Separation of light and heavy organic matter fractions in soil — Testing for proper density cut-off and dispersion level

Density fractionation is frequently applied to separate soil organic matter according to the degree and the mode of interaction with minerals. Density fractions are operationally defined by density cut-off and sonication intensity, which determine the nature of the separated material. However, no tests or general agreements exist on the most appropriate density cut-off as well as on method and intensity of dispersion. Numerous variants have been proposed and applied, with results often contrasting each other and being hard to interpret. Here, we aimed at separating two light fractions (free and occluded into aggregates) composed of almost pure organic material, and one heavy fraction comprising the organic–mineral associations. We tested effects of different density cut-offs and sonication intensities, in combination and separately, on fraction yields, as well as on the fractions' organic carbon, total nitrogen and lignin-derived phenols. We tried to find optimum density cut-offs and sonication intensities, providing light fractions with maximum organic material and minimum contamination by mineral material. Under the test conditions, a density of 1.6 g cm^?3 gave best results for all test soils, allowing for separation of maximums amounts of almost pure organic material. The density cut-off at 1.6 g cm^?3 is well in line with previous studies and theoretical considerations, therefore we recommend the use of this density as most suitable for separation of organic debris. Sonication levels for aggregate disruption to achieve complete separation of occluded light organic matter varied amongst soils. The necessary intensity of dispersion relates to the type of soil, depending on the stability of contained aggregates. The application of one single dispersion energy level to different soils may result either in mineral contamination or in incomplete separation of light and heavy fractions as well as in redistribution of organic material amongst fractions. This means there is no single sonication level that can be applied to all soils. Thus, obtaining a meaningful light fraction residing within aggregates (occluded light fraction) requires assessment of the dispersion energy necessary to disrupt the aggregate system of a given soil without dispersion of organic–mineral associations. This can be done in pre-experiments where the soil is fractionated at different sonication levels. The appropriate dispersion is determined by mass yields and OC content of the obtained occluded fractions.     

Response of labile soil organic matter to changes in forest vegetation in subtropical regions

Labile soil organic matter (SOM) can sensitively respond to changes in land use and management practices, and has been suggested as an early and sensitive indicator of SOM. However, knowledge of effects of forest vegetation type on labile SOM is still scarce, particularly in subtropical regions. Soil microbial biomass C and N, water-soluble soil organic C and N, and light SOM fraction in four subtropical forests were studied in subtropical China. Forest vegetation type significantly affected labile SOM. Secondary broadleaved forest (SBF) had the highest soil microbial biomass, basal respiration and water-soluble SOM, and the pure Cunninghamia lanceolata plantation (PC) the lowest. Soil microbial biomass C and N and respiration were on average 100%, 104% and 75%, respectively higher in the SBF than in the PC. The influence of vegetation on water-soluble SOM was generally larger in the 0–10 cm soil layer than in the 10–20 cm. Cold- and hot-water-soluble organic C and N were on average 33–70% higher in the SBF than in the PC. Cold- and hot-soluble soil organic C concentrations in the coniferous-broadleaved mixed plantations were on average 38.1 and 25.0% higher than in the pure coniferous plantation, and cold- and hot-soluble soil total N were 51.4 and 14.1% higher, respectively. Therefore, introducing native broadleaved trees into pure coniferous plantations increased water-soluble SOM. The light SOM fraction (free and occluded) in the 0–10 cm soil layer, which ranged from 11.7 to 29.2 g kg⁻¹ dry weight of soil, was strongly affected by vegetation. The light fraction soil organic C, expressed as percent of total soil organic C, ranged from 18.3% in the mixed plantations of C. lanceolata and Kalopanax septemlobus to 26.3% in the SBF. In addition, there were strong correlations among soil organic C and labile fractions, suggesting that they were in close association and partly represented similar C pools in soils. Our results indicated that hot-water-soluble method could be a suitable measure for labile SOM in subtropical forest soils.     

Influence of dry–wet cycles on the interrelationship between aggregate,particulate organic matter,and microbial community dynamics

Aggregate dynamics and their relationship to the microbial community have been suggested as key factors controlling SOM dynamics. Dry–wet (DW) cycles are thought to enhance aggregate turnover and decomposition of soil organic matter (SOM), particularly in tilled soils. The objective of this study was to evaluate the effects of DW cycles on aggregate stability, SOM dynamics, and fungal and bacterial populations in a Weld silt loam soil (Aridic Paleustoll). Samples, taken from 250 μm sieved air-dried soil (i.e. free of macroaggregates > 250 μm), were incubated with ¹³C-labeled wheat residue. In one set of soil samples, fungal growth was suppressed using a fungicide (Captan) in order to discern the effect of dry–wet cycles on fungal and bacterial populations. Aggregate formation was followed during the first 14 d of incubation. After this period, one set of soil samples was subjected to four DW cycles, whereas another set, as a control, was kept at field capacity (FC). Over 74 d, total and wheat-derived respiration, size distribution of water stable aggregates and fungal and bacterial biomass were measured. We determined native and labeled C dynamics of three particulate organic matter (POM) fractions related to soil structure: the free light fraction (LF), and the coarse (250–2000 μm) and fine (53–250 μm) intra-aggregate POM fraction (iPOM). In the fungicide treated soil samples, fungal growth was significantly reduced and no large macroaggregates (> 2 mm) were formed, whereas without addition of fungicide, fungi represented the largest part of the microbial biomass (66%) and 30% of the soil dry weight was composed of large macroaggregates. During macroaggregate formation, labeled free LF-C significantly decreased whereas labeled coarse iPOM-C increased, indicating that macroggregates are formed around fresh wheat residue (free LF), which is consequently incorporated and becomes coarse iPOM. The first drying and wetting event reduced the amount of large macroaggregates from 30 to 21% of the total soil weight. However, macroaggregates became slake-resistant after two dry-wet cycles. Fine iPOM-C was significantly lower in soil after two dry–wet cycles compared to soil kept at FC. We conclude that more coarse iPOM is decomposed into fine iPOM in macroaggregates not exposed to DW cycles due to a slower macroaggregate turnover. In addition, when macroaggregates, subjected to dry–wet cycles, became slake-resistant (d 44) and consequently macroaggregate turnover decreased, fine iPOM accumulated. In conclusion, differences in fine iPOM accumulation in DW vs. control macroaggregates are attributed to differences in macroaggregate turnover.     

Factors affecting the molecular structure and mean residence time of occluded organics in a lithosequence of soils under ponderosa pine

Occluded, or intra-aggregate, soil organic matter (SOM) comprises a significant portion of the total C pool in forest soils and often has very long mean residence times (MRTs). However, occluded C characteristics vary widely among soils and the genesis and composition of the occluded organic matter pool are not well understood. This work sought to define the major controls on the composition and MRT of occluded SOM in western U.S. conifer forest soils with specific focus on the influence of soil mineral assemblage and aggregate stability. We sampled soils from a lithosequence of four parent materials (rhyolite, granite, basalt, and dolostone) under Pinus ponderosa. Three pedons were excavated to the depth of refusal at each site and sampled by genetic horizon. After density separation at 1.8 g cm⁻³ into free/light, occluded and mineral fractions, the chemical nature and mean residence time of organics in each fraction were compared. SOM chemistry was explored through the use of stable isotope analyses, ¹³C NMR, and pyrolysis GC/MS. Soil charcoal content estimates were based on ¹³C NMR analyses. Estimates of SOM MRT were based on steady-state modeling of SOM radiocarbon abundance measurements. Across all soils, the occluded fraction was 0.5–5 times enriched in charcoal in comparison to the bulk soil and had a substantially longer MRT than either the mineral fraction or the free/light fraction. These results suggest that charcoal from periodic burning is the primary source of occluded organics in these soils, and that the structural properties of charcoal promote its aggregation and long-term preservation. Surprisingly, aggregate stability, as measured through ultrasonic dispersion, was not correlated with occluded SOM abundance or MRT, perhaps raising questions of how well laboratory measurements of aggregate stability capture the dynamics of aggregate turnover under field conditions. Examination of the molecular characteristics of the occluded fraction was more conclusive. Occluded fraction composition did not change substantially with soil mineral assemblage, but was increasingly enriched in charcoal with depth relative to bulk SOM. Enrichment levels of ¹³C and ¹⁵N suggested a similar degree of microbial processing for the free/light and occluded fractions, and molecular structure of occluded and free/light fractions were also similar aside from charcoal enrichment in the occluded fraction. Results highlight the importance of both fire and aggregate formation to the long-term preservation of organics in western U.S. conifer forests which experience periodic burning, and suggest that the composition of occluded SOM in these soils is dependent on fire and the selective occlusion of charcoal.     

Differences in soil respiration between different tropical ecosystems

We examined the relationship between soil respiration rate and environmental determinants in three types of tropical forest ecosystem—primary forest, secondary forest, and an oil palm plantation in the Pasoh Forest Reserve on the Malaysian Peninsula. In August 2000, the soil respiration rate and environmental factors (soil temperature, soil water content, soil C and N contents, biomass of fine roots, and microbes) were measured at 12–16 points in research quadrats. Soil respiration rates were 831 ± 480, 1104 ± 995, 838 ± 143, 576 ± 374, and 966 ± 578 (mean ± S.D.) mg CO₂ m⁻² h⁻¹ in the primary forest canopy and gap site, secondary forest canopy and gap site, and oil palm plantation, respectively. Although the mean soil respiration rates in the three forest ecosystems did not differ significantly, differences were evident in the environmental factors affecting the soil respiration. The major causes of spatial variation in soil respiration were fine root biomass, soil water content, and soil C content in the primary and secondary forests and oil palm plantation, respectively.     

Pathways of litter C by formation of aggregates and SOM density fractions: Implications from 13C natural abundance

Aggregate formation is a key process of soil development, which promotes carbon (C) stabilization by hindering decomposition of particulate organic matter (POM) and its interactions with mineral particles. C stabilization processes lead to ¹³C fractionation and consequently to various δ¹³C values of soil organic matter (SOM) fractions. Differences in δ¹³C within the aggregates and fractions may have two reasons: 1) preferential stabilization of organic compounds with light or heavy δ¹³C and/or 2) stabilization of organic materials after passing one or more microbial utilization cycles, leading to heavier δ¹³C in remaining C. We hypothesized that: 1) ¹³C enrichment between the SOM fractions corresponds to successive steps of SOM formation; 2) ¹³C fractionation (but not the δ¹³C signature) depends mainly on the transformation steps and not on the C precursors. Consequently, minimal differences between Δ¹³C of SOM fractions between various ecosystems correspond to maximal probability of the SOM formation pathways.We tested these hypotheses on three soils formed from cover loam during 45 years of growth of coniferous or deciduous forests or arable crops. Organic C pools in large macroaggregates, small macroaggregates, and microaggregates were fractionated sequentially for four density fractions to obtain free POM with ρ < 1.6 g cm⁻³, occluded POM with two densities (ρ < 1.6 and 1.6–2.0 g cm⁻³), and mineral fraction (ρ > 2.0 g cm⁻³).The density fractions were ¹³C enriched in the order: free POM < light occluded POM < heavy occluded POM < mineral fraction. This, as well as their C/N ratios confirmed that free POM was close to initial plant material, whereas the mineral fraction was the most microbially processed. To evaluate the successive steps of SOM formation, the Δ¹³C values between δ¹³C of SOM fractions and δ¹³C of bulk SOM were calculated. The Δ¹³C indicated that, parallel with biochemical transformations, the physical disintegration strongly contributed to the formation of free and occluded light POM. In contrast, biochemical transformations were more important than physical disintegration for formation of heavy occluded POM from light occluded POM. This was confirmed by review of 70 Δ¹³C values from other studies analyzed Δ¹³C depending on the density of SOM fractions. Accordingly, the successive steps of SOM formation were: fLF_<1.6 = oLF_<1.6 → oDF_1.6–2.0 = MF_>2.0. The obtained steps of C stabilization were independent on the initial precursors (litter of coniferous forest, deciduous forest or grasses).To test the second hypothesis, we proposed an extended scheme of C flows between the 3 aggregate size classes and 4 SOM fractions. Δ¹³C enrichment of the SOM fractions showed that the main direction of C flows within the aggregates and SOM fractions was from the macroaggregate-free POM to the mineral microaggregate fraction. This confirmed the earlier concept of SOM turnover in aggregates, but for the first time quantified the C flows within the aggregates and SOM density fractions based on δ¹³C values. So, the new ¹³C natural abundance approach is suitable for analysis of C pathways by SOM formation under steady state without ¹³C or ¹⁴C labeling.     

Soil organic matter fractions as early indicators for carbon stock changes under different land-use?

With respect to carbon sequestration in soil, attempts have been made to identify soil organic matter (SOM) fractions that respond more rapidly to changes in land-use than bulk SOM, which could thus serve as early indicators for the overall stock change. We used a combination of physical fractionation (size and density separation) and chemical characterisation (C-to-N ratios, CuO lignin signature, ¹³C NMR spectroscopy) to identify sensitive SOM fractions in an agricultural system with sandy dystric cambisols in Bavaria, Germany, 7 years after a land-use change. Land-use types included long-term arable land and grassland, and conversion from one system to the other. Soil carbon and nitrogen contents in 0–3 cm increased from 14 to 39 mg organic carbon g⁻¹ soil, and from 1.7 to 3.9 mg nitrogen g⁻¹ soil in the following order: permanent arable, conversion grassland to arable, conversion arable to grassland, and permanent grassland. Wet sieving and ultrasonic dispersion with 22 J ml⁻¹ released <5% and 60% to 80%, respectively, of the amount of particles >20 μm relative to complete dispersion. The most sensitive fraction, with respect to land-use, was SOM in the fraction >20 μm not released after sequential wet sieving and ultrasonic dispersion. In contrast, the proportion of free light (wet sieving, density <1.8 g cm⁻³) and occluded light (ultrasonic dispersion with 22 J ml⁻¹, <1.8 g cm⁻³) particulate organic matter (POM) showed no clear response to land-use. The structural composition of POM indicated its vegetation origin with a selective enrichment of lignin and a loss of O-alkyl C relative to its plant precursors. Decomposition of the occluded light POM was only slightly advanced relative to the free light POM. In mineral fractions <20 μm, SOM was significantly more transformed than in the coarse fractions, as shown by NMR spectroscopy; however, it revealed no specific land-use pattern. An exception to this was the proportion of O-alkyl C in the clay fraction, which increased with SOC content. Ratios of alkyl to O-alkyl C in mineral fractions <20 μm differentiated samples gave a better differentiation of samples than the C-to-N ratios. We conclude that neither free nor occluded light POM are appropriate early indicators for changes in land-use at the investigated sites; however, total SOM, its distribution with depth, and SOM allocated in stable aggregates >20 μm were more sensitive.     

Uptake and bioaccumulation of heavy elements by two earthworm species from a smelter contaminated area in northern Kosovo

As, Cd, Cu, Pb, Sb and Zn concentrations were determined in two earthworm species (Allolobophora rosea and Nicodrilus caliginosus) from a mining and industrial area in northern Kosovo and compared with their contents in the bulk soil and the main soil fractions. Earthworm specimens were collected at fifteen sites located at different distances from a Pb–Zn smelter along a gradient of decreasing contamination. Individuals of A. rosea and N. caliginosus showed similar tissue levels of As, Cd, Cu, Pb, Sb and Zn, suggesting that earthworm species belonging to the same eco-physiological group have a similar propensity to uptake and bioaccumulate heavy elements. Cd, Pb, Sb and Zn concentrations in both earthworm species were positively correlated with the respective total soil contents and generally decreased with distance from the smelter. The bioaccumulation factor (BAF) revealed that Cd and Zn were the only elements bioaccumulated by earthworms. The rank order of BAF values for both species was as follows: Cd > > Zn > > Cu > As = Pb = Sb. The absorption of Cd, Pb, Sb and Zn by earthworms mostly depended on the extractable, reducible and oxidable soil fractions, suggesting that the intestine is likely the most important uptake route. The extractable soil fraction constantly influenced the uptake of these heavy elements, whereas the reducible fraction was important mainly for Pb and Zn. The water soluble fraction had an important role especially for the most mobile heavy elements such as Cd and Zn, suggesting that dermal uptake is not negligible. As a whole, the analytical data indicate that soil fractionation patterns influence the uptake of heavy elements by earthworms, and the extractable fraction is a good predictor of heavy element bioavailability to these invertebrates in soil.     

Recovery of amphibian species richness and composition in a chronosequence of secondary forests,northeastern Costa Rica

In some tropical regions, following the abandonment of agriculture and pastures, secondary forests can recover plant species richness and forest structure (e.g. canopy cover, biomass); however, the importance of these secondary forests for fauna is not clear. Secondary forests can benefit fauna by providing suitable habitats, connecting forests fragments, and increasing gene flow. Previous studies of forest regeneration have showed different levels of amphibian recovery. In Puerto Rico, 1–5 years old secondary forests achieved similar amphibian species richness and composition in comparison with old-growth forests, while in Brazil secondary forests from 14 to 19 years of recovery only recovered 60% of the species of old-growth forests. We evaluated amphibian recovery in secondary forests in northeastern Costa Rica, by assessing amphibian recovery in 12 secondary forests that vary in age of recovery and in three old-growth forests using visual and acoustic surveys. Our sites varied in terms of their landscape (e.g. amount of surrounding forest) and forest characteristics (e.g. forest age, aboveground biomass, basal area, number of tree species, number of stems, leaf-litter depth), but there was no relationship between these characteristics and amphibian species richness or species composition. We found that amphibians are recovering rapidly in secondary forests in Costa Rica, and even young forests (10–16 years) had similar species richness and composition in comparison with old-growth forests. These forests are providing suitable microhabitats conditions for amphibians. In addition, this study highlights the importance of landscape characteristics. The abundance of amphibian species sources (e.g. forest patches) and connections between forests appear to be helping the species colonize these sites. Worldwide, the area of secondary forests is increasing, and our results show that these habitats are suitable for a diversity of amphibian species, suggesting that these forests can help reduce amphibian population and species decline.     

Diversity of soil mites (Acari: Oribatida,Mesostigmata) along a gradient of land use types in New York

This study explored the relationship between landscape-level factors (land use type) and the diversity of soil mites (Acari: Oribatida, Mesostigmata) at a within-site scale, using diversity measures including point diversity (local species diversity within a single sampling point), patterns of species turnover among the sampling points, and alpha diversity (total species richness in a habitat). The land use types included corn fields, intensive short-rotation forestry plantations, two types of abandoned agricultural fields, and hardwood forests.Land use type was identified as a significant factor influencing both small-scale (within individual soil cores) and site-scale diversity of Oribatida, which increased in the order “corn → willow → abandoned fields → forests”. There was no statistical relationship between land use type and abundance or diversity of Mesostigmata.Using a bootstrapping method to generate “random” communities, we found that all land use types had significantly more diverse patterns of species abundance than was expected by chance. On the other hand, the patterns of presence/absence of species were less diverse than expected by chance. Local site factors were significant in driving the patterns of diversity of soil mites at the site scale; land use type was less important. The overall structure of Oribatida and Mesostigmata assemblages was significantly related to land use type. We conclude that soil communities respond to land management on both local scales and habitat-wide scales.     

Comparison of forest soil carbon dynamics at five sites along a latitudinal gradient

The aim of this study was to compare the turnover time of labile soil carbon (C), in relation to temperature and soil texture, in several forest ecosystems that are representative of large areas of North America. Carbon and nitrogen (N) stocks, and C:N ratios, were measured in the forest floor, mineral soil, and two mineral soil fractions (particulate and mineral-associated organic matter, POM and MOM, respectively) at five AmeriFlux sites along a latitudinal gradient in the eastern United States. Sampling at four sites was replicated over two consecutive years. With one exception, forest floor and mineral soil C stocks increased from warm, southern sites (with fine-textured soils) to cool, northern sites (with more coarse-textured soils). The exception was a northern site, with less than 10% silt-clay content, that had a soil organic C stock similar to the southern sites. A two-compartment model was used to calculate the turnover time of labile soil organic C (MRT_U) and the annual transfer of labile C to stable C (k₂) at each site. Moving from south to north, MRT_U increased from approximately 5 to 14 years. Carbon-13 enrichment factors (ε), that described the rate of change in δ¹³C through the soil profile, were associated with soil C turnover times. Consistent with its role in stabilization of soil organic C, silt-clay content was positively correlated (r = 0.91; P ≤ 0.001) with parameter k₂. Latitudinal differences in the storage and turnover of soil C were related to mean annual temperature (MAT, °C), but soil texture superseded temperature when there was too little silt and clay to stabilize labile soil C and protect it from decomposition. Each site had a relatively high proportion of labile soil C (nearly 50% to a depth of 20 cm). Depending on unknown temperature sensitivities, large labile pools of forest soil C are at risk of decomposition in a warming climate, and losses could be disproportionately higher from coarse textured forest soils.     

Soil macroinvertebrate communities and ecosystem services in deforested landscapes of Amazonia

Land use changes in the Amazon region strongly impact soil macroinvertebrate communities, which are recognized as major drivers of soil functions (Lavelle et al., 2006). To explore these relations, we tested the hypotheses that (i) soil macrofauna communities respond to landscape changes and (ii) soil macrofauna and ecosystem services are linked. We conducted a survey of macrofauna communities and indicators of ecosystem services at 270 sites in southern Colombia (department of Caqueta) and northern Brazil (state of Pará), two areas of the Amazon where family agriculture dominates. Sites represented a variety of land use types: forests, fallows, annual or perennial crops, and pastures. At each site we assessed soil macroinvertebrate density (18 taxonomic units) and the following ecosystem service indicators: soil and aboveground biomass carbon stock; water infiltration rate; aeration, drainage and water storage capacities based on pore-size distribution; soil chemical fertility; and soil aggregation. Significant covariation was observed between macrofauna communities and landscape metric data (co-inertia analysis: RV = 0.30, p < 0.01, Monte Carlo test) and between macrofauna communities and ecosystem service indicators (co-inertia analysis: RV = 0.35, p < 0.01, Monte Carlo test). Points located in pastures within 100 m of forest had greater macrofauna density and diversity than those located in pastures with no forest within 100 m (Wilcoxon rank sum test, p < 0.01). Total macroinvertebrate density was significantly correlated with macroporosity (r² = 0.42, p < 0.01), as was the density of specific taxonomic groups: Chilopoda (r² = 0.43, p < 0.01), Isoptera (r² = 0.30, p < 0.01), Diplopoda (r² = 0.31, p < 0.01), and Formicidae (r² = 0.13, p < 0.01). Total macroinvertebrate density was also significantly correlated with available soil water (r² = 0.38, p < 0.01) as well as other soil-service indicators (but with r² < 0.10). Results demonstrate that landscape dynamics and composition affect soil macrofauna communities, and that soil macrofauna density is significantly correlated with soil services in deforested Amazonia, indicating that soil macrofauna have an engineering and/or indicator function.     

Temporal variation of soil compaction and deterioration of soil quality in pasture areas of Colombian Amazonia

In the Amazon basin, tropical rainforest is being slashed and burned at accelerated rates for annual crops over a couple of years, followed by forage grasses. Because of poor management, the productivity of established pastures declines in a few years so that grazing plots are abandoned and new areas are deforested. Previous studies in the region report higher bulk density in soils under pasture than in similar soils under forest. The objective of this study was to detect changes in the physical quality of the topsoil of nutrient-poor Typic Paleudults in the colonisation area of Guaviare, Colombian Amazonia, and analyse the effect of soil deterioration on pasture performance. Temporal variation of soil compaction under pasture was analysed by comparing natural forest taken as control and pasture plots of Brachiaria decumbens (Stapf) grouped into three age ranges (<3, 3–9, >9 years). Evidence of soil compaction through cattle trampling, after clearing the primary forest, included the formation of an Ap horizon with platy structure and dominant greyish or olive colours, reflecting impaired surface drainage, the increase of bulk density and penetration resistance, and the decrease of porosity and infiltration rate. From primary forest to pastures older than 9 years, bulk density of the 5–10 cm layer increase was 42% in fine-textured soils and 30% in coarse-textured soils. Penetration resistance ranged from 0.45 MPa under forest to 4.25 MPa in old pastures, with maximum values occurring at 3–12 cm depth in pastures older than 9 years. Average total soil porosity was 58–62% under forest and 46–49% under pasture. Basic infiltration dropped from 15 cm h⁻¹ in the original forest conditions to less than 1 cm h⁻¹ in old pastures. Crude protein content and dry matter yield of the forage grass steadily decreased over time. No clear relationship between declining protein content as a function of pasture age and changes in chemical soil properties was found, but there was a high negative correlation (r=−0.81) between protein content and bulk density, reflecting the effect of soil compaction on pasture performance. After about 9–10 years of use, established grass did no longer compete successfully with invading weeds and grazing plots were abandoned. As land is not yet a scarcity in this colonisation area, degraded pastures are seldom rehabilitated.     

Earthworm populations in relation to soil organic matter dynamics and management in California tomato cropping systems

Earthworms are key regulators of soil structure and soil organic matter (SOM) dynamics in many agroecosystems. They are greatly impacted by agricultural management, yet little is known about how these factors interact to control SOM dynamics. This study sought to explore linkages between agricultural management, earthworms and aggregate associated SOM dynamics through a survey of tomato (Solanum lycopersicum L.) cropping systems in northern California. Earthworms and soil samples were collected between February and April of 2005 from 16 fields under one of three types of residue management: (1) tomato mulch – no postharvest tillage and tomato residues left on the soil surface, (2) cover crop – tomato residues tilled in and leguminous cover crop planted, and (3) bare fallow – tomato residues tilled in and soil surface left exposed throughout the winter. Earthworms were collected via hand-sorting and identified to species, while soils were wet sieved to yield four aggregate size classes: large macroaggregates (>2000 μm), small macroaggregates (250–2000 μm), microaggregates (53–250 μm) and the silt and clay fraction (<53 μm). The combined large and small macroaggregate fraction was then fractionated into coarse particulate organic matter (cPOM; 250 μm), microaggregates within macroaggregates (mM; 53–250 μm) and macroaggregate occluded silt and clay (Msc; <53 μm). The earthworms identified in this survey were composed entirely of exotic species and were dominated by Aporrectodea caliginosa. Earthworm abundance was related to residue management, with the tomato mulch systems averaging 4.5 times greater fresh earthworm biomass than bare fallow (P = 0.024). Aggregate stability and total soil C and N also appeared to be influenced by residue management, such that the tomato mulch system displayed significantly greater mean weight diameters than the bare fallow system (P = 0.049), as well as more than 50% greater total soil C and N (P = 0.049 and P = 0.036; respectively). Earthworm biomass was also found to be positively correlated with total soil C (P = 0.009, R² = 0.39) and N (P = 0.010, R² = 0.039) as well as the proportion of macroaggregate C in the cPOM fraction (P = 0.028, R² = 0.30). Our findings suggest that residue handling and the associated management practices (e.g., tillage, organic vs. conventional agriculture) are important for both earthworm populations and SOM storage. Although earthworms are known to influence SOM in many ways, other factors appear to play a more prominent role in governing aggregate associated SOM dynamics.     

Methanotrophic communities in a landfill cover soil as revealed by [13C] PLFAs and respiratory quinones: Impact of high methane addition and landfill leachate irrigation

The soil microbial communities of a landfill cover substrate, which was treated with landfill gas (100 l CH₄ m^?2 d^?1) and landfill leachate for 1.5 years, were investigated by phospholipid fatty acid (PLFA), ergosterol and respiratory quinone analyses. The natural ¹³C depletion of methane was used to assess the activity of methanotrophs and carbon turnover in the soil system. Under methane addition, the soil microbial community was dominated by PLFAs (14:0 and 16:1 isomers) and quinones (ubiquinone-8 and 18-methylene-ubiquinone-8) related to type I methanotrophs, and 18:1 PLFAs contained in type II methanotrophs. While type I methanotrophic PLFAs were ¹³C depleted, i.e. type I methanotrophs were actively oxidising and assimilating methane, ¹³C depletion of 18:1 PLFAs was low and inconsistent with their abundance. This, possibly reflects isotopic discrimination, assimilation of carbon derived from type I methanotrophs and a high contribution of non-methanotrophic bacteria to the 18:1 isomers. Landfill leachate irrigation caused the methanotrophic community to shift closer to the soil surface. It also decreased 18:1 PLFAs, while type I methanotrophs were probably stimulated. Gram positive bacteria, but not fungi, were also ¹³C depleted and consequently involved in the secondary turnover of carbon originating from methanotrophic bacteria. Cy17:0 PLFA was ¹³C depleted in deep soil layers, indicating anaerobic methane oxidation.     

The role of biological activity (roots,earthworms) in medium-term C dynamics in vertisol under a Digitaria decumbens (Gramineae) pasture

The natural abundance of ¹³C was used to estimate the turnover of the soil organic matter in a vertisol re-grassed with Digitaria decumbens (C4 plant) following intensive market gardening (C3 plants). In addition, the experimental design allowed us to determine the respective roles of roots and earthworms (Polypheretima elongata) in soil C stock restoration in D. decumbens pasture.The C stock increased from 31 to 37 Mg C ha⁻¹ in 5 years and the δ¹³C increased from −18.1‰ in market gardening soil to −15.5‰ in the 5-year-old pasture soil in the upper 20 cm. Below the 20 cm soil layer, the C stock and the δ¹³C did not change significantly in 5 years. The net gain of 6 Mg C ha⁻¹ was the balance of a loss of 5 Mg C ha⁻¹ derived from market gardening and a gain of 11 Mg C ha⁻¹ derived from D. decumbens. Effects of earthworms on the C dynamics were not discernible.     

Soil carbon pools, plant biomarkers and mean carbon residence time after afforestation of grassland with three tree species

Afforestation of grassland has been globally identified as being an important means for creating a sink for atmospheric carbon (C). However, the impact of afforestation on soil C is still poorly understood, due to the paucity of well designed long-term experiments and the lack of investigation into the response of different soil C fractions to afforestation. In addition, little is known about the origins of soil C and soil organic matter (SOM) stability after afforestation. In a retrospective study, we measured C mass in the soil light and heavy fractions in the first 10 years after afforestation of grassland with Eucalyptus nitens, Pinus radiata and Cupressus macrocarpa. The results suggest that C mass in the soil heavy fraction remained stable, but the C mass in the light fraction decreased at year 5 under three species. Soil δ¹³C analysis showed that the decrease in the light fraction may be due to reduced C inputs from grassland species litter and low inputs from the still young trees. After the initial reduction, the recovery of soil C in the light fraction depended on tree species. At year 10, an increase of 33% in light fraction soil C was observed at the 0-30 cm depth under E. nitens, compared to that under the original grassland (year 0). Planting P. radiata restored light fraction soil C to the original level under grassland, whereas planting C. macrocarpa led to a decrease of 33%. We concluded that the increase of light fraction soil C between year 5 and 10 is most likely due to C input from tree residues. Most of the increased C was derived from root turnover under pine and from both root and leaf turnover under E. nitens, as indicated by plant C biomarkers such as lignin-derived phenols and suberin and cutin-derived compounds in the 0-5 cm soil layer. Modelling of soil ?¹⁴C‰ suggested that SOM had a greater mean residence time at year 10 than year 0 and 5 due to increased relative abundance of recalcitrant plant biopolymers.     

Distribution of roots and arbuscular mycorrhizal associations in tropical forest types of Xishuangbanna,southwest China

Root distribution and mycorrhizal associations were compared in primary, secondary and limestone forests in Xishuangbanna, southwest China. Soil cores to a depth of 20 cm were collected at random points from four 50 m² quadrats in each forest type. Arbuscular mycorrhizal (AM) associations were the only form of mycorrhiza found in all forest types. The primary forest was characterized by high root mass, root lengths and AM colonization levels higher than other forest types. In contrast, secondary forests had greater AM fungal spore numbers and specific root length, indicating that plant species in secondary forests achieved a greater degree of soil exploration with less biomass allocation to roots. Root density, AM colonization and AM fungal spore numbers decreased with soil depth in all forest types. Although the correlation between AM colonization levels and spore numbers was insignificant when all forest types were considered together, significant relationships emerged when each forest type was considered individually. AM colonization and spore numbers were correlated with several root variables.     

Microbial utilization and mineralization of [14C]glucose added in six orders of concentration to soil

The substrate availability for microbial biomass (MB) in soil is crucial for microbial biomass activity. Due to the fast microbial decomposition and the permanent production of easily available substrates in the rooted top soil mainly by plants during photosynthesis, easily available substrates make a very important contribution to many soil processes including soil organic matter turnover, microbial growth and maintenance, aggregate stabilization, CO₂ efflux, etc. Naturally occurring concentrations of easily available substances are low, ranging from 0.1 μM in soils free of roots and plant residues to 80 mM in root cells. We investigated the effect of adding ¹⁴C-labelled glucose at concentrations spanning the 6 orders of magnitude naturally occurring concentrations on glucose uptake and mineralization by microbial biomass. A positive correlation between the amount of added glucose and its portion mineralized to CO₂ was observed: After 22 days, from 26% to 44% of the added 0.0009 to 257 μg glucose C g^?1 soil was mineralized. The dependence of glucose mineralization on its amount can be described with two functions. Up to 2.6 μg glucose C g^?1 soil (corresponds to 0.78% of initial microbial biomass C), glucose mineralization increased with the slope of 1.8% more mineralized glucose C per 1 μg C added, accompanied by an increasing incorporation of glucose C into MB. An increased spatial contact between micro-organisms and glucose molecules with increasing concentration may be responsible for this fast increase in mineralization rates (at glucose additions <2.6 μg C g^?1). At glucose additions higher than 2.6 μg C g^?1 soil, however, the increase of the glucose mineralization per 1 μg added glucose was much smaller as at additions below 2.6 μg C g^?1 soil and was accompanied by decreasing portions of glucose ¹⁴C incorporated into microbial biomass. This supports the hypothesis of decreasing efficiency of glucose utilization by MB in response to increased substrate availability in the range 2.6–257 μg C g^?1 (=0.78–78% of microbial biomass C). At low glucose amounts, it was mainly stored in a chloroform-labile microbial pool, but not readily mineralized to CO₂. The addition of 257 μg glucose C g^?1 soil (0.78 μg C glucose μg^?1 C micro-organisms) caused a lag phase in mineralization of 19 h, indicating that glucose mineralization was not limited by the substrate availability but by the amount of MB which is typical for 2nd order kinetics.     

Pig slurry treatment modifies slurry composition,N2O,and CO2 emissions after soil incorporation

The treatment of manures may improve their agricultural value and environmental quality, for instance with regards to greenhouse gases mitigation and enhancement of carbon (C) sequestration. The present study verified whether different pig slurry treatments (i.e. solid/liquid separation and anaerobic digestion) changed slurry composition. The effect of the slurry composition on N₂O and CO₂ emissions, denitrification and soil mineral nitrogen (N), after soil incorporation, was also examined during a 58-day mesocosm study. The treatments included a non-treated pig slurry (NT), the solid fraction (SF), and the liquid fraction (LF) of a pig slurry and the anaerobically digested liquid fraction (DG). Finally, a non-fertilized (N0) and a treatment with urea (UR) were also present.The N₂O emissions measured represented 4.8%, 2.6%, 1.8%, 1.0% and 0.9% of N supplied with slurry/fertilizer for NT, LF, DG, SF and UR, respectively. Cumulative CO₂ emissions ranged from 0.40 g CO₂-C kg^?1 soil (0.38 Mg CO₂-C ha^?1) to 0.80 g CO₂-C kg^?1 soil (0.75 Mg CO₂-C ha^?1). They were highest for SF (56% of C applied), followed by NT (189% of C applied), LF (337% of C applied) and DG (321% of C applied). Ammonium was detected in the soil for all treatments only at day one, while nitrate concentration increased linearly from day 15 to day 58, at a rate independent of the type of slurry/fertilizer applied. The nitrate recovery at day 58 was 39% of the N applied for NT, 19% for SF, 52% for LF, 67% for DG, and 41% for UR. The solid fraction generally produced higher potential denitrification fluxes (75.3 for SF, 56.7 for NT, 53.6 for LF, 47.7 for DG and 39.7 mg N₂O + N₂-N kg^?1 soil for UR). The high variability of actual denitrification results obfuscated any treatment effect.We conclude that treatment strongly affects slurry composition (mainly its C, fibre and NH₄⁺ content), and hence N₂O and CO₂ emission patterns as well as denitrification processes and nitrate availability. In particular, the solid fraction obtained after mechanical separation produced the most pronounced difference, while the liquid fraction and the anaerobically digested liquid fraction did not show significant difference with respect to the original slurry for any of the measured parameters. Combining data from the different fractions we showed that separation of slurry leads to reduced N₂O emissions, irrespective of whether the liquid fraction is digested or not. Furthermore, our results suggested that the default emission factor for N₂O emissions inventory is too low for both the non-treated pig slurry and its liquid fraction (digested or not), and too high for the separated solid fraction and urea.