Genetic association of within‐boll yield components and boll morphological traits with fibre properties in upland cotton (Gossypium hirsutum L.)

Knowledge of genetic relationships between within‐boll yield components and fibre quality is essential for simultaneous improvement of lint yield and fibre quality in upland cotton (Gossypium hirsutum L.). Nine parents and their F₁ progeny with reciprocals from a 3 × 6 factorial mating design were grown in 2008 and 2009. Seven within‐boll yield components and two boll morphological traits and the three fibre quality parameters were analysed based on a conditional additive/dominance (AD) genetic model. Results showed that boll length contributed to the largest proportion of phenotypic, additive and dominance variances for UHM length; seed index contributed to the largest proportion of phenotypic and additive variances for fibre strength; boll width made the largest contribution to phenotypic and additive variances and the second largest contribution to dominance‐by‐environment interaction variance for micronaire, indicating that they played an important role than the other traits for fibre length, strength and fineness/maturity, respectively. It is worthy of note that those correlations between boll shape and fibre quality apply only to the nine parents and the resultant hybrids in this study and do not imply a cause and effect relationship.     

Association mapping for seed cotton yield,yield components and fibre quality traits in upland cotton (Gossypium hirsutum L.) genotypes

Association mapping has revolutionized human genetics and is increasingly used in plant genetics. It is an efficient way of determining the genetic basis of complex traits. In cotton so far numerous association mapping studies are available as compared to many other important crops. In our study, mapping was performed using cotton 63K infinium beadchip with 201 germplasm lines. Through fast STRUCTURE analysis, lines were grouped into 12 subgroups and revealed genome sharing among the groups. The critical value (R²) was set to 0.243 as threshold to claim LD between two loci. About 3.13% marker pairs recorded significantly high LD (R² = 1), and 8.19% of marker pairs were in the range of 0.3 to 0.99 R². In MLM, 349 significant marker–trait associations were detected as against 642 in GLM because of effectiveness in eliminating false associations in MLM. A total of 68 markers explained >10% phenotypic variation for yield and fibre quality traits. Phenotypic variation explained by markers was smaller, suggesting that they might be associated with minor QTLs.     

陆地棉种质资源抗旱性状的关联分析

干旱是导致全世界棉花严重减产、纤维品质下降的重要因素,因此获得高产、优质、耐旱的棉花新品种一直是棉花的育种目标。本研究选取217份陆地棉栽培种组成的自然群体为研究对象,采用全生育期处理组灌水量为对照组50%的干旱胁迫处理,并在处理后期对217份材料的株高、衣分、单铃重等18个性状进行2年2点的表型鉴定,干旱胁迫后,群体间响应差异明显,多个表型性状在对照和处理间表现显著差异。通过BLUP分析表型数据并计算各性状的抗旱系数;全基因组范围选取的214对多态性SSR分子标记扫描群体,共检测到393个多态性位点,基因多样性系数平均值为0.402,范围为0.072～0.631, PIC值平均为0.329,范围为0.070～0.560;群体结构分析表明,该群体可分为2个亚群。用上述SSR标记分别对18个性状的抗旱系数进行关联分析,共关联到76个极显著位点(P<0.01),表型变异解释率为2.930%～7.218%,其中共有14个标记位点能同时被2种或以上性状检测到。研究结果可为后期棉花杂交育种亲本选择及抗旱分子标记辅助育种提供理论基础及参考依据。     

Genetic effects and heterosis of within-boll yield components in upland cotton (Gossypium hirsutum L.)

Within-boll yield components are the most basic contributors to lint and seed yield of cotton (Gossypium hirsutum L.), which is a major source of natural fiber and edible oil throughout the world. Little information is available on genetic effects and heterosis of these traits in cotton. Three cotton cultivars and six breeding lines differing in within-boll yield components were used for this study. Parents and their F₁ progeny with reciprocals from a 3×6 factorial mating design were grown at Jiangxi Agricultural University experimental farm in 2008 and 2009. Seven within-boll yield components and two boll bur characters were analyzed under an additive-dominance genetic model with genotype and environment interaction. Additive effects were significant for all traits and dominance effects were significant for all traits except seed mass per seed. Genetic variances for lint mass per seed, SM/S and boll bur weight were primarily additive variances ranging from 39.6 to 58.9 %. Lint mass per boll and seed number per boll variances were primarily due to dominance genetic effects ranging from 36.4 to 48.8 %. Dominance and additive effects were equally important for boll weight, seed mass per boll and boll bur percentage. Additive and additive × environment effects were more important than other effects for lint percentage. A802-1 had the best mean performance and additive effects increasing BW, SM/B, S/B and SM/S, but reduced LP and LM/S. A9-1 and Lu40534 had additive effects associated with increasing LP. The two crosses A9-1×Lu40534 and Tezsh×33B were detected with favorable heterozygous dominant effects and heterosis over best parent for BW, LP, LM/B, SM/B and S/B. Favorable genotypic and phenotypic correlations were identified between within-boll lint yield components (LM/B, LM/S) and within-boll seed yield components (SM/B, S/B, SM/S). These results indicate that simultaneous genetic improvement of multiple within-boll yield components can be expected in breeding populations derived from these cotton cultivars and breeding lines.     

QTL analysis for early-maturing traits in cotton using two upland cotton (Gossypium hirsutum L.) crosses

Making use of the markers linked closely to QTL for early-maturing traits for MAS (Marker-assisted selection) is an effective method for the simultaneous improvement of early maturity and other properties in cotton. In this study, two F₂ populations and their F_2:3 families were generated from the two upland cotton (Gossypium hirsutum L.) crosses, Baimian2 × TM-1 and Baimian2 × CIR12. QTL for early-maturing traits were analyzed using F_2:3 families. A total of 54 QTL (31 suggestive and 23 significant) were detected. Fourteen significant QTL had the LOD scores not only > 3 but also exceeding permutation threshold. At least four common QTL, qBP-17 for bud period (BP), qGP-17a/qGP-17b (qGP-17) for growth period (GP), qYPBF-17a/qYPBF-17b (qYPBF-17) for yield percentage before frost (YPBF) and qHFFBN-17 for height of first fruiting branch node (HFFBN), were found in both populations. These common QTL should be reliable and could be used for MAS to facilitate early maturity. The common QTL, qBP-17, had a LOD score not only > 3 but also exceeding permutation threshold, explaining 12.6% of the phenotypic variation. This QTL should be considered preferentially in MAS. Early-maturing traits of cotton are primarily controlled by dominant and over-dominant effects.     

Analysis of decision-making coefficients of three main fiber quality traits for upland cotton (Gossypium hirsutum L.)

The analysis of genetic correlations between fiber length (Len), strength (Str), micronaire, and 12 other traits was conducted using the additive (A)-dominance (D) genetic model, which considers genotype × environment interaction effects, in intraspecific upland cotton (Gossypium hirsutum L.) hybrids to effectively improve the quality of cotton cultivars in high planting density cases. Decision-making coefficients were computed based on the genetic correlation and path analysis of three fiber quality traits. The decision-making coefficient analysis of three fiber traits in cross breeding was beneficial for the improvement of Len by increasing the additive effects of Str and length of boll (LB) and decreasing lint percentage (LP), boll number of the top three fruit-bearing branches. The analysis was also beneficial for the improvement of Str and fiber fineness by increasing or decreasing the additive effects of other traits. Utilizing heterosis in hybrids was beneficial to the heterosis of Len by selecting the high dominance effects of number of nodes of the 1st fruit-bearing branch and LB and decreasing the dominance effects of diameter of boll (DB) and LP and for improving Str by increasing the dominance effects of DB and decreasing the dominance effects of number of fruit-bearing branches and number of nodes of the main stem (NNMS). Utilizing heterosis was also beneficial for improving fineness by increasing the dominance effects of LB, Str, and lint yield and decreasing the dominance effects of NNMS and Len.     

Hydrogen peroxide reduces heat‐induced yield losses in cotton (Gossypium hirsutum L.) by protecting cellular membrane damage

We investigated the effect of various growth substances such as hydrogen peroxide, salicylic acid (SA), moringa leaf‐extract (MLE) and ascorbic acid (ASA) on leaf physiology and seed cotton yield (SCY) of heat‐stressed cotton. Cotton plants were exposed to elevated temperatures at three reproductive stages, either by staggering planting time in the field or by increasing growth cabinet temperatures (38/24°C and 45/30°C) in glasshouse. Elevated temperature at any reproductive phase significantly damaged cellular membrane and reduced SCY. Plants exposed to 38/24°C and 45/30°C in glasshouse produced 63% and 22% lower SCY, respectively, compared with plants under optimal temperature ((32/20°C). In response to high temperature, cotton plants up‐regulated activities of anti‐oxidative enzymes e.g. peroxidase and ascorbic acid. However, this defensive system could not protect cellular membrane of stressed plants from extreme temperature (38 and 45°C). In contrast, growth substances such as H2O2, ASA and MLE significantly increased anti‐oxidative enzymes activity to an extent, which reduced heat‐induced damage to cellular membrane. No significant effect of any regulator was observed on SCY under optimum temperatures; although H2O2, MLE and ASA significantly increased SCY of heat‐stressed cotton. Hydrogen peroxide increased SCY of April and May thermal regimes crops by 16% (averaged across both sowing dates) under field, while it caused 14% and 20% increase in SCY of plants exposed to sub (38/24°C) and supra optimal (45/30°C) thermal regimes under glasshouse. We concluded that growth regulators, specifically, H2O2 can protect cotton crops from heat‐induced cellular membrane damage by up‐regulating antioxidant defense system.     

Construction of a genetic linkage map and QTL analysis of fiber-related traits in upland cotton (Gossypium hirsutum L.)

A genetic linkage map with 70 loci (55 SSR, 12 AFLP and 3 morphological loci) was constructed using 117 F₂ plants obtained from a cross between two upland cotton cultivars Yumian 1 and T586, which have relatively high levels of DNA marker polymorphism and differ remarkably in fiber-related traits. The linkage map comprised of 20 linkage groups, covering 525 cM with an average distance of 7.5 cM between two markers, or approximately 11.8% of the recombination length of the cotton genome. The present genetic linkage map was used to identify and map the quantitative trait loci (QTLs) affecting lint percentage and fiber quality traits in 117 F_2:3 family lines. Sixteen QTLs for lint percentage and fiber quality traits were identified in six linkage groups by multiple interval mapping: four QTLs for lint percentage, two QTLs for fiber 2.5% span length, three QTLs for fiber length uniformity, three QTLs for fiber strength, two QTLs for fiber elongation and two QTLs for micronaire reading. The QTL controlling fiber-related traits were mainly additive, and meanwhile including dominant and overdominant. Several QTLs affecting different fiber-related traits were detected within the same chromosome region, suggesting that genes controlling fiber traits may be linked or the result of pleiotropy.     

低酚棉棉子品质性状的遗传分析

利用ＡＤＭ模型对棉子品质性状的遗传分析结果表明，壳指、仁指、仁壳比、种仁率和种仁蛋白质指数存在母体效应，其中蛋白质指数的母体效应还大于加性和显性效应。子指主要受显性效应控制，且不存在母体效应，其它四个棉子物理品质性状的显性效应大于加性效应，但年度间存在差异。蛋白质含量、油分含量和油分指数不存在母体效应。所有棉子品质性状的狭义遗传率均较低。仁指可作为棉子物理品质性状改良的选择指标；棉子营养品质的选择在很大程度上取决于快速、可靠的检验方法的建立和完善。ＩＳＡＢＣ４ｇｌ可用于棉子物理品质性状的改良，浙棉９号可用于棉子营养品质性状的改良。这两个品种的杂种后代，棉子品质有较强的杂种优势。     

Genetic analysis of earliness in upland cotton ( Gossypium hirsutum L.). II. Yield and lint percentage

Inheritance and interrelationships of seed cotton and lint yields were evaluated in a diallel analysis involving seven early maturing parents of different origin and a commercial variety. Lint yield showed relatively little additive variance and low heritability, whereas lint percentage showed the opposite. Highest yields were shown by the least determinate and slowest-maturing genotypes; yields generally decreased as determinacy increased and rate of maturity accelerated. Except for date for first open boll, components of earliness showed no associated with yield.     

脱落酸对棉花体细胞胚胎发生的影响

【目的】研究脱落酸(Abscisic acid, ABA)对棉花体细胞胚胎发生过程中下胚轴脱分化和再分化的影响,优化体细胞胚胎发生体系和初步解析脱落酸调控棉花体细胞胚胎发生分子机制。【方法】以棉花品种中棉所24(CCRI 24)下胚轴为外植体,设置5个ABA浓度0、0.02、0.04、0.06、0.08μmol·L^-1,分别以A0、A1、A2、A3、A4表示,添加至MSB(MS培养基+B5维生素)培养基诱导愈伤和胚性愈伤,研究ABA对棉花下胚轴初始细胞脱分化、愈伤组织诱导和胚性愈伤组织诱导的影响。【结果】ABA促进下胚轴初始细胞脱分化;显著提高愈伤组织的脱分化率和增殖率;0.02μmol·L^-1ABA显著提高胚性愈伤分化率,0.04~0.08μmol·L^-1ABA显著降低胚性愈伤分化率。ABA处理后胚性愈伤和非胚性愈伤的增殖率均显著提高且质地受到影响。0.02~0.08μmol ABA处理下,LBD和LBD在愈伤起始期上调表达。0.02μmol·L^-1ABA处理下,在愈伤增殖早期和中期BBM、LEC1和AGL15上调表达,愈伤增殖后期FUS3、LEA、ABI3基因上调表达。【结论】脱落酸调控的棉花体细胞胚胎发生与相关标记基因的时空性表达密切相关,这些基因表达水平的增加是ABA调控愈伤和胚性愈伤分化的分子基础。     

Response to selective pressure in early generation progenies of upland cotton (Gossypium hirsutum L.)

Summary Combining high fiber strength with high yield in upland cotton (Gossipium hirsutum L.) was been difficult. The cross combination, 69–120 × 6M-10, was chosen for this study because of the divergence of parents for fiber strength, seeds per boll and crop maturity. Forty F₂ plants were selected in 1974 solely on the basis of visual yield and 20 plants were randomly chosen to serve as a bulk check. The F₃ progenies, the bulk check, the parents and a commercial check were tested in 1975. From these results, five groups were established, consisting of four (10%) progenies each to represent high seed/boll, low seeds/boll, high fiber strength, low fiber strength and high yield in the 1976 test of F₄ progenies. This experiment was conducted to (a) compare the contributions of yield components to lint yield among groups of early generation progenies (F₃ and F₄) and (b) determine the phenotypic correlations between yield and quality attributes. The yield components, bolls/m², seeds/boll, fibers/seed, mean fiber length and micronaire, were included as well as fiber strength.No significant lint yield differences were found among the five groups. Progenies within groups did, however, differ in lint yield. The low and high seeds boll groups gave similar yield and fiber quality results. The low and high fiber strength groups gave similar yield but longer fiber was obtained with the high strength group.Stepwise regression analyses estimates show that the number of bolls produced per unit area, although the major contributor to lint yield for all groups, contributed only 66.9% of the total variation in the progeny group selected for high yield, with fibers/seed, mean fiber length, micronaire and seeds/boll accounting for 13.2%, 8.1%, 6.0%, and 5.8%, respectively. Correlations between the various yield components and fiber strength were low and mainly insignificant, indicating that minor alterations might be made in later generations without serious consequences.Potential gains from second-stage selective pressure upon yield-per-boll components following initial selection for lint yield are discussed.     

陆地棉重组自交系群体纤维品质及产量性状遗传变异分析

以陆地棉优质品系0-153和大面积推广的双价转基因抗虫棉品系sGK9708为亲本构建了含有196个F6:8家系的重组自交系群体。在4个环境中,纤维长度、纤维强度、麦克隆值、伸长率、整齐度指数、单株结铃数、铃重、衣分、子指、单株子棉产量及单株皮棉产量等性状均呈正态分布,且存在双向超亲分离。多环境下变异分析表明,各性状家系间及环境间存在极显著差异。除纤维伸长率外,其余各纤维品质及产量性状都具有较高的遗传力,在0.75以上。共有6个家系在纤维长度、细度和强度性状上均超过高亲,可作为优质纤维种质。相关分析显示,有些家系可能打破了纤维品质和产量性状间的负相关。通过聚类分析得出,该群体各系分在了不同的组,表明存在着一定的遗传差异。该群体是进行优异纤维品质相关基础研究的良好材料。     

陆地棉高品质系数量性状的遗传变异与选择指数

 研究了20个高品质陆地棉品系12个数量性状的遗传变异、广义遗传力、遗传相关及产量的选择指数。结果表明,单株产量和株铃数具有较大的遗传变异,纤维品质性状的遗传变异较小,说明继续改良高品质系的产量性状潜力较大。纤维品质性状的广义遗传力介于79.07%~89.47%之间,产量及产量组分性状中以衣分和铃重最高,广义遗传力分别为89.1%和81.85%,单株皮棉重最低,为55.05%。单株皮棉重与株铃数、株铃数与果枝数成极显著遗传正相关。利用与单株皮棉重遗传相关较强的多个性状构建的选择指数,比单纯选择单株皮棉重的效果好,其中以单株皮棉重、株铃数、果枝数和果节数结合选择的效果最佳。     

Association mapping identifies markers related to major early‐maturating traits in upland cotton (Gossypium hirsutum L.)

Association mapping is a promising tool to identify genes for quantitative traits. A total of 172 upland cotton (Gossypium hirsutum L.) accessions were assessed. The panel was phenotyped for four major early‐maturating traits across multiple environments and genotyped using 331 polymorphic simple sequence repeat (SSR) markers. The gene diversity of the 331 markers averaged 0.40 (range: 0.04–0.78), and the polymorphism information content (PIC) averaged 0.34 (range: 0.04–0.75). Thirty‐nine significant markers related to early‐maturating traits were simultaneously detected in at least two environments. Among the 39 markers, 11 for seed period (SP), seven for bud period (BP), six for flower and boll period (FBP), and 15 for growth period (GP). These markers were stable and could be used for marker‐assisted selection (MAS). Favourable alleles for SP, BP, FBP and GP were explored. These alleles can be directly used in MAS to improve cotton early maturity. This study lays the foundation for analysing the genetic mechanisms underlying early maturity, as well as the use of MAS to target traits in cotton.     

棉花转基因材料的获得及主要农艺性状变异分析

 利用不同棉花受体材料进行花粉管通道法遗传转化研究。通过卡那霉素鉴定、抗虫性鉴定和PCR分子生物学鉴定,证明已成功将Bt基因转化到泗棉3号、辽棉15、中棉所19、中棉所29母本、中棉所35、中棉所36等棉花材料中。通过对转基因材料后代与非转基因材料的铃重、衣分和纤维品质等差异分析,发现花粉管通道转基因后代材料存在广泛的变异。     

不同遗传背景下陆地棉衣分和子指性状QTL定位

为陆地棉产量性状有关的分子标记辅助育种奠定理论基础,以高品质中长绒棉品种‘新陆早24号’为父本,转基因抗虫棉常规品种‘鲁棉研28号’和高产、优质棉花新品种‘冀棉516’为母本,构建F2和F2:3分离群体;利用7638对SSR引物对‘鲁棉研28号’和‘新陆早24号’进行多态性进行筛选,共获得225对多态性引物,对238个F2单株DNA扩增获得238个多态性标记位点,其中185个构建了包括44个连锁群,总长为1509.38 cM的遗传连锁图谱,标记间的平均距离为8.16 cM,覆盖棉花总基因组的33.91%。根据已有图谱的定位结果,40个连锁群与染色体建立联系。利用复合区间作图法定位‘鲁棉研28号’与‘新陆早24号’分离群体F2单株和F2:3家系的衣分和子指性状QTL,其中得到3个衣分和5个子指的QTL;根据定位结果,选择了14对SSR引物,分析‘冀棉516’与‘新陆早24号’的多态性,其中6个标记构建了两个连锁群。1个衣分和1个子指的QTL在两个群体中均检测到,这些共同QTLs为分子标记辅助育种奠定了基础。