fauna of Northern Ireland is dominated by taxa recorded at the highest frequencies of occurrence in Britain. Some notable absences are highlighted and, in particular, a small number of lotic mayflies and stoneflies which are common in Great Britain. There is documentary evidence of the introduction by man of a number of non‐insect taxa, either deliberately or by accident. 4. A detailed knowledge of the present composition of the macroinvertebrate fauna of running‐water sites in Northern Ireland, and an active research programme on the potential for new colonists to pose a threat to native species, are important factors in the future conservation of the freshwater fauna. Copyright © 2000 John Wiley & Sons, Ltd.